Rroxscaffold_2G00111880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000321
Physical Location & Seq
Reverse (-)
36706836 .. 36707360
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111880.1

Sequence Viewer

Length: 450 bp
ATGTTGGAACAACAGTTGGAAGTTATGCAAAACCAGATCAACATGTTTGCTTCATTATTGGATCCGGAGAAGTTGGATGCAGCTAAACTAAGCATGATGCGAGACATGTTCAAATCTAATAATGGATCTGAAAAAGCTAGCTGCTCGGTCGACAAGGAGAAAAATCAGTCTTCTAAGGAGGAGGTATCTAATGTGGCATCCAAGAAAGAAATTGAAAAAAAAGCTACTGAAAAAAAGGTTCGAAAAGTCGATGATATTCCATCTCCAATTGACAGTAGTAGAGAGAGCAAGAAGGCAAAACAACAATCCAAAGGGGGGCTAATGACGAGAGAGATAGCCGCATTGGAAGATGACAATGTGATAACATCAACGGATAAAGCATATATTCCTATCCGGACAACAAATGTTGTAAAAAAGGTACGTACCTTTGTGACCAGTGCATTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.7

Weight (kDa)

9.1

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AccIII TCCGGA 2 cut(s) 64, 393
AciI CCGC 1 cut(s) 339
AclWI GGATC 3 cut(s) 56, 69, 133
AfaI GTAC 2 cut(s) 420, 424
AfiI CCNNNNNNNGG 1 cut(s) 315
AflIII ACRYGT 2 cut(s) 42, 105
AgsI TTSAA 2 cut(s) 112, 215
AluBI AGCT 4 cut(s) 83, 137, 141, 224
AluI AGCT 4 cut(s) 83, 137, 141, 224
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 3 cut(s) 56, 69, 133
Aor13HI TCCGGA 2 cut(s) 64, 393
ApeKI GCWGC 2 cut(s) 80, 141
AsuII TTCGAA 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 92, 128
BccI CCATC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 2 cut(s) 138, 448
BisI GCNGC 3 cut(s) 81, 142, 339
BlsI GCNGC 3 cut(s) 82, 143, 340
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 3 cut(s) 67, 87, 206
BmtI GCTAGC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 162
Bpu14I TTCGAA 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 422
BsaWI WCCGGW 2 cut(s) 64, 393
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 1 cut(s) 435
BseAI TCCGGA 2 cut(s) 64, 393
BseGI GGATG 2 cut(s) 82, 197
BseLI CCNNNNNNNGG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 435
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 92, 128
Bsh1285I CGRYCG 1 cut(s) 150
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 2 cut(s) 65, 394
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 241
Bsp13I TCCGGA 2 cut(s) 64, 393
Bsp143I GATC 3 cut(s) 36, 61, 125
BspACI CCGC 1 cut(s) 339
BspEI TCCGGA 2 cut(s) 64, 393
BspLI GGNNCC 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 56, 69, 133
BspT104I TTCGAA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 435
BssMI GATC 3 cut(s) 36, 61, 125
Bst4CI ACNGT 2 cut(s) 15, 275
BstBAI YACGTR 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 89, 174
BstF5I GGATG 2 cut(s) 82, 197
BstKTI GATC 3 cut(s) 39, 64, 128
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 3 cut(s) 36, 61, 125
BstMCI CGRYCG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 46, 109
BstSNI TACGTA 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 92, 128
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 2 cut(s) 61, 125
BstYI RGATCY 2 cut(s) 61, 125
BtsCI GGATG 2 cut(s) 82, 197
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 419, 423
CviAII CATG 3 cut(s) 43, 94, 106
CviJI RGCY 6 cut(s) 83, 137, 141, 224, 319, 338
CviKI_1 RGCY 6 cut(s) 83, 137, 141, 224, 319, 338
CviQI GTAC 2 cut(s) 419, 423
DdeI CTNAG 2 cut(s) 89, 174
DpnI GATC 3 cut(s) 38, 63, 127
DpnII GATC 3 cut(s) 36, 61, 125
Eco105I TACGTA 1 cut(s) 422
FaeI CATG 3 cut(s) 46, 97, 109
FaiI YATR 6 cut(s) 26, 44, 95, 107, 382, 384
FatI CATG 3 cut(s) 42, 93, 105
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 81, 142, 339
FokI GGATG 2 cut(s) 89, 184
Fsp4HI GCNGC 3 cut(s) 81, 142, 339
FspBI CTAG 2 cut(s) 138, 448
GluI GCNGC 3 cut(s) 81, 142, 339
HapII CCGG 2 cut(s) 65, 394
Hin1II CATG 3 cut(s) 46, 97, 109
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HpaII CCGG 2 cut(s) 65, 394
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 2 cut(s) 65, 394
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 15, 275
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 28, 80, 440
HpyF3I CTNAG 2 cut(s) 89, 174
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 3 cut(s) 46, 97, 109
Kpn2I TCCGGA 2 cut(s) 64, 393
Kzo9I GATC 3 cut(s) 36, 61, 125
LpnPI CCDG 3 cut(s) 47, 78, 407
Lsp1109I GCAGC 2 cut(s) 92, 128
LweI GCATC 3 cut(s) 67, 87, 206
MaeI CTAG 2 cut(s) 138, 448
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 430
MalI GATC 3 cut(s) 38, 63, 127
MboI GATC 3 cut(s) 36, 61, 125
MboII GAAGA 2 cut(s) 162, 359
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 2 cut(s) 61, 125
MluCI AATT 2 cut(s) 210, 267
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 2 cut(s) 172, 175
MroI TCCGGA 2 cut(s) 64, 393
MspI CCGG 2 cut(s) 65, 394
MunI CAATTG 1 cut(s) 267
NdeII GATC 3 cut(s) 36, 61, 125
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 3 cut(s) 46, 97, 109
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 430
NspI RCATGY 2 cut(s) 46, 109
NspV TTCGAA 1 cut(s) 241
PciI ACATGT 2 cut(s) 42, 105
PkrI GCNGC 3 cut(s) 82, 143, 340
Ppu21I YACGTR 1 cut(s) 422
PscI ACATGT 2 cut(s) 42, 105
PspN4I GGNNCC 1 cut(s) 63
PsuI RGATCY 2 cut(s) 61, 125
RsaI GTAC 2 cut(s) 420, 424
RsaNI GTAC 2 cut(s) 419, 423
SalI GTCGAC 1 cut(s) 149
SatI GCNGC 3 cut(s) 81, 142, 339
Sau3AI GATC 3 cut(s) 36, 61, 125
SetI ASST 9 cut(s) 85, 139, 143, 186, 226, 240, 420, 424, 428
SfaNI GCATC 3 cut(s) 67, 87, 206
SfuI TTCGAA 1 cut(s) 241
SnaBI TACGTA 1 cut(s) 422
Sse9I AATT 2 cut(s) 210, 267
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 138, 448
TaaI ACNGT 2 cut(s) 15, 275
TaiI ACGT 1 cut(s) 424
TaqI TCGA 3 cut(s) 150, 241, 249
TaqII GACCGA 1 cut(s) 136
TasI AATT 2 cut(s) 210, 267
TauI GCSGC 1 cut(s) 341
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 2 cut(s) 80, 141
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 442
XceI RCATGY 2 cut(s) 46, 109
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 2 cut(s) 138, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.