MD10G1045100.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
6050146 .. 6053435
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1045100.v1.1.491

Sequence Viewer

Length: 1500 bp
ATGGCAGATAAGGACCCGGATATTTGCTCCCACAAGTTCCCTTCTGCTTCTCAGGTGTTGGAAGAGCTTAGAGAGCTATGGGGGATGGCGTTTCCCATAACGGCCATGAACTGTTTGGTGTTTATCCGAGCCGCGGTGTCAGTCCTATTCCTTGGCAGGCTTGGAAGTCTAGAGCTAGCCGGTGGCGCACTGTCCCTCGGCTTCACCAACATCACCGGATACTCTGTCCTGATGGGACTAGCATCCGGCCTTGAACCTGTTTGCAGCCAAGCATACGGCAACAAGAACTATGACCTCCTCTCCCTCTCCCTCCAGCGCATGGTTTTAATCCTACTCCTGGCCGTAATCCCCATCAGCCTCCTCTGGATTAATCTCCAGCCCATCATGGTTTTCATGGGACAGGACAAGGCCATCACTGCAATGGCCGCCACCTACTGTTTGTATTCTCTCCCGGACTTGTTGACAAACACGGTTTTGCAGCCTCTGAGGGTTTTTTTGAGGTCGCAGAAAGTGACCAAGCCCATGATGTACTGCTCTATGATAGCTGTGGCGTTTCACGTGCCGCTGAACGTGGTTTTGGTGGTGGTGATGGGACTGGGAGTGCCAGGGGTGGCGGTGGCGTCGGTGCTGACGAACCTGAACATGGCCGTGCTGATGGCGGGGTACGTGTGGTGGAGGTGGAGGAAGATGGAGATGAGATGGACAGCTGGGATTGGATATTTGTGCAGTGGGATTGGGCCGTTGGTGAAGCTGGCGGTACCGAGCTGCTTGGGGATATGTTTGGAGTGGTGGTGGTATGAGATTGTGACTGTCATGGCTGGATATCTGCCGAATCCCACTATGGCGGTGGCCGCCACCGGGATTCTTATTCAGACCACTAGCATGATGTACACTGTCCCCTTGGCCCTTTCTGGCTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGTTGTGGGAAGCCATACAAGGCGAAGTTAGCAGCGATGGTGGCATTGGGATGTGCATTTGTGATCGGCATCATCAACGTGACGTGGACGGTGATTTTAAGAGAGAGGTGGGCAGGCCTCTTCACCAAGGACGAGCTCGTCAAAGCCTTGGTTGCATCAGTCATGCCAATCATGGGGCTTTGTGAGTTAGGCAACTGCCCCCAAACCACTGGCTGTGGCATCCTACGTGGCACAGCACGCCCGGCTGTGGGTGCCCGCATTAATTTGGGGTCGTTCTACTTCGTGGGCACCCCTGTGGCGGTCGGACTTGCCTTCTGGCTCAAGGTAGGGTTTGGCGGGCTCTGGTTTGGGCTTTTATCTGCTCAGGTGGCGTGTGCTGTGTCCATTCTGTATGTTGTGGTGGCGAGGACTGATTGGGAGGCAGAGTCTTTGAAGGCAAAGATGCTGACCGGGATAGAAATGGGTGACTGCAAAAACGAAGGACAAGGGCATGAGAAAGATGACGAAGAAAGCAAAGGGTTACTGATGATGAACGGTGGAGATGGTTTTATTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

500

Amino Acids

53.76

Weight (kDa)

8.26

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 32 - 192 3.7e-36 MatE
MatE PF01554 254 - 415 7.5e-32 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1082
Acc65I GGTACC 1 cut(s) 757
AccB1I GGYRCC 3 cut(s) 757, 1196, 1232
AccB7I CCANNNNNTGG 1 cut(s) 319
AccII CGCG 1 cut(s) 134
AcoI YGGCCR 5 cut(s) 102, 339, 423, 645, 849
AcvI CACGTG 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 620
AfaI GTAC 4 cut(s) 530, 665, 759, 890
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 2 cut(s) 254, 1378
AjiI CACGTC 1 cut(s) 1029
AjnI CCWGG 3 cut(s) 336, 604, 926
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AleI CACNNNNGTG 1 cut(s) 1238
AluBI AGCT 9 cut(s) 67, 76, 175, 545, 707, 751, 765, 943, 1081
AluI AGCT 9 cut(s) 67, 76, 175, 545, 707, 751, 765, 943, 1081
Alw21I GWGCWC 1 cut(s) 1083
AlwNI CAGNNNCTG 1 cut(s) 484
ApeKI GCWGC 4 cut(s) 264, 478, 765, 977
AseI ATTAAT 2 cut(s) 369, 1206
Asp718I GGTACC 1 cut(s) 757
AspLEI GCGC 2 cut(s) 188, 318
AspS9I GGNCC 3 cut(s) 13, 737, 904
AsuC2I CCSGG 5 cut(s) 17, 452, 859, 1187, 1396
AsuHPI GGTGA 7 cut(s) 196, 205, 598, 757, 1048, 1060, 1421
AsuNHI GCTAGC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 2 cut(s) 1201, 1235
BanI GGYRCC 3 cut(s) 757, 1196, 1232
BanII GRGCYC 2 cut(s) 1083, 1287
BbrPI CACGTG 1 cut(s) 559
Bbv12I GWGCWC 1 cut(s) 1083
BbvI GCAGC 4 cut(s) 276, 490, 752, 989
BceAI ACGGC 5 cut(s) 117, 292, 326, 632, 724
BciT130I CCWGG 3 cut(s) 338, 606, 928
BciVI GTATCC 1 cut(s) 212
BcnI CCSGG 5 cut(s) 17, 452, 859, 1187, 1396
BfaI CTAG 4 cut(s) 170, 176, 239, 879
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 8 cut(s) 132, 265, 426, 479, 563, 766, 852, 978
BlsI GCNGC 8 cut(s) 133, 266, 427, 480, 564, 767, 853, 979
Bme1390I CCNGG 8 cut(s) 17, 338, 452, 606, 859, 928, 1187, 1396
Bme18I GGWCC 1 cut(s) 13
BmgBI CACGTC 1 cut(s) 1029
BmgT120I GGNCC 3 cut(s) 13, 737, 904
BmiI GGNNCC 4 cut(s) 15, 759, 1198, 1234
BmrFI CCNGG 8 cut(s) 17, 338, 452, 606, 859, 928, 1187, 1396
BmrI ACTGGG 1 cut(s) 605
BmsI GCATC 5 cut(s) 251, 1023, 1109, 1173, 1377
BmtI GCTAGC 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 605
BpmI CTGGAG 2 cut(s) 296, 359
Bpu10I CCTNAGC 1 cut(s) 1308
BpuEI CTTGAG 1 cut(s) 1250
BpuMI CCSGG 5 cut(s) 17, 452, 859, 1187, 1396
BsaAI YACGTR 3 cut(s) 559, 667, 1172
BsaBI GATNNNNATC 1 cut(s) 1013
BsaHI GRCGYC 1 cut(s) 620
BsaJI CCNNGG 8 cut(s) 132, 151, 196, 605, 900, 927, 1071, 1092
BsaWI WCCGGW 1 cut(s) 215
BsaXI ACNNNNNCTCC 6 cut(s) 284, 314, 776, 806, 1355, 1385
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 600, 1159
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 1013
BseBI CCWGG 3 cut(s) 338, 606, 928
BseDI CCNNGG 8 cut(s) 132, 151, 196, 605, 900, 927, 1071, 1092
BseGI GGATG 4 cut(s) 90, 242, 1001, 1164
BseJI GATNNNNATC 1 cut(s) 1013
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 3 cut(s) 65, 476, 1322
BseNI ACTGG 2 cut(s) 600, 1159
BseRI GAGGAG 2 cut(s) 287, 350
BseSI GKGCMC 2 cut(s) 1201, 1235
BseXI GCAGC 4 cut(s) 276, 490, 752, 989
BseYI CCCAGC 1 cut(s) 707
BsgI GTGCAG 1 cut(s) 745
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 1248
BshNI GGYRCC 3 cut(s) 757, 1196, 1232
BsiEI CGRYCG 1 cut(s) 1248
BsiHKAI GWGCWC 1 cut(s) 1083
BsiSI CCGG 8 cut(s) 17, 180, 216, 246, 452, 858, 1187, 1395
BslFI GGGAC 5 cut(s) 178, 249, 411, 606, 881
BsmFI GGGAC 5 cut(s) 178, 249, 411, 606, 881
Bsp1286I GDGCHC 4 cut(s) 1083, 1201, 1235, 1287
Bsp1407I TGTACA 1 cut(s) 888
Bsp143I GATC 1 cut(s) 1008
BspCNI CTCAG 3 cut(s) 64, 477, 1321
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 4 cut(s) 15, 759, 1198, 1234
BspOI GCTAGC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 57
BspT107I GGYRCC 3 cut(s) 757, 1196, 1232
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 888
BsrI ACTGG 2 cut(s) 600, 1159
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 8 cut(s) 132, 151, 196, 605, 900, 927, 1071, 1092
BssMI GATC 1 cut(s) 1008
BssNI GRCGYC 1 cut(s) 620
BssT1I CCWWGG 4 cut(s) 151, 900, 1071, 1092
Bst2UI CCWGG 3 cut(s) 338, 606, 928
Bst4CI ACNGT 8 cut(s) 113, 192, 437, 472, 811, 895, 1036, 1481
Bst6I CTCTTC 2 cut(s) 57, 1070
BstACI GRCGYC 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 888
BstBAI YACGTR 3 cut(s) 559, 667, 1172
BstC8I GCNNGC 7 cut(s) 158, 177, 753, 1060, 1183, 1201, 1283
BstDEI CTNAG 4 cut(s) 51, 68, 485, 1308
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 4 cut(s) 90, 242, 1001, 1164
BstFNI CGCG 1 cut(s) 134
BstHHI GCGC 2 cut(s) 188, 318
BstKTI GATC 1 cut(s) 1011
BstMBI GATC 1 cut(s) 1008
BstMCI CGRYCG 1 cut(s) 1248
BstNI CCWGG 3 cut(s) 338, 606, 928
BstSCI CCNGG 8 cut(s) 15, 336, 450, 604, 857, 926, 1185, 1394
BstSLI GKGCMC 2 cut(s) 1201, 1235
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 4 cut(s) 276, 490, 752, 989
BstXI CCANNNNNNTGG 1 cut(s) 1154
BsuI GTATCC 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 995
BtrI CACGTC 1 cut(s) 1029
BtsCI GGATG 4 cut(s) 90, 242, 1001, 1164
BtsI GCAGTG 2 cut(s) 414, 733
BtsIMutI CAGTG 5 cut(s) 188, 414, 733, 891, 1152
Cac8I GCNNGC 7 cut(s) 158, 177, 753, 1060, 1183, 1201, 1283
CaiI CAGNNNCTG 1 cut(s) 484
CfoI GCGC 2 cut(s) 188, 318
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 13, 737, 904
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 1 cut(s) 609
Csp6I GTAC 4 cut(s) 529, 664, 758, 889
CviQI GTAC 4 cut(s) 529, 664, 758, 889
DdeI CTNAG 4 cut(s) 51, 68, 485, 1308
DpnI GATC 1 cut(s) 1010
DpnII GATC 1 cut(s) 1008
DrdI GACNNNNNNGTC 1 cut(s) 1082
DseDI GACNNNNNNGTC 1 cut(s) 1082
EaeI YGGCCR 5 cut(s) 102, 339, 423, 645, 849
Eam1104I CTCTTC 2 cut(s) 57, 1070
EarI CTCTTC 2 cut(s) 57, 1070
Ecl136II GAGCTC 1 cut(s) 1081
Eco130I CCWWGG 4 cut(s) 151, 900, 1071, 1092
Eco147I AGGCCT 1 cut(s) 1062
Eco24I GRGCYC 2 cut(s) 1083, 1287
Eco32I GATATC 1 cut(s) 824
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 1081
Eco72I CACGTG 1 cut(s) 559
EcoICRI GAGCTC 1 cut(s) 1081
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 3 cut(s) 336, 604, 926
EcoRV GATATC 1 cut(s) 824
EcoT14I CCWWGG 4 cut(s) 151, 900, 1071, 1092
EcoT38I GRGCYC 2 cut(s) 1083, 1287
ErhI CCWWGG 4 cut(s) 151, 900, 1071, 1092
FaqI GGGAC 5 cut(s) 178, 249, 411, 606, 881
FauI CCCGC 3 cut(s) 652, 1208, 1274
Fnu4HI GCNGC 8 cut(s) 132, 265, 426, 479, 563, 766, 852, 978
FokI GGATG 4 cut(s) 97, 229, 1008, 1151
FriOI GRGCYC 2 cut(s) 1083, 1287
Fsp4HI GCNGC 8 cut(s) 132, 265, 426, 479, 563, 766, 852, 978
FspBI CTAG 4 cut(s) 170, 176, 239, 879
GlaI GCGC 2 cut(s) 187, 317
GluI GCNGC 8 cut(s) 132, 265, 426, 479, 563, 766, 852, 978
GsaI CCCAGC 1 cut(s) 711
GsuI CTGGAG 2 cut(s) 296, 359
HapII CCGG 8 cut(s) 17, 180, 216, 246, 452, 858, 1187, 1395
HgaI GACGC 1 cut(s) 609
HhaI GCGC 2 cut(s) 188, 318
Hin1I GRCGYC 1 cut(s) 620
Hin6I GCGC 2 cut(s) 186, 316
HinP1I GCGC 2 cut(s) 186, 316
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 3 cut(s) 832, 862, 1370
HpaII CCGG 8 cut(s) 17, 180, 216, 246, 452, 858, 1187, 1395
HphI GGTGA 7 cut(s) 196, 205, 598, 757, 1048, 1060, 1421
Hpy166II GTNNAC 3 cut(s) 462, 891, 1032
Hpy188I TCNGA 4 cut(s) 128, 486, 873, 1250
Hpy188III TCNNGA 3 cut(s) 170, 229, 364
Hpy8I GTNNAC 3 cut(s) 462, 891, 1032
Hpy99I CGWCG 1 cut(s) 625
HpyAV CCTTC 4 cut(s) 51, 1267, 1372, 1418
HpyCH4III ACNGT 8 cut(s) 113, 192, 437, 472, 811, 895, 1036, 1481
HpyCH4IV ACGT 6 cut(s) 558, 570, 666, 1023, 1028, 1171
HpyCH4V TGCA 7 cut(s) 264, 419, 478, 726, 1001, 1100, 1416
HpyF3I CTNAG 4 cut(s) 51, 68, 485, 1308
HpySE526I ACGT 6 cut(s) 558, 570, 666, 1023, 1028, 1171
Hsp92I GRCGYC 1 cut(s) 620
HspAI GCGC 2 cut(s) 186, 316
KpnI GGTACC 1 cut(s) 761
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 1 cut(s) 1008
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 4 cut(s) 276, 490, 752, 989
LweI GCATC 5 cut(s) 251, 1023, 1109, 1173, 1377
MaeI CTAG 4 cut(s) 170, 176, 239, 879
MaeII ACGT 6 cut(s) 558, 570, 666, 1023, 1028, 1171
MaeIII GTNAC 5 cut(s) 511, 805, 1024, 1409, 1464
MalI GATC 1 cut(s) 1010
MboI GATC 1 cut(s) 1008
MboII GAAGA 4 cut(s) 74, 697, 1057, 1463
MhlI GDGCHC 4 cut(s) 1083, 1201, 1235, 1287
MluCI AATT 1 cut(s) 1207
MlyI GAGTC 1 cut(s) 1379
MmeI TCCRAC 2 cut(s) 39, 1228
MseI TTAA 4 cut(s) 326, 369, 1043, 1206
MslI CAYNNNNRTG 6 cut(s) 419, 647, 881, 994, 1022, 1238
MspA1I CMGCKG 3 cut(s) 134, 565, 707
MspI CCGG 8 cut(s) 17, 180, 216, 246, 452, 858, 1187, 1395
MspR9I CCNGG 8 cut(s) 17, 338, 452, 606, 859, 928, 1187, 1396
MvaI CCWGG 3 cut(s) 338, 606, 928
MvnI CGCG 1 cut(s) 134
NciI CCSGG 5 cut(s) 17, 452, 859, 1187, 1396
NdeII GATC 1 cut(s) 1008
NheI GCTAGC 1 cut(s) 175
NlaIV GGNNCC 4 cut(s) 15, 759, 1198, 1234
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 4 cut(s) 511, 805, 1024, 1409
OliI CACNNNNGTG 1 cut(s) 1238
PceI AGGCCT 1 cut(s) 1062
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 629
PfeI GAWTC 2 cut(s) 832, 862
PflMI CCANNNNNTGG 1 cut(s) 319
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 8 cut(s) 133, 266, 427, 480, 564, 767, 853, 979
PleI GAGTC 1 cut(s) 1378
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 1 cut(s) 1378
Ppu21I YACGTR 3 cut(s) 559, 667, 1172
PpuMI RGGWCCY 1 cut(s) 13
PshBI ATTAAT 2 cut(s) 369, 1206
Psp124BI GAGCTC 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 336, 604, 926
PspCI CACGTG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 3 cut(s) 336, 604, 926
PspN4I GGNNCC 4 cut(s) 15, 759, 1198, 1234
PspPI GGNCC 3 cut(s) 13, 737, 904
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 4 cut(s) 530, 665, 759, 890
RsaNI GTAC 4 cut(s) 529, 664, 758, 889
RseI CAYNNNNRTG 6 cut(s) 419, 647, 881, 994, 1022, 1238
SacI GAGCTC 1 cut(s) 1083
SacII CCGCGG 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 4 cut(s) 326, 369, 1043, 1206
SatI GCNGC 8 cut(s) 132, 265, 426, 479, 563, 766, 852, 978
Sau3AI GATC 1 cut(s) 1008
Sau96I GGNCC 3 cut(s) 13, 737, 904
SchI GAGTC 1 cut(s) 1379
ScrFI CCNGG 8 cut(s) 17, 338, 452, 606, 859, 928, 1187, 1396
SduI GDGCHC 4 cut(s) 1083, 1201, 1235, 1287
SfaNI GCATC 5 cut(s) 251, 1023, 1109, 1173, 1377
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 6 cut(s) 419, 647, 881, 994, 1022, 1238
SmlI CTYRAG 1 cut(s) 1265
SmoI CTYRAG 1 cut(s) 1265
Sse9I AATT 1 cut(s) 1207
SseBI AGGCCT 1 cut(s) 1062
SspMI CTAG 4 cut(s) 170, 176, 239, 879
SstI GAGCTC 1 cut(s) 1083
StuI AGGCCT 1 cut(s) 1062
StyD4I CCNGG 8 cut(s) 15, 336, 450, 604, 857, 926, 1185, 1394
StyI CCWWGG 4 cut(s) 151, 900, 1071, 1092
TaaI ACNGT 8 cut(s) 113, 192, 437, 472, 811, 895, 1036, 1481
TaiI ACGT 6 cut(s) 561, 573, 669, 1026, 1031, 1174
TasI AATT 1 cut(s) 1207
TatI WGTACW 2 cut(s) 528, 888
TauI GCSGC 4 cut(s) 134, 428, 565, 854
TfiI GAWTC 2 cut(s) 832, 862
Tru1I TTAA 4 cut(s) 326, 369, 1043, 1206
Tru9I TTAA 4 cut(s) 326, 369, 1043, 1206
TscAI CASTG 5 cut(s) 195, 421, 733, 898, 1159
TseFI GTSAC 4 cut(s) 511, 805, 1024, 1409
TseI GCWGC 4 cut(s) 264, 478, 765, 977
Tsp45I GTSAC 4 cut(s) 511, 805, 1024, 1409
TspDTI ATGAA 3 cut(s) 122, 382, 1490
TspRI CASTG 5 cut(s) 195, 421, 733, 898, 1159
Van91I CCANNNNNTGG 1 cut(s) 319
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 2 cut(s) 369, 1206
XbaI TCTAGA 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 3 cut(s) 112, 418, 844
XspI CTAG 4 cut(s) 170, 176, 239, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.