Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8064498.1

Orthogroup ID

OG0007290

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 571

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8064498.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 406 bp

atttcttgtcatattaacaacagtaagccttgcacatgcagtagaaatggcaactgagaaagaccaagatttcttctcccacaagcacccttctgcttctcaggtcatggaagaagttggagagctctggggcatggcccttcccataacggccatgaactgtctggtgttcgtccgagccgcggtgtcagtagtattcctgggccgtctcggcagcctggagctcgcgggaggcgccctctccatcgggttcaccaacatcaccggctactctgtcatggtcggcctcgcctccggcctcgaacccgtctgcagccaagcctacggcaacaagaactgggacctcctcactcgctccctgcagcgcatggtcctcatcctcgtcctcgcagcgttacccatctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

135

Amino Acids

14.42

Weight (kDa)

5.47

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71870
fragaria_vesca	FvH4_2g12380 FvH4_2g12380
malus_domestica	MD05G1039600.v1.1 MD10G1045100.v1.1
prunus_persica	Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1
pyrus_communis	pycom05g03230
rosa_chinensis	RchiOBHm_Chr6g0272411
rosa_laevigata	RLG00000013675
rosa_multiflora	Rmu_co8064498.1_g000001 Rmu_sc0000104.1_g000024 Rmu_sc0004003.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196270
rosa_rugosa	Rorug06G0069200 Rorug06G0069300 Rorug06G0069300 Rorug06G0069400
rosa_samantha	Rh6AG185000 Rh6BG188300 Rh6CG186200 Rh6DG178000
rosa_wichuraiana	Rw6G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	234
AccII	CGCG	2 cut(s)	183, 228
AciI	CCGC	3 cut(s)	181, 183, 228
AcoI	YGGCCR	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	199, 217
AluBI	AGCT	2 cut(s)	125, 224
AluI	AGCT	2 cut(s)	125, 224
Alw21I	GWGCWC	2 cut(s)	127, 226
Alw26I	GTCTC	1 cut(s)	213
AoxI	GGCC	5 cut(s)	136, 151, 203, 284, 296
ApeKI	GCWGC	4 cut(s)	214, 313, 362, 390
AspLEI	GCGC	2 cut(s)	237, 367
AspS9I	GGNCC	4 cut(s)	137, 203, 341, 371
AsuHPI	GGTGA	2 cut(s)	245, 254
AvaII	GGWCC	2 cut(s)	341, 371
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	2 cut(s)	127, 226
Bbv12I	GWGCWC	2 cut(s)	127, 226
BbvI	GCAGC	4 cut(s)	226, 325, 374, 402
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	3 cut(s)	166, 190, 341
BciT130I	CCWGG	2 cut(s)	201, 219
BcoDI	GTCTC	1 cut(s)	213
BfmI	CTRYAG	2 cut(s)	311, 360
BfoI	RGCGCY	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	211
BisI	GCNGC	5 cut(s)	181, 215, 314, 363, 391
BlsI	GCNGC	5 cut(s)	182, 216, 315, 364, 392
Bme1390I	CCNGG	2 cut(s)	201, 219
Bme18I	GGWCC	2 cut(s)	341, 371
BmgT120I	GGNCC	4 cut(s)	137, 203, 341, 371
BmiI	GGNNCC	2 cut(s)	236, 342
BmrFI	CCNGG	2 cut(s)	201, 219
BmrI	ACTGGG	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	181, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	201, 219
BseDI	CCNNGG	2 cut(s)	181, 200
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	46, 114
BseNI	ACTGG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	226, 325, 374, 402
Bsh1236I	CGCG	2 cut(s)	183, 228
BshFI	GGCC	5 cut(s)	138, 153, 205, 286, 298
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	127, 226
BsiSI	CCGG	2 cut(s)	265, 295
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	5 cut(s)	138, 153, 205, 286, 298
Bsp1286I	GDGCHC	2 cut(s)	127, 226
BspACI	CCGC	3 cut(s)	181, 183, 228
BspANI	GGCC	5 cut(s)	138, 153, 205, 286, 298
BspCNI	CTCAG	2 cut(s)	47, 113
BspFNI	CGCG	2 cut(s)	183, 228
BspLI	GGNNCC	2 cut(s)	236, 342
BspMAI	CTGCAG	2 cut(s)	315, 364
BspT107I	GGYRCC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	181, 200
BssNI	GRCGYC	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	201, 219
Bst4CI	ACNGT	2 cut(s)	23, 162
BstACI	GRCGYC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	55, 100
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	2 cut(s)	183, 228
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	237, 367
BstMAI	GTCTC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 234
BstNI	CCWGG	2 cut(s)	201, 219
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	199, 217
BstSFI	CTRYAG	2 cut(s)	311, 360
BstUI	CGCG	2 cut(s)	183, 228
BstV1I	GCAGC	4 cut(s)	226, 325, 374, 402
BsuRI	GGCC	5 cut(s)	138, 153, 205, 286, 298
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	2 cut(s)	237, 367
Cfr10I	RCCGGY	1 cut(s)	264
Cfr13I	GGNCC	4 cut(s)	137, 203, 341, 371
Cfr42I	CCGCGG	1 cut(s)	184
CviAII	CATG	6 cut(s)	36, 107, 134, 155, 278, 368
DdeI	CTNAG	2 cut(s)	55, 100
DinI	GGCGCC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	151
Ecl136II	GAGCTC	2 cut(s)	125, 224
Eco24I	GRGCYC	2 cut(s)	127, 226
Eco47I	GGWCC	2 cut(s)	341, 371
Eco53kI	GAGCTC	2 cut(s)	125, 224
EcoICRI	GAGCTC	2 cut(s)	125, 224
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	199, 217
EcoT38I	GRGCYC	2 cut(s)	127, 226
EgeI	GGCGCC	1 cut(s)	236
EheI	GGCGCC	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	6 cut(s)	39, 110, 137, 158, 281, 371
FaiI	YATR	8 cut(s)	12, 37, 108, 135, 147, 156, 279, 369
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	6 cut(s)	35, 106, 133, 154, 277, 367
FauI	CCCGC	1 cut(s)	221
Fnu4HI	GCNGC	5 cut(s)	181, 215, 314, 363, 391
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	2 cut(s)	127, 226
Fsp4HI	GCNGC	5 cut(s)	181, 215, 314, 363, 391
GlaI	GCGC	2 cut(s)	236, 366
GluI	GCNGC	5 cut(s)	181, 215, 314, 363, 391
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	5 cut(s)	138, 153, 205, 286, 298
HapII	CCGG	2 cut(s)	265, 295
HhaI	GCGC	2 cut(s)	237, 367
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	6 cut(s)	39, 110, 137, 158, 281, 371
Hin6I	GCGC	2 cut(s)	235, 365
HinP1I	GCGC	2 cut(s)	235, 365
HpaII	CCGG	2 cut(s)	265, 295
HphI	GGTGA	2 cut(s)	245, 254
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	100, 150
HpyCH4III	ACNGT	2 cut(s)	23, 162
HpyCH4V	TGCA	4 cut(s)	33, 39, 313, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 234
HpyF3I	CTNAG	2 cut(s)	55, 100
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	6 cut(s)	39, 110, 137, 158, 281, 371
HspAI	GCGC	2 cut(s)	235, 365
KasI	GGCGCC	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	221, 360
Lsp1109I	GCAGC	4 cut(s)	226, 325, 374, 402
MaeIII	GTNAC	1 cut(s)	394
MboII	GAAGA	2 cut(s)	65, 123
MhlI	GDGCHC	2 cut(s)	127, 226
Mly113I	GGCGCC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	98
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	2 cut(s)	265, 295
MspR9I	CCNGG	2 cut(s)	201, 219
MvaI	CCWGG	2 cut(s)	201, 219
MvnI	CGCG	2 cut(s)	183, 228
MwoI	GCNNNNNNNGC	2 cut(s)	211, 234
NarI	GGCGCC	1 cut(s)	235
NlaIII	CATG	6 cut(s)	39, 110, 137, 158, 281, 371
NlaIV	GGNNCC	2 cut(s)	236, 342
NmeAIII	GCCGAG	1 cut(s)	190
NspI	RCATGY	1 cut(s)	39
PkrI	GCNGC	5 cut(s)	182, 216, 315, 364, 392
PluTI	GGCGCC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	341
Psp124BI	GAGCTC	2 cut(s)	127, 226
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	199, 217
PspGI	CCWGG	2 cut(s)	199, 217
PspN4I	GGNNCC	2 cut(s)	236, 342
PspPI	GGNCC	4 cut(s)	137, 203, 341, 371
PspPPI	RGGWCCY	1 cut(s)	341
PstI	CTGCAG	2 cut(s)	315, 364
SacI	GAGCTC	2 cut(s)	127, 226
SacII	CCGCGG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	181, 215, 314, 363, 391
Sau96I	GGNCC	4 cut(s)	137, 203, 341, 371
ScrFI	CCNGG	2 cut(s)	201, 219
SduI	GDGCHC	2 cut(s)	127, 226
SetI	ASST	4 cut(s)	106, 127, 226, 346
SfcI	CTRYAG	2 cut(s)	311, 360
SfoI	GGCGCC	1 cut(s)	236
Sfr303I	CCGCGG	1 cut(s)	184
SgrBI	CCGCGG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	341, 371
SsiI	CCGC	3 cut(s)	181, 183, 228
SspDI	GGCGCC	1 cut(s)	234
SstI	GAGCTC	2 cut(s)	127, 226
StyD4I	CCNGG	2 cut(s)	199, 217
TaaI	ACNGT	2 cut(s)	23, 162
TaqI	TCGA	1 cut(s)	301
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseI	GCWGC	4 cut(s)	214, 313, 362, 390
TspDTI	ATGAA	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	341, 371
XceI	RCATGY	1 cut(s)	39
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.