Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007290

Physical Location & Seq

Genomic Coordinates Forward (+)

5702612 .. 5706861

Gene Structure 4250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGCAGATAAAGACCCTGATATTTGTTCCCACAAATTCCCTTCTGCTTTTCAGGTATTGGAAGAACTAAGAGAACTATGGGGCATGGCCTTTCCCATTACAGCCATGAACTGTTTGGTTTTTGTCCGAGCTGTGGTTTCAGTCCTATTTCTAGGCAGGCTTGGAAGCCTAGAGCTAGCAGGAGGTGCCCTCTCCATAGGCTTCACAAACATCACTGGCTACTCTGTGTTGGTGGGTCTTGCCTCAGGCCTAGAACCTGTTTGTAGCCAAGCCTATGGGAACAAAAATTGGGAGCTTCTCACTCTGTCCCTCCAAAGAATGGTCCTGATCCTTCTCTTGGCAATAATACCCATCAGCCTCTTATGGCTCAATCTTGAAACAATCATGGTGTTCATGGGACAAGACAAAGCAATCACATCAATGGCTGCCACTTACTGTTTGTATTCAATCCCAGACTTGTTAACAAACACAGTTTTGCAGCCTTTGAGGGTTTTTTTGAGGTCGCAGAAAGTGACCAAGCCAATGATGTACTGTTCAATGATAGCTGTGGCCTTCCACGTGCCCTTGAACTGGGTTTTGGTGGAGGTGATGGGGCTTGGAGTGCCAGGAGTGGCCATGGCGTCGGTGCTGACGAACCTGAACATGGTGGTGCTGATGGCAGCGTACGTGTGGTGGGGATGGAGGCAGGGGGAGATGAGATGGAAGGCCGGGATTGGAGATTTGTGTGGTGGGATTGGATCACTGTTGAAGTTGGCAGTGCCAAGCTGCTTGGGCATATGTTTGGAGTGGTGGTGGTATGAGATTGTGATTGTGATGGCTGGTTATTTGCCAAATCCTACTGTCGCTGTGGCCGCCACTGGGGTTCTTATTCAAACCACTAGCATGATGTACACTGTCCCCATGGCCCTTGCTGGCTGTGTTTCTGCCAGGGTTGGGAATGAGCTTGGTTCAGGCAAGCCATACAAGGCCAAGCTAGCAGCCATGGTAGCATTGGGATGTGCATTTGTGATTGGCATCGTCAATGTGACATGGACGGTGATTCTTAAAGAGAGGTGGGCTGGCCTGTTCACCAAAGACGAGCTGGTCAAAATCTTGGTTGCATCAGTTATGCCAATTATGGGGCTTTGTGAGTTAGGCAACTGCCCTCAAACTACTGGCTGTGGCATCCTACGTGCCACAGCGCGCCCGGCTGTGGGTGCCCGTATCAATTTGGTCTCTTTCTATTTTGTGGGCACTCCTGTTGCGGTCGGGCTAGCCTTCTGGCTCAAGGTAGGGTTTGGTGGGCTTTGGTTTGGCCTTTTATCTGCTCAAGTGGCTTGTGCGGTGTCTATTCTCTATGTTGTGCTGGTCAAGACTGATTGGGAGGCTGAGGCTTTGAAGGCCAAGATGCTCACAGGCTTGGAAATGGGGGTTTGCAATGGGGTTAAAGAAAAAGGCCATCAAAATGATGAAGAAAACAGGTTATTGATGCATGGAGATGACAATAACAATAATAATATAGATGATGAGATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

506

Amino Acids

54.75

Weight (kDa)

6.45

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71870
fragaria_vesca	FvH4_2g12380 FvH4_2g12380
malus_domestica	MD05G1039600.v1.1 MD10G1045100.v1.1
prunus_persica	Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1
pyrus_communis	pycom05g03230
rosa_chinensis	RchiOBHm_Chr6g0272411
rosa_laevigata	RLG00000013675
rosa_multiflora	Rmu_co8064498.1_g000001 Rmu_sc0000104.1_g000024 Rmu_sc0004003.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196270
rosa_rugosa	Rorug06G0069200 Rorug06G0069300 Rorug06G0069300 Rorug06G0069400
rosa_samantha	Rh6AG185000 Rh6BG188300 Rh6CG186200 Rh6DG178000
rosa_wichuraiana	Rw6G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1082
AccB1I	GGYRCC	2 cut(s)	185, 1196
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccII	CGCG	1 cut(s)	1183
AciI	CCGC	3 cut(s)	852, 1244, 1322
AclWI	GGATC	2 cut(s)	322, 745
AcoI	YGGCCR	2 cut(s)	612, 849
AcsI	RAATTY	1 cut(s)	35
AcvI	CACGTG	1 cut(s)	559
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	3 cut(s)	530, 665, 890
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	7 cut(s)	377, 447, 537, 568, 748, 872, 1378
AjnI	CCWGG	2 cut(s)	604, 926
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	8 cut(s)	131, 175, 295, 545, 765, 943, 973, 1081
AluI	AGCT	8 cut(s)	131, 175, 295, 545, 765, 943, 973, 1081
Alw26I	GTCTC	1 cut(s)	1219
AlwI	GGATC	2 cut(s)	322, 745
ApeKI	GCWGC	5 cut(s)	425, 478, 659, 765, 977
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	1183, 1185
AspS9I	GGNCC	2 cut(s)	322, 904
AsuC2I	CCSGG	2 cut(s)	709, 1187
AsuHPI	GGTGA	3 cut(s)	598, 1048, 1060
AsuNHI	GCTAGC	3 cut(s)	175, 973, 1252
AvaII	GGWCC	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	244
BaeGI	GKGCMC	4 cut(s)	190, 564, 1201, 1235
BalI	TGGCCA	1 cut(s)	614
BanI	GGYRCC	2 cut(s)	185, 1196
BbrPI	CACGTG	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	1368
BbvI	GCAGC	5 cut(s)	412, 490, 671, 752, 989
BccI	CCATC	7 cut(s)	359, 583, 649, 672, 693, 808, 1446
BciT130I	CCWGG	2 cut(s)	606, 928
BcnI	CCSGG	2 cut(s)	709, 1187
BcoDI	GTCTC	1 cut(s)	1219
BfaI	CTAG	7 cut(s)	152, 170, 176, 251, 879, 974, 1253
BisI	GCNGC	6 cut(s)	426, 479, 660, 766, 852, 978
BlsI	GCNGC	6 cut(s)	427, 480, 661, 767, 853, 979
Bme1390I	CCNGG	4 cut(s)	606, 709, 928, 1187
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	322, 904
BmiI	GGNNCC	2 cut(s)	187, 1198
BmrFI	CCNGG	4 cut(s)	606, 709, 928, 1187
BmrI	ACTGGG	2 cut(s)	580, 867
BmsI	GCATC	5 cut(s)	1023, 1109, 1173, 1377, 1458
BmtI	GCTAGC	3 cut(s)	179, 977, 1256
BmuI	ACTGGG	2 cut(s)	580, 867
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
Bpu10I	CCTNAGC	1 cut(s)	1368
BpuEI	CTTGAG	2 cut(s)	1250, 1293
BpuMI	CCSGG	2 cut(s)	709, 1187
BsaAI	YACGTR	3 cut(s)	559, 667, 1172
BsaBI	GATNNNNATC	1 cut(s)	1013
BsaHI	GRCGYC	1 cut(s)	620
BsaI	GGTCTC	1 cut(s)	1219
BsaJI	CCNNGG	4 cut(s)	615, 900, 927, 981
BsaXI	ACNNNNNCTCC	2 cut(s)	776, 806
Bse1I	ACTGG	4 cut(s)	220, 575, 862, 1159
Bse21I	CCTNAGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	1423
Bse8I	GATNNNNATC	1 cut(s)	1013
BseBI	CCWGG	2 cut(s)	606, 928
BseDI	CCNNGG	4 cut(s)	615, 900, 927, 981
BseGI	GGATG	3 cut(s)	683, 1001, 1164
BseJI	GATNNNNATC	1 cut(s)	1013
BseMI	GCAATG	1 cut(s)	1423
BseMII	CTCAG	2 cut(s)	258, 1359
BseNI	ACTGG	4 cut(s)	220, 575, 862, 1159
BsePI	GCGCGC	1 cut(s)	1181
BseSI	GKGCMC	4 cut(s)	190, 564, 1201, 1235
BseXI	GCAGC	5 cut(s)	412, 490, 671, 752, 989
Bsh1236I	CGCG	1 cut(s)	1183
Bsh1285I	CGRYCG	1 cut(s)	1248
BshNI	GGYRCC	2 cut(s)	185, 1196
BsiEI	CGRYCG	1 cut(s)	1248
BsiSI	CCGG	2 cut(s)	708, 1187
BsiWI	CGTACG	1 cut(s)	663
BslFI	GGGAC	3 cut(s)	292, 411, 881
BsmAI	GTCTC	1 cut(s)	1219
BsmFI	GGGAC	3 cut(s)	292, 411, 881
Bso31I	GGTCTC	1 cut(s)	1219
Bsp1286I	GDGCHC	4 cut(s)	190, 564, 1201, 1235
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	2 cut(s)	327, 737
Bsp19I	CCATGG	3 cut(s)	615, 900, 981
BspACI	CCGC	3 cut(s)	852, 1244, 1322
BspCNI	CTCAG	2 cut(s)	257, 1360
BspFNI	CGCG	1 cut(s)	1183
BspLI	GGNNCC	2 cut(s)	187, 1198
BspOI	GCTAGC	3 cut(s)	179, 977, 1256
BspPI	GGATC	2 cut(s)	322, 745
BspT107I	GGYRCC	2 cut(s)	185, 1196
BspTNI	GGTCTC	1 cut(s)	1219
BsrDI	GCAATG	1 cut(s)	1423
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	4 cut(s)	220, 575, 862, 1159
BssECI	CCNNGG	4 cut(s)	615, 900, 927, 981
BssHII	GCGCGC	1 cut(s)	1181
BssMI	GATC	2 cut(s)	327, 737
BssNI	GRCGYC	1 cut(s)	620
BssT1I	CCWWGG	3 cut(s)	615, 900, 981
Bst2UI	CCWGG	2 cut(s)	606, 928
Bst4CI	ACNGT	8 cut(s)	113, 437, 472, 533, 744, 841, 895, 1036
BstACI	GRCGYC	1 cut(s)	620
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	888
BstBAI	YACGTR	3 cut(s)	559, 667, 1172
BstC8I	GCNNGC	8 cut(s)	158, 177, 913, 956, 975, 1060, 1183, 1254
BstDEI	CTNAG	3 cut(s)	68, 244, 1368
BstDSI	CCRYGG	3 cut(s)	615, 900, 981
BstF5I	GGATG	3 cut(s)	683, 1001, 1164
BstFNI	CGCG	1 cut(s)	1183
BstHHI	GCGC	2 cut(s)	1183, 1185
BstKTI	GATC	2 cut(s)	330, 740
BstMAI	GTCTC	1 cut(s)	1219
BstMBI	GATC	2 cut(s)	327, 737
BstMCI	CGRYCG	1 cut(s)	1248
BstNI	CCWGG	2 cut(s)	606, 928
BstSCI	CCNGG	4 cut(s)	604, 707, 926, 1185
BstSLI	GKGCMC	4 cut(s)	190, 564, 1201, 1235
BstUI	CGCG	1 cut(s)	1183
BstV1I	GCAGC	5 cut(s)	412, 490, 671, 752, 989
BstXI	CCANNNNNNTGG	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	244
BtgI	CCRYGG	3 cut(s)	615, 900, 981
BtsCI	GGATG	3 cut(s)	683, 1001, 1164
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	5 cut(s)	213, 740, 762, 855, 891
Cac8I	GCNNGC	8 cut(s)	158, 177, 913, 956, 975, 1060, 1183, 1254
CfoI	GCGC	2 cut(s)	1183, 1185
Cfr13I	GGNCC	2 cut(s)	322, 904
CseI	GACGC	1 cut(s)	609
Csp6I	GTAC	3 cut(s)	529, 664, 889
CviQI	GTAC	3 cut(s)	529, 664, 889
DdeI	CTNAG	3 cut(s)	68, 244, 1368
DpnI	GATC	2 cut(s)	329, 739
DpnII	GATC	2 cut(s)	327, 737
DrdI	GACNNNNNNGTC	1 cut(s)	1082
DseDI	GACNNNNNNGTC	1 cut(s)	1082
EaeI	YGGCCR	2 cut(s)	612, 849
Eco130I	CCWWGG	3 cut(s)	615, 900, 981
Eco147I	AGGCCT	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	1219
Eco47I	GGWCC	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	604, 926
EcoT14I	CCWWGG	3 cut(s)	615, 900, 981
EcoT22I	ATGCAT	1 cut(s)	1473
ErhI	CCWWGG	3 cut(s)	615, 900, 981
FaqI	GGGAC	3 cut(s)	292, 411, 881
FauNDI	CATATG	1 cut(s)	776
Fnu4HI	GCNGC	6 cut(s)	426, 479, 660, 766, 852, 978
FokI	GGATG	3 cut(s)	690, 1008, 1151
Fsp4HI	GCNGC	6 cut(s)	426, 479, 660, 766, 852, 978
FspBI	CTAG	7 cut(s)	152, 170, 176, 251, 879, 974, 1253
GlaI	GCGC	2 cut(s)	1182, 1184
GluI	GCNGC	6 cut(s)	426, 479, 660, 766, 852, 978
HapII	CCGG	2 cut(s)	708, 1187
HgaI	GACGC	1 cut(s)	609
HhaI	GCGC	2 cut(s)	1183, 1185
Hin1I	GRCGYC	1 cut(s)	620
Hin6I	GCGC	2 cut(s)	1181, 1183
HinP1I	GCGC	2 cut(s)	1181, 1183
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	1 cut(s)	1039
HpaI	GTTAAC	1 cut(s)	462
HpaII	CCGG	2 cut(s)	708, 1187
HphI	GGTGA	3 cut(s)	598, 1048, 1060
Hpy166II	GTNNAC	3 cut(s)	462, 891, 1068
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	3 cut(s)	325, 374, 1351
Hpy8I	GTNNAC	3 cut(s)	462, 891, 1068
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	6 cut(s)	51, 341, 562, 697, 1267, 1372
HpyCH4III	ACNGT	8 cut(s)	113, 437, 472, 533, 744, 841, 895, 1036
HpyCH4IV	ACGT	3 cut(s)	558, 666, 1171
HpyCH4V	TGCA	5 cut(s)	478, 1001, 1100, 1416, 1471
HpyF3I	CTNAG	3 cut(s)	68, 244, 1368
HpySE526I	ACGT	3 cut(s)	558, 666, 1171
Hsp92I	GRCGYC	1 cut(s)	620
HspAI	GCGC	2 cut(s)	1181, 1183
KspAI	GTTAAC	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	327, 737
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	5 cut(s)	412, 490, 671, 752, 989
LweI	GCATC	5 cut(s)	1023, 1109, 1173, 1377, 1458
MaeI	CTAG	7 cut(s)	152, 170, 176, 251, 879, 974, 1253
MaeII	ACGT	3 cut(s)	558, 666, 1171
MaeIII	GTNAC	2 cut(s)	511, 1024
MalI	GATC	2 cut(s)	329, 739
MboI	GATC	2 cut(s)	327, 737
MboII	GAAGA	2 cut(s)	74, 1463
MhlI	GDGCHC	4 cut(s)	190, 564, 1201, 1235
MlsI	TGGCCA	1 cut(s)	614
MluCI	AATT	4 cut(s)	35, 286, 1113, 1207
MluNI	TGGCCA	1 cut(s)	614
Mox20I	TGGCCA	1 cut(s)	614
Mph1103I	ATGCAT	1 cut(s)	1473
MscI	TGGCCA	1 cut(s)	614
MseI	TTAA	3 cut(s)	461, 1044, 1425
MslI	CAYNNNNRTG	6 cut(s)	419, 647, 881, 994, 1443, 1476
Msp20I	TGGCCA	1 cut(s)	614
MspI	CCGG	2 cut(s)	708, 1187
MspR9I	CCNGG	4 cut(s)	606, 709, 928, 1187
MvaI	CCWGG	2 cut(s)	606, 928
MvnI	CGCG	1 cut(s)	1183
NciI	CCSGG	2 cut(s)	709, 1187
NcoI	CCATGG	3 cut(s)	615, 900, 981
NdeI	CATATG	1 cut(s)	776
NdeII	GATC	2 cut(s)	327, 737
NheI	GCTAGC	3 cut(s)	175, 973, 1252
NlaIV	GGNNCC	2 cut(s)	187, 1198
NmuCI	GTSAC	2 cut(s)	511, 1024
NsiI	ATGCAT	1 cut(s)	1473
PauI	GCGCGC	1 cut(s)	1181
PceI	AGGCCT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	1039
Pfl23II	CGTACG	1 cut(s)	663
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	6 cut(s)	427, 480, 661, 767, 853, 979
PmaCI	CACGTG	1 cut(s)	559
PmlI	CACGTG	1 cut(s)	559
Ppu21I	YACGTR	3 cut(s)	559, 667, 1172
Psp6I	CCWGG	2 cut(s)	604, 926
PspCI	CACGTG	1 cut(s)	559
PspGI	CCWGG	2 cut(s)	604, 926
PspLI	CGTACG	1 cut(s)	663
PspN4I	GGNNCC	2 cut(s)	187, 1198
PspPI	GGNCC	2 cut(s)	322, 904
PteI	GCGCGC	1 cut(s)	1181
RsaI	GTAC	3 cut(s)	530, 665, 890
RsaNI	GTAC	3 cut(s)	529, 664, 889
RseI	CAYNNNNRTG	6 cut(s)	419, 647, 881, 994, 1443, 1476
SaqAI	TTAA	3 cut(s)	461, 1044, 1425
SatI	GCNGC	6 cut(s)	426, 479, 660, 766, 852, 978
Sau3AI	GATC	2 cut(s)	327, 737
Sau96I	GGNCC	2 cut(s)	322, 904
ScrFI	CCNGG	4 cut(s)	606, 709, 928, 1187
SduI	GDGCHC	4 cut(s)	190, 564, 1201, 1235
SfaNI	GCATC	5 cut(s)	1023, 1109, 1173, 1377, 1458
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	6 cut(s)	419, 647, 881, 994, 1443, 1476
SmlI	CTYRAG	2 cut(s)	1265, 1308
SmoI	CTYRAG	2 cut(s)	1265, 1308
Sse9I	AATT	4 cut(s)	35, 286, 1113, 1207
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	852, 1244, 1322
SspMI	CTAG	7 cut(s)	152, 170, 176, 251, 879, 974, 1253
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	4 cut(s)	604, 707, 926, 1185
StyI	CCWWGG	3 cut(s)	615, 900, 981
TaaI	ACNGT	8 cut(s)	113, 437, 472, 533, 744, 841, 895, 1036
TaiI	ACGT	3 cut(s)	561, 669, 1174
TasI	AATT	4 cut(s)	35, 286, 1113, 1207
TatI	WGTACW	2 cut(s)	528, 888
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	1 cut(s)	1039
Tru1I	TTAA	3 cut(s)	461, 1044, 1425
Tru9I	TTAA	3 cut(s)	461, 1044, 1425
TscAI	CASTG	5 cut(s)	220, 747, 762, 862, 898
TseFI	GTSAC	2 cut(s)	511, 1024
TseI	GCWGC	5 cut(s)	425, 478, 659, 765, 977
Tsp45I	GTSAC	2 cut(s)	511, 1024
TspDTI	ATGAA	3 cut(s)	122, 382, 1464
TspRI	CASTG	5 cut(s)	220, 747, 762, 862, 898
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	3 cut(s)	112, 988, 1078
XspI	CTAG	7 cut(s)	152, 170, 176, 251, 879, 974, 1253
Zsp2I	ATGCAT	1 cut(s)	1473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.