Rh6BG138100

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000321
Physical Location & Seq
Reverse (-)
22084490 .. 22085060
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG138100.1

Sequence Viewer

Length: 474 bp
ATGGATCCAGAAGAAGAAAATCATGCTTCTGAAGATTACTTGTCATCTGATGAGAAGAAGGGAAGAGGTCCAACTCTGATGTCCGACATTATTCATGGCAGGAGTAAGGGGGCTCAAATGGAAGTGACATATAACAAAAAGGGGCAACCAATTGGTCTTGGAGGGAAGAGGCTAGCTACTTTTATTGGGGTAATGGCTCGAACTACTATCCCAATCACATATGAGACTTGGCCAGCCGTGAAGAAATCACTTAAAGAAGTGATATGGAGTATGGTTCAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTATTGAGTAGTGCAGGAAGGAAATGGAAATCATTCAAGAGCACTTTAACAATAAAATATATATTGAAGTATAAAGATCGATGGAGCCTCCTAAAGAAAAAACCTGAAGAATATGAATTTATCACTCAACCTCAGTGGGGAGCTTTTGTGAAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

157

Amino Acids

17.99

Weight (kDa)

9.74

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 290, 303
AcoI YGGCCR 1 cut(s) 230
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 2 cut(s) 51, 441
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 2 cut(s) 352, 382
AluBI AGCT 2 cut(s) 176, 458
AluI AGCT 2 cut(s) 176, 458
Alw21I GWGCWC 1 cut(s) 359
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 3 cut(s) 12, 290, 303
AoxI GGCC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 431
Asp700I GAANNNNTTC 2 cut(s) 284, 347
AspS9I GGNCC 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 232
BamHI GGATCC 2 cut(s) 4, 295
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 359
BccI CCATC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 3 cut(s) 6, 297, 401
BmtI GCTAGC 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 394
BsaXI ACNNNNNCTCC 1 cut(s) 447
Bsc4I CCNNNNNNNGG 1 cut(s) 452
BseCI ATCGAT 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 232
BshVI ATCGAT 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 232
Bsp1286I GDGCHC 2 cut(s) 115, 359
Bsp143I GATC 3 cut(s) 4, 295, 391
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 460
BspDI ATCGAT 1 cut(s) 394
BspLI GGNNCC 3 cut(s) 6, 297, 401
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 3 cut(s) 12, 290, 303
BssMI GATC 3 cut(s) 4, 295, 391
Bst6I CTCTTC 2 cut(s) 58, 161
BstC8I GCNNGC 2 cut(s) 174, 234
BstDEI CTNAG 1 cut(s) 447
BstKTI GATC 3 cut(s) 7, 298, 394
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 4, 295, 391
BstX2I RGATCY 2 cut(s) 4, 295
BstYI RGATCY 2 cut(s) 4, 295
Bsu15I ATCGAT 1 cut(s) 394
BsuRI GGCC 1 cut(s) 232
BsuTUI ATCGAT 1 cut(s) 394
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 2 cut(s) 174, 234
Cfr13I GGNCC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 394
CspCI CAANNNNNGTGG 2 cut(s) 431, 466
CviAII CATG 2 cut(s) 23, 95
CviJI RGCY 8 cut(s) 113, 172, 176, 197, 232, 236, 402, 458
CviKI_1 RGCY 8 cut(s) 113, 172, 176, 197, 232, 236, 402, 458
DdeI CTNAG 1 cut(s) 447
DpnI GATC 3 cut(s) 6, 297, 393
DpnII GATC 3 cut(s) 4, 295, 391
EaeI YGGCCR 1 cut(s) 230
Eam1104I CTCTTC 2 cut(s) 58, 161
EarI CTCTTC 2 cut(s) 58, 161
Eco24I GRGCYC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 51, 441
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 2 cut(s) 26, 98
FatI CATG 2 cut(s) 22, 94
FauNDI CATATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 2 cut(s) 26, 98
Hpy188I TCNGA 5 cut(s) 31, 49, 78, 85, 279
Hpy188III TCNNGA 3 cut(s) 8, 352, 471
HpyAV CCTTC 2 cut(s) 52, 327
HpyCH4V TGCA 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 2 cut(s) 26, 98
Kzo9I GATC 3 cut(s) 4, 295, 391
LmnI GCTCC 2 cut(s) 399, 455
LpnPI CCDG 5 cut(s) 21, 85, 246, 315, 432
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 124
MalI GATC 3 cut(s) 6, 297, 393
MboI GATC 3 cut(s) 4, 295, 391
MboII GAAGA 8 cut(s) 23, 26, 44, 67, 75, 178, 253, 434
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 2 cut(s) 4, 295
MhlI GDGCHC 2 cut(s) 115, 359
MlsI TGGCCA 1 cut(s) 232
MluCI AATT 2 cut(s) 150, 431
MluNI TGGCCA 1 cut(s) 232
MmeI TCCRAC 2 cut(s) 95, 108
MnlI CCTC 5 cut(s) 59, 155, 162, 413, 456
Mox20I TGGCCA 1 cut(s) 232
MroXI GAANNNNTTC 2 cut(s) 284, 347
MscI TGGCCA 1 cut(s) 232
MseI TTAA 2 cut(s) 252, 362
Msp20I TGGCCA 1 cut(s) 232
MunI CAATTG 1 cut(s) 150
NdeI CATATG 1 cut(s) 220
NdeII GATC 3 cut(s) 4, 295, 391
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 2 cut(s) 26, 98
NlaIV GGNNCC 3 cut(s) 6, 297, 401
NmuCI GTSAC 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 284, 347
PspN4I GGNNCC 3 cut(s) 6, 297, 401
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 2 cut(s) 4, 295
SaqAI TTAA 2 cut(s) 252, 362
Sau3AI GATC 3 cut(s) 4, 295, 391
Sau96I GGNCC 1 cut(s) 68
SduI GDGCHC 2 cut(s) 115, 359
SetI ASST 5 cut(s) 70, 178, 421, 448, 460
SinI GGWCC 1 cut(s) 68
Sse9I AATT 2 cut(s) 150, 431
SspMI CTAG 1 cut(s) 173
TaqI TCGA 2 cut(s) 199, 394
TasI AATT 2 cut(s) 150, 431
Tru1I TTAA 2 cut(s) 252, 362
Tru9I TTAA 2 cut(s) 252, 362
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 83, 277, 444
TspRI CASTG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 284, 347
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.