Rh3BG126700

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000321
Physical Location & Seq
Reverse (-)
10474415 .. 10474895
481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG126700.1

Sequence Viewer

Length: 396 bp
ATGTCAGACTTGGTCCATCGTAGGGGCGGTAAAGGTCGTATAAAAGTTGGATATAACACAAAAGGACAGCCAGAAGGCAAGCATGGGTCAAATCTAGCTAGTTTCATAGGAGTAATGGCGCGAAGCACTGTTCCAATTATATATGAAGATTGGAAAGCGGTACCACCTTCTTTAAAGGATAAGATATGGGACATGGTTCTGAAAGCATTCATCGTGGATATGAATAGTAGGAAGCATGTCATAAGCAGTGCTGGAAAGGCATGGAAATCATTCAAGAGCACTTTAACAACATCATATATATTGAAATTCAAACATCAGCCTCACAAGCTAAAGACTCCACCTCTTGGCTATGATTTCATCCTTCAAACACATTGGGATGCCTTTGTGAAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

131

Amino Acids

14.83

Weight (kDa)

10.12

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 160
AccB1I GGYRCC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 344
AccII CGCG 1 cut(s) 121
AciI CCGC 2 cut(s) 27, 158
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 22, 344
AgsI TTSAA 4 cut(s) 274, 304, 310, 365
AluBI AGCT 2 cut(s) 98, 328
AluI AGCT 2 cut(s) 98, 328
Alw21I GWGCWC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 2 cut(s) 206, 269
Asp718I GGTACC 1 cut(s) 160
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 13
AvaII GGWCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 281
BccI CCATC 1 cut(s) 24
BfaI CTAG 2 cut(s) 95, 99
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 344
BseGI GGATG 2 cut(s) 357, 382
BseLI CCNNNNNNNGG 2 cut(s) 22, 344
Bsh1236I CGCG 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 22, 344
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 281
BspACI CCGC 2 cut(s) 27, 158
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 80
BstF5I GGATG 2 cut(s) 357, 382
BstFNI CGCG 1 cut(s) 121
BstHHI GCGC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 257, 325
BstNSI RCATGY 1 cut(s) 239
BstUI CGCG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 357, 382
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 126, 253
Cac8I GCNNGC 1 cut(s) 80
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 161
CviAII CATG 4 cut(s) 83, 193, 236, 261
CviJI RGCY 5 cut(s) 70, 98, 319, 328, 348
CviKI_1 RGCY 5 cut(s) 70, 98, 319, 328, 348
CviQI GTAC 1 cut(s) 161
DraI TTTAAA 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 13
FaeI CATG 4 cut(s) 86, 196, 239, 264
FaqI GGGAC 1 cut(s) 203
FatI CATG 4 cut(s) 82, 192, 235, 260
FokI GGATG 2 cut(s) 344, 389
FspBI CTAG 2 cut(s) 95, 99
GlaI GCGC 1 cut(s) 120
HhaI GCGC 1 cut(s) 121
Hin1II CATG 4 cut(s) 86, 196, 239, 264
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 7, 201
Hpy188III TCNNGA 2 cut(s) 274, 393
HpyAV CCTTC 3 cut(s) 68, 177, 371
HpyCH4III ACNGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 325
Hsp92II CATG 4 cut(s) 86, 196, 239, 264
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 164
LpnPI CCDG 2 cut(s) 84, 237
LweI GCATC 1 cut(s) 367
MaeI CTAG 2 cut(s) 95, 99
MboII GAAGA 1 cut(s) 158
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 2 cut(s) 135, 305
MlyI GAGTC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 2 cut(s) 330, 351
MroXI GAANNNNTTC 2 cut(s) 206, 269
MseI TTAA 2 cut(s) 173, 284
MslI CAYNNNNRTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 206
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 257, 325
NlaIII CATG 4 cut(s) 86, 196, 239, 264
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 239
PctI GAATGC 1 cut(s) 206
PdmI GAANNNNTTC 2 cut(s) 206, 269
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 344
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 173, 284
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 328
SduI GDGCHC 1 cut(s) 281
SetI ASST 5 cut(s) 37, 100, 169, 330, 343
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 2 cut(s) 135, 305
SsiI CCGC 2 cut(s) 27, 158
SspMI CTAG 2 cut(s) 95, 99
TaaI ACNGT 1 cut(s) 130
TasI AATT 2 cut(s) 135, 305
Tru1I TTAA 2 cut(s) 173, 284
Tru9I TTAA 2 cut(s) 173, 284
TscAI CASTG 2 cut(s) 133, 253
TspDTI ATGAA 5 cut(s) 94, 159, 199, 236, 346
TspRI CASTG 2 cut(s) 133, 253
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 239
XmnI GAANNNNTTC 2 cut(s) 206, 269
XspI CTAG 2 cut(s) 95, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.