Rroxscaffold_5G00337440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000321
Physical Location & Seq
Reverse (-)
5591803 .. 5596713
4911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337440.1

Sequence Viewer

Length: 747 bp
ATGTTGGAACAACAGTTGGAAGTTATGCAAAACCAGATCAACATGTTTGCTTCATTATTGGATCCAGAGAAGTTGGATGCAGCTAAACTAAGCATGATGCGAGACATGTTCAAATCTAATAATGGATCTGAAAAAGCTAGCTGCTCGGTCGACAAGGAGAAAAATCAGTCTTCTAAGGAGGAGGTATCTAATGTGGCATCCAAGAAAGAAATTGAAAAAAAAGCTACTGAAAAAAAGGTTCAAAAAGCAAAACAACAATCCAAAGGGGGGCTAATGACGAGAGAGATAGCCGCATTGGAAGATGACAATGTGATAACATCAACGGATAAAGCATATATTCCTATCCGGACAACAAATGTTGTAAAAAAGAGTAAAACTACGGCGTCTTCTTTGCGGGCTCCTAAATTCAGATCGGCTCTTGTGGTGCCTTCTTTGTCGCAGATTCCTTCAAAGATCACCATGGATGGCGGCGTGGTGGCTCGTGTCCTACTAGATTTCCTACCTCTTGATGGTGGTGGCTTGGTTAGGCTAAGGCGAGCGCGGCTCAAAGATCAAGGTTCGTCTCTAGAGGCGTGGGCAATTCTGTTTCGATCATGGCGGCGGGGCTCTAAGTGCTCATTCGGGTCGGGTCGGTTTCGTTCGGGTCTACTCTCCATGGAGGGCAGCACCCCCGTCGTGGACGTCTCCCGGATAATCGATAGTTGTTGGTCGTCCGGCGGCAAATGGAGAAATGTTGGGGTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.3

Weight (kDa)

9.88

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 684
AccB1I GGYRCC 1 cut(s) 424
AccI GTMKAC 2 cut(s) 150, 646
AccII CGCG 1 cut(s) 541
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 7 cut(s) 291, 394, 468, 541, 598, 601, 717
AclWI GGATC 3 cut(s) 56, 69, 133
AcsI RAATTY 1 cut(s) 404
AcyI GRCGYC 2 cut(s) 383, 681
AfiI CCNNNNNNNGG 3 cut(s) 267, 509, 676
AflIII ACRYGT 2 cut(s) 42, 105
AgsI TTSAA 4 cut(s) 112, 215, 242, 450
AluBI AGCT 4 cut(s) 83, 137, 141, 224
AluI AGCT 4 cut(s) 83, 137, 141, 224
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 3 cut(s) 96, 567, 688
AlwI GGATC 3 cut(s) 56, 69, 133
Aor13HI TCCGGA 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 80, 141, 663
ApoI RAATTY 1 cut(s) 404
AspLEI GCGC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 1 cut(s) 448
AsuNHI GCTAGC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 2 cut(s) 400, 608
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 162, 378
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 3 cut(s) 92, 128, 675
BccI CCATC 2 cut(s) 458, 503
BceAI ACGGC 1 cut(s) 396
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BcnI CCSGG 1 cut(s) 688
BcoDI GTCTC 3 cut(s) 96, 567, 688
BfaI CTAG 3 cut(s) 138, 491, 566
BisI GCNGC 8 cut(s) 81, 142, 291, 469, 542, 599, 664, 718
BlsI GCNGC 8 cut(s) 82, 143, 292, 470, 543, 600, 665, 719
Bme1390I CCNGG 1 cut(s) 688
BmiI GGNNCC 3 cut(s) 63, 399, 426
BmrFI CCNGG 1 cut(s) 688
BmsI GCATC 3 cut(s) 67, 87, 206
BmtI GCTAGC 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 162, 378
BplI GAGNNNNNCTC 2 cut(s) 528, 560
Bpu10I CCTNAGC 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 688
Bsa29I ATCGAT 1 cut(s) 696
BsaHI GRCGYC 2 cut(s) 383, 681
BsaJI CCNNGG 2 cut(s) 459, 654
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 509, 676
BseAI TCCGGA 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 2 cut(s) 459, 654
BseGI GGATG 3 cut(s) 82, 197, 469
BseLI CCNNNNNNNGG 3 cut(s) 267, 509, 676
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 92, 128, 675
Bsh1236I CGCG 1 cut(s) 541
Bsh1285I CGRYCG 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 696
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 617
BsiSI CCGG 3 cut(s) 346, 688, 714
BslI CCNNNNNNNGG 3 cut(s) 267, 509, 676
BsmAI GTCTC 3 cut(s) 96, 567, 688
BsmBI CGTCTC 2 cut(s) 567, 688
Bsp1286I GDGCHC 3 cut(s) 400, 608, 617
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
Bsp19I CCATGG 2 cut(s) 459, 654
BspACI CCGC 7 cut(s) 291, 394, 468, 541, 598, 601, 717
BspDI ATCGAT 1 cut(s) 696
BspEI TCCGGA 1 cut(s) 345
BspFNI CGCG 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 63, 399, 426
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 56, 69, 133
BspT107I GGYRCC 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 459, 654
BssMI GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
BssNI GRCGYC 2 cut(s) 383, 681
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 459, 654
Bst2BI CACGAG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 15
BstACI GRCGYC 2 cut(s) 383, 681
BstC8I GCNNGC 3 cut(s) 139, 396, 537
BstDEI CTNAG 4 cut(s) 89, 174, 530, 609
BstDSI CCRYGG 2 cut(s) 459, 654
BstF5I GGATG 3 cut(s) 82, 197, 469
BstFNI CGCG 1 cut(s) 541
BstHHI GCGC 1 cut(s) 541
BstKTI GATC 7 cut(s) 39, 64, 128, 413, 456, 553, 593
BstMAI GTCTC 3 cut(s) 96, 567, 688
BstMBI GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 541, 612
BstNSI RCATGY 2 cut(s) 46, 109
BstSCI CCNGG 1 cut(s) 686
BstUI CGCG 1 cut(s) 541
BstV1I GCAGC 3 cut(s) 92, 128, 675
BstV2I GAAGAC 2 cut(s) 162, 378
BstX2I RGATCY 2 cut(s) 61, 125
BstYI RGATCY 2 cut(s) 61, 125
Bsu15I ATCGAT 1 cut(s) 696
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 2 cut(s) 459, 654
BtsCI GGATG 3 cut(s) 82, 197, 469
Cac8I GCNNGC 3 cut(s) 139, 396, 537
CfoI GCGC 1 cut(s) 541
ClaI ATCGAT 1 cut(s) 696
CseI GACGC 1 cut(s) 372
CviAII CATG 6 cut(s) 43, 94, 106, 460, 594, 655
DdeI CTNAG 4 cut(s) 89, 174, 530, 609
DpnI GATC 7 cut(s) 38, 63, 127, 412, 455, 552, 592
DpnII GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
Eco130I CCWWGG 2 cut(s) 459, 654
Eco24I GRGCYC 2 cut(s) 400, 608
EcoT14I CCWWGG 2 cut(s) 459, 654
EcoT38I GRGCYC 2 cut(s) 400, 608
ErhI CCWWGG 2 cut(s) 459, 654
Esp3I CGTCTC 2 cut(s) 567, 688
FaeI CATG 6 cut(s) 46, 97, 109, 463, 597, 658
FaiI YATR 9 cut(s) 26, 44, 95, 107, 334, 336, 461, 595, 656
FatI CATG 6 cut(s) 42, 93, 105, 459, 593, 654
FauI CCCGC 2 cut(s) 387, 594
FblI GTMKAC 2 cut(s) 150, 646
Fnu4HI GCNGC 8 cut(s) 81, 142, 291, 469, 542, 599, 664, 718
FokI GGATG 3 cut(s) 89, 184, 476
FriOI GRGCYC 2 cut(s) 400, 608
Fsp4HI GCNGC 8 cut(s) 81, 142, 291, 469, 542, 599, 664, 718
FspBI CTAG 3 cut(s) 138, 491, 566
GlaI GCGC 1 cut(s) 540
GluI GCNGC 8 cut(s) 81, 142, 291, 469, 542, 599, 664, 718
HapII CCGG 3 cut(s) 346, 688, 714
HgaI GACGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 541
Hin1I GRCGYC 2 cut(s) 383, 681
Hin1II CATG 6 cut(s) 46, 97, 109, 463, 597, 658
Hin6I GCGC 1 cut(s) 539
HinP1I GCGC 1 cut(s) 539
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 1 cut(s) 442
HpaII CCGG 3 cut(s) 346, 688, 714
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 3 cut(s) 151, 647, 679
Hpy188I TCNGA 2 cut(s) 130, 410
Hpy188III TCNNGA 4 cut(s) 65, 346, 506, 566
Hpy8I GTNNAC 3 cut(s) 151, 647, 679
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 2 cut(s) 438, 456
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 681
HpyCH4V TGCA 2 cut(s) 28, 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 541, 612
HpyF3I CTNAG 4 cut(s) 89, 174, 530, 609
HpySE526I ACGT 1 cut(s) 681
Hsp92I GRCGYC 2 cut(s) 383, 681
Hsp92II CATG 6 cut(s) 46, 97, 109, 463, 597, 658
HspAI GCGC 1 cut(s) 539
Kpn2I TCCGGA 1 cut(s) 345
Kzo9I GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 5 cut(s) 47, 78, 359, 701, 727
Lsp1109I GCAGC 3 cut(s) 92, 128, 675
LweI GCATC 3 cut(s) 67, 87, 206
MaeI CTAG 3 cut(s) 138, 491, 566
MaeII ACGT 1 cut(s) 681
MalI GATC 7 cut(s) 38, 63, 127, 412, 455, 552, 592
MboI GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
MboII GAAGA 3 cut(s) 162, 311, 378
MflI RGATCY 2 cut(s) 61, 125
MhlI GDGCHC 3 cut(s) 400, 608, 617
MluCI AATT 3 cut(s) 210, 404, 579
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 172, 175, 513, 562, 652
MroI TCCGGA 1 cut(s) 345
MspI CCGG 3 cut(s) 346, 688, 714
MspR9I CCNGG 1 cut(s) 688
MvnI CGCG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 541, 612
NciI CCSGG 1 cut(s) 688
NcoI CCATGG 2 cut(s) 459, 654
NdeII GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 6 cut(s) 46, 97, 109, 463, 597, 658
NlaIV GGNNCC 3 cut(s) 63, 399, 426
NspI RCATGY 2 cut(s) 46, 109
PciI ACATGT 2 cut(s) 42, 105
PfeI GAWTC 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 686
PkrI GCNGC 8 cut(s) 82, 143, 292, 470, 543, 600, 665, 719
PscI ACATGT 2 cut(s) 42, 105
PspN4I GGNNCC 3 cut(s) 63, 399, 426
PsuI RGATCY 2 cut(s) 61, 125
SalI GTCGAC 1 cut(s) 149
SatI GCNGC 8 cut(s) 81, 142, 291, 469, 542, 599, 664, 718
Sau3AI GATC 7 cut(s) 36, 61, 125, 410, 453, 550, 590
ScrFI CCNGG 1 cut(s) 688
SduI GDGCHC 3 cut(s) 400, 608, 617
SetI ASST 9 cut(s) 85, 139, 143, 186, 226, 240, 505, 559, 684
SfaNI GCATC 3 cut(s) 67, 87, 206
Sse9I AATT 3 cut(s) 210, 404, 579
SsiI CCGC 7 cut(s) 291, 394, 468, 541, 598, 601, 717
SspMI CTAG 3 cut(s) 138, 491, 566
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 2 cut(s) 459, 654
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 1 cut(s) 684
TaqI TCGA 3 cut(s) 150, 589, 696
TaqII GACCGA 1 cut(s) 136
TasI AATT 3 cut(s) 210, 404, 579
TauI GCSGC 5 cut(s) 293, 471, 544, 601, 720
TfiI GAWTC 1 cut(s) 442
TseI GCWGC 3 cut(s) 80, 141, 663
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 338
XapI RAATTY 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 2 cut(s) 46, 109
XmiI GTMKAC 2 cut(s) 150, 646
XspI CTAG 3 cut(s) 138, 491, 566
ZraI GACGTC 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.