RchiOBHm_Chr1g0318241

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000321
Physical Location & Seq
Forward (+)
5681130 .. 5682943
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54853

Sequence Viewer

Length: 717 bp
ATGCCGGTTTCTGTGCATCTTCTACTGCGCTTGGCAAGAATAATGGATGAATCTATAGCAGTGTCGGTCCCAATGGAAGATGGTGTGTTTGGCAATGACCACAATACATTCATAAACAGTAACGACATGATCCAATTTTGTTTGATGCAGCCAATATCCACTATTTGCATTTCTATCTACATGAGACACCTCTGGTCATTGTTGAAAATGAAGAATGAGGATCACTTGTATGCATTTGTAGATCCTGGCCGCATCTCCAATGAAGCTGGAAAGGTTGAGTCTAGATCATGTGCCCTATCACTTAGATTAGAGTCTGCCCAAGTAGATCAATTAATTCTTGCGCCTTATAATACAGGGAATCATTGGTTGTTGGCTGCCATTAACCCATATACTGCGTTGCTCTATTACTTTGACCCATTGAGTAACATTAACATCAATCCAGGAATGAAGAACATTGTAGAGCTTTCCATTAAGATGTTTAATGCTCAAAAGGGAAGAAAGAATCGTAAAAAAGTTCATTGGGAGGTGGTTAAGTGTCCAAGACAACCTGGATTAGTGGAATGTGGATATTATGTCATGAAATACATGAAAGAAATTATTGGAACTCCAAGCCGCTCAATTTTAAATATGTTTGAGGAAAAAGAGACTTATACTCAAGAAGAGATTGATGTAGTTCGAGTAGAGTGGGCAGAACAGGTTGATGGATATATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

238

Amino Acids

27.4

Weight (kDa)

6.31

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 111 - 234 3.5e-12 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221 FvH4_1g20221
prunus_persica Prupe.6G157700_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1 Prupe.6G193600_v2.0.a1
pyrus_communis pycom03g09490 pycom03g19580 pycom07g21940 pycom07g27440 pycom14g09710
rosa_chinensis RchiOBHm_Chr1g0318231 RchiOBHm_Chr1g0318241 RchiOBHm_Chr1g0325001 RchiOBHm_Chr1g0325021 RchiOBHm_Chr2g0112301 RchiOBHm_Chr3g0482281 RchiOBHm_Chr3g0482291 RchiOBHm_Chr4g0390561 RchiOBHm_Chr4g0390571 RchiOBHm_Chr4g0417951 RchiOBHm_Chr7g0232611 RchiOBHm_Chr7g0240601
rosa_laevigata RLG00000001069 RLG00000013674 RLG00000018830 RLG00000020747
rosa_multiflora Rmu_co8364947.1_g000001 Rmu_co8416715.1_g000001 Rmu_sc0001348.1_g000014 Rmu_sc0002986.1_g000026 Rmu_sc0004003.1_g000007 Rmu_sc0005137.1_g000014 Rmu_sc0006583.1_g000016
rosa_roxburghii Rroxscaffold_159G00432800 Rroxscaffold_174G00435170 Rroxscaffold_1G00001870 Rroxscaffold_1G00044480 Rroxscaffold_2G00111880 Rroxscaffold_2G00111890 Rroxscaffold_2G00119670 Rroxscaffold_2G00129450 Rroxscaffold_2G00131520 Rroxscaffold_3G00240880 Rroxscaffold_5G00337440 Rroxscaffold_5G00356220 Rroxscaffold_5G00362390 Rroxscaffold_5G00368260 Rroxscaffold_7G00196230 Rroxscaffold_7G00196240 Rroxscaffold_7G00202020
rosa_rugosa Rorug01G0094700 Rorug02G0050500 Rorug02G0179800 Rorug05G0042800 Rorug05G0043000 Rorug05G0043100 Rorug05G0043200 Rorug06G0045300 Rorug06G0045600 Rorug06G0069400 Rorug07G0213000 Rorug07G0213000
rosa_samantha Rh1AG031600 Rh1DG131700 Rh1DG134800 Rh1DG288000 Rh1DG288100 Rh2AG218500 Rh2AG232500 Rh2BG245900 Rh2CG236700 Rh2DG224300 Rh2DG224400 Rh2DG240200 Rh3AG247300 Rh3BG126600 Rh3BG126700 Rh3BG333600 Rh5AG440500 Rh5AG440600 Rh5BG457800 Rh5DG472700 Rh5DG472800 Rh6BG138000 Rh6BG138100 Rh6BG171500 Rh6BG188400 Rh6BG230000 Rh6CG135600 Rh6CG135700 Rh6CG186300 Rh6CG450300 Rh7AG376100 Rh7CG394800 Rh7CG426100 Rh7CG426200 Rh7DG247700 Rh7DG322600 Rh7DG334300 Rh7DG364700
rosa_wichuraiana Rw2G018040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 615
AciI CCGC 2 cut(s) 250, 613
AclWI GGATC 3 cut(s) 124, 228, 236
AcoI YGGCCR 1 cut(s) 247
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 3 cut(s) 244, 439, 547
AluBI AGCT 2 cut(s) 266, 463
AluI AGCT 2 cut(s) 266, 463
Alw26I GTCTC 2 cut(s) 178, 638
AlwI GGATC 3 cut(s) 124, 228, 236
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 148, 374
AseI ATTAAT 1 cut(s) 332
AspLEI GCGC 2 cut(s) 30, 343
AspS9I GGNCC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 160, 361
BccI CCATC 2 cut(s) 74, 695
BciT130I CCWGG 3 cut(s) 246, 441, 549
BcoDI GTCTC 2 cut(s) 178, 638
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 4 cut(s) 149, 250, 375, 613
BlsI GCNGC 4 cut(s) 150, 251, 376, 614
Bme1390I CCNGG 3 cut(s) 246, 441, 549
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 3 cut(s) 246, 441, 549
BmsI GCATC 3 cut(s) 25, 135, 261
BpuEI CTTGAG 1 cut(s) 639
Bse118I RCCGGY 1 cut(s) 4
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 3 cut(s) 246, 441, 549
BseGI GGATG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 160, 361
BshFI GGCC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 178, 638
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 5 cut(s) 129, 220, 241, 284, 325
BspACI CCGC 2 cut(s) 250, 613
BspANI GGCC 1 cut(s) 249
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 3 cut(s) 124, 228, 236
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 5 cut(s) 129, 220, 241, 284, 325
Bst2UI CCWGG 3 cut(s) 246, 441, 549
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 654
BstDEI CTNAG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 52
BstHHI GCGC 2 cut(s) 30, 343
BstKTI GATC 5 cut(s) 132, 223, 244, 287, 328
BstMAI GTCTC 2 cut(s) 178, 638
BstMBI GATC 5 cut(s) 129, 220, 241, 284, 325
BstNI CCWGG 3 cut(s) 246, 441, 549
BstSCI CCNGG 3 cut(s) 244, 439, 547
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 160, 361
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
CciI TCATGA 1 cut(s) 576
CfoI GCGC 2 cut(s) 30, 343
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 5 cut(s) 127, 181, 288, 577, 586
CviJI RGCY 6 cut(s) 151, 249, 266, 374, 463, 612
CviKI_1 RGCY 6 cut(s) 151, 249, 266, 374, 463, 612
DdeI CTNAG 1 cut(s) 302
DpnI GATC 5 cut(s) 131, 222, 243, 286, 327
DpnII GATC 5 cut(s) 129, 220, 241, 284, 325
DraI TTTAAA 1 cut(s) 624
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 244, 439, 547
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 5 cut(s) 130, 184, 291, 580, 589
FaqI GGGAC 1 cut(s) 53
FatI CATG 5 cut(s) 126, 180, 287, 576, 585
Fnu4HI GCNGC 4 cut(s) 149, 250, 375, 613
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 149, 250, 375, 613
FspBI CTAG 1 cut(s) 282
GlaI GCGC 2 cut(s) 29, 342
GluI GCNGC 4 cut(s) 149, 250, 375, 613
HaeIII GGCC 1 cut(s) 249
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 30, 343
Hin1II CATG 5 cut(s) 130, 184, 291, 580, 589
Hin6I GCGC 2 cut(s) 28, 341
HinP1I GCGC 2 cut(s) 28, 341
HinfI GANTC 5 cut(s) 50, 278, 311, 358, 502
HpaII CCGG 1 cut(s) 5
Hpy188III TCNNGA 3 cut(s) 282, 577, 656
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 4 cut(s) 16, 148, 168, 233
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 5 cut(s) 130, 184, 291, 580, 589
HspAI GCGC 2 cut(s) 28, 341
Kzo9I GATC 5 cut(s) 129, 220, 241, 284, 325
Lsp1109I GCAGC 2 cut(s) 160, 361
LweI GCATC 3 cut(s) 25, 135, 261
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 119, 422
MalI GATC 5 cut(s) 131, 222, 243, 286, 327
MbiI CCGCTC 1 cut(s) 615
MboI GATC 5 cut(s) 129, 220, 241, 284, 325
MboII GAAGA 6 cut(s) 11, 89, 223, 460, 507, 671
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 5 cut(s) 134, 329, 333, 594, 618
MlyI GAGTC 2 cut(s) 287, 320
MnlI CCTC 4 cut(s) 200, 211, 517, 628
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 7 cut(s) 332, 381, 429, 471, 480, 531, 623
MslI CAYNNNNRTG 2 cut(s) 228, 473
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 3 cut(s) 246, 441, 549
MvaI CCWGG 3 cut(s) 246, 441, 549
NdeII GATC 5 cut(s) 129, 220, 241, 284, 325
NlaIII CATG 5 cut(s) 130, 184, 291, 580, 589
NlaIV GGNNCC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 1 cut(s) 576
PfeI GAWTC 3 cut(s) 50, 358, 502
PfoI TCCNGGA 1 cut(s) 439
PkrI GCNGC 4 cut(s) 150, 251, 376, 614
PleI GAGTC 2 cut(s) 286, 319
PpsI GAGTC 2 cut(s) 286, 319
PshBI ATTAAT 1 cut(s) 332
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 3 cut(s) 244, 439, 547
PspGI CCWGG 3 cut(s) 244, 439, 547
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 67
PsuI RGATCY 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 228, 473
SaqAI TTAA 7 cut(s) 332, 381, 429, 471, 480, 531, 623
SatI GCNGC 4 cut(s) 149, 250, 375, 613
Sau3AI GATC 5 cut(s) 129, 220, 241, 284, 325
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 287, 320
ScrFI CCNGG 3 cut(s) 246, 441, 549
SduI GDGCHC 1 cut(s) 295
SetI ASST 7 cut(s) 192, 268, 276, 465, 528, 550, 699
SfaNI GCATC 3 cut(s) 25, 135, 261
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 228, 473
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
Sse9I AATT 5 cut(s) 134, 329, 333, 594, 618
SsiI CCGC 2 cut(s) 250, 613
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 3 cut(s) 244, 439, 547
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 676
TaqII GACCGA 1 cut(s) 55
TasI AATT 5 cut(s) 134, 329, 333, 594, 618
TauI GCSGC 2 cut(s) 252, 615
TfiI GAWTC 3 cut(s) 50, 358, 502
Tru1I TTAA 7 cut(s) 332, 381, 429, 471, 480, 531, 623
Tru9I TTAA 7 cut(s) 332, 381, 429, 471, 480, 531, 623
TscAI CASTG 1 cut(s) 66
TseI GCWGC 2 cut(s) 148, 374
TspDTI ATGAA 8 cut(s) 63, 100, 224, 276, 461, 506, 593, 602
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 332
XbaI TCTAGA 1 cut(s) 281
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.