Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007290

Physical Location & Seq

Genomic Coordinates Reverse (-)

9235645 .. 9238809

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0069300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCACTTGCACTTGCATCCCAATAGAAAGGAAATGGCTAGCGTTAAGGAGGAGAGAACAACAACAGGATGGGCTGCAAGAGATTCATCTGGGATTCTCTCACCCTACACCTACACTCTTAGAGACACAGGCCCAGAAGATGTTTACATCAAAGTCCTGTGCTGTGGAATTTGCCACACTGATATTCTCCAGGCTAGAAATCAACTTGGCATGTCACACTATCCAATGGTTCCTGGGCATGAAATAGTCGGTGAGGTGGTGGAAGTGGGATCAGATGTGACCAAGCTCAAAGTTGGAGACGTAGTCGGAGTTGGGCTCGTTGTAGGTTGCTGCAGAGACTGCAATCCATGCAAAACAGACAACGAGCAATACTGCAACAAAAGAATCTGGACATATAGCGATGTTTACTCCGATGGCAAGCCCACCCAAGGCGGTTTTGCTGGTGCCATAGTCGTTAATGAAAAGTTTGCAATAAAGATACCGGATGGCATGGCCCCGCAGCAGGTGGCGCCACTACTTTGCGCCGCGGTGACTGTGTATAGCCCTCTTCGGAAGTTTGGTCTGAATGCTAGTGGACTAAGAGGAGGAATACTGGGACTTGGAGGTGTGGGACACATGGGGGTGAAGATAGCGAAGGCCATGGGACACCACGTCACTGTGATAAGCTCTTCTGATAAGAAGCGACAGGAAGCTATGGTGGATATTGGGGCTCACGAGTACTTGATTAGCTCTGATGCCACAAAAATGCAAGAAGCTGCTGACTCTCTAGATTACATTATTGATACAGTGCCTGTGTTCCATCCTCTTGAGCCTTACCTTCCTTTGCTGAAATTCGATGGGAAATTGATCTTGCTGGGTGCTATTGAGACCCCTCTACAATTCCTCTCCCCCATGATCTTGCTTGGAAAACAATCACGGGGAGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0006810 GO:0006855 GO:0008150 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

309

Amino Acids

33.38

Weight (kDa)

6.59

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	44 - 162	5.9e-26	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	202 - 301	2.4e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71870
fragaria_vesca	FvH4_2g12380 FvH4_2g12380
malus_domestica	MD05G1039600.v1.1 MD10G1045100.v1.1
prunus_persica	Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1 Prupe.8G052000_v2.0.a1
pyrus_communis	pycom05g03230
rosa_chinensis	RchiOBHm_Chr6g0272411
rosa_laevigata	RLG00000013675
rosa_multiflora	Rmu_co8064498.1_g000001 Rmu_sc0000104.1_g000024 Rmu_sc0004003.1_g000005
rosa_roxburghii	Rroxscaffold_7G00196270
rosa_rugosa	Rorug06G0069200 Rorug06G0069300 Rorug06G0069300 Rorug06G0069400
rosa_samantha	Rh6AG185000 Rh6BG188300 Rh6CG186200 Rh6DG178000
rosa_wichuraiana	Rw6G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AccB1I	GGYRCC	2 cut(s)	443, 508
AccII	CGCG	1 cut(s)	527
AciI	CCGC	4 cut(s)	432, 497, 525, 527
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	168, 830
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	2 cut(s)	428, 502
AhdI	GACNNNNNGTC	1 cut(s)	650
AjiI	CACGTC	1 cut(s)	652
AjnI	CCWGG	2 cut(s)	189, 232
AluBI	AGCT	6 cut(s)	286, 666, 692, 729, 755, 923
AluI	AGCT	6 cut(s)	286, 666, 692, 729, 755, 923
Alw26I	GTCTC	4 cut(s)	117, 291, 330, 860
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	2 cut(s)	339, 791
AoxI	GGCC	3 cut(s)	130, 492, 636
ApeKI	GCWGC	4 cut(s)	74, 330, 499, 755
ApoI	RAATTY	2 cut(s)	168, 830
AspLEI	GCGC	2 cut(s)	511, 524
AspS9I	GGNCC	2 cut(s)	131, 493
AsuHPI	GGTGA	4 cut(s)	93, 263, 541, 634
AsuNHI	GCTAGC	1 cut(s)	38
BanI	GGYRCC	2 cut(s)	443, 508
BanII	GRGCYC	2 cut(s)	318, 712
BauI	CACGAG	1 cut(s)	713
BbvI	GCAGC	4 cut(s)	61, 317, 511, 742
BccI	CCATC	5 cut(s)	63, 407, 479, 807, 830
BciT130I	CCWGG	2 cut(s)	191, 234
BcoDI	GTCTC	4 cut(s)	117, 291, 330, 860
BfaI	CTAG	4 cut(s)	39, 195, 570, 767
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	5 cut(s)	75, 331, 500, 525, 756
BlsI	GCNGC	5 cut(s)	76, 332, 501, 526, 757
BmcAI	AGTACT	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	191, 234
BmeRI	GACNNNNNGTC	1 cut(s)	650
BmgBI	CACGTC	1 cut(s)	652
BmgT120I	GGNCC	2 cut(s)	131, 493
BmiI	GGNNCC	4 cut(s)	231, 445, 495, 510
BmrFI	CCNGG	2 cut(s)	191, 234
BmrI	ACTGGG	1 cut(s)	602
BmsI	GCATC	2 cut(s)	25, 724
BmtI	GCTAGC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	602
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpmI	CTGGAG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	827
BsaHI	GRCGYC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	860
BsaJI	CCNNGG	4 cut(s)	233, 427, 525, 639
BsaWI	WCCGGW	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	428, 502
Bse1I	ACTGG	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	191, 234
BseDI	CCNNGG	4 cut(s)	233, 427, 525, 639
BseGI	GGATG	4 cut(s)	16, 74, 490, 799
BseLI	CCNNNNNNNGG	2 cut(s)	428, 502
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	2 cut(s)	65, 597
BseXI	GCAGC	4 cut(s)	61, 317, 511, 742
BseYI	CCCAGC	1 cut(s)	853
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	3 cut(s)	132, 494, 638
BshNI	GGYRCC	2 cut(s)	443, 508
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	3 cut(s)	609, 624, 657
BslI	CCNNNNNNNGG	2 cut(s)	428, 502
BsmAI	GTCTC	4 cut(s)	117, 291, 330, 860
BsmBI	CGTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	609, 624, 657
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	3 cut(s)	132, 494, 638
Bso31I	GGTCTC	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	318, 712
Bsp143I	GATC	3 cut(s)	269, 846, 894
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	4 cut(s)	432, 497, 525, 527
BspANI	GGCC	3 cut(s)	132, 494, 638
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	4 cut(s)	231, 445, 495, 510
BspMAI	CTGCAG	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	673
BspT107I	GGYRCC	2 cut(s)	443, 508
BspTNI	GGTCTC	1 cut(s)	860
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	4 cut(s)	233, 427, 525, 639
BssMI	GATC	3 cut(s)	269, 846, 894
BssNI	GRCGYC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	713
BssT1I	CCWWGG	2 cut(s)	427, 639
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	2 cut(s)	191, 234
Bst4CI	ACNGT	3 cut(s)	535, 658, 787
Bst6I	CTCTTC	2 cut(s)	552, 673
BstACI	GRCGYC	1 cut(s)	509
BstAPI	GCANNNNNTGC	2 cut(s)	339, 348
BstC8I	GCNNGC	2 cut(s)	40, 419
BstDEI	CTNAG	2 cut(s)	119, 578
BstDSI	CCRYGG	2 cut(s)	525, 639
BstF5I	GGATG	4 cut(s)	16, 74, 490, 799
BstFNI	CGCG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	2 cut(s)	511, 524
BstKTI	GATC	3 cut(s)	272, 849, 897
BstMAI	GTCTC	4 cut(s)	117, 291, 330, 860
BstMBI	GATC	3 cut(s)	269, 846, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	339, 348, 508
BstNI	CCWGG	2 cut(s)	191, 234
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	2 cut(s)	189, 232
BstSFI	CTRYAG	1 cut(s)	331
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	4 cut(s)	61, 317, 511, 742
BsuRI	GGCC	3 cut(s)	132, 494, 638
BtgI	CCRYGG	2 cut(s)	525, 639
BtgZI	GCGATG	1 cut(s)	414
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	4 cut(s)	16, 74, 490, 799
BtsIMutI	CAGTG	3 cut(s)	177, 654, 792
BveI	ACCTGC	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	40, 419
CaiI	CAGNNNCTG	2 cut(s)	339, 791
CfoI	GCGC	2 cut(s)	511, 524
Cfr13I	GGNCC	2 cut(s)	131, 493
Cfr42I	CCGCGG	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	718
CviAII	CATG	7 cut(s)	211, 239, 348, 490, 616, 640, 892
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	2 cut(s)	119, 578
DinI	GGCGCC	1 cut(s)	510
DpnI	GATC	3 cut(s)	271, 848, 896
DpnII	GATC	3 cut(s)	269, 846, 894
DriI	GACNNNNNGTC	1 cut(s)	650
Eam1104I	CTCTTC	2 cut(s)	552, 673
Eam1105I	GACNNNNNGTC	1 cut(s)	650
EarI	CTCTTC	2 cut(s)	552, 673
Eco130I	CCWWGG	2 cut(s)	427, 639
Eco24I	GRGCYC	2 cut(s)	318, 712
Eco31I	GGTCTC	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	189, 232
EcoT14I	CCWWGG	2 cut(s)	427, 639
EcoT38I	GRGCYC	2 cut(s)	318, 712
EgeI	GGCGCC	1 cut(s)	510
EheI	GGCGCC	1 cut(s)	510
ErhI	CCWWGG	2 cut(s)	427, 639
Esp3I	CGTCTC	1 cut(s)	291
FaeI	CATG	7 cut(s)	214, 242, 351, 493, 619, 643, 895
FaqI	GGGAC	3 cut(s)	609, 624, 657
FatI	CATG	7 cut(s)	210, 238, 347, 489, 615, 639, 891
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	75, 331, 500, 525, 756
FokI	GGATG	4 cut(s)	3, 81, 497, 786
FriOI	GRGCYC	2 cut(s)	318, 712
Fsp4HI	GCNGC	5 cut(s)	75, 331, 500, 525, 756
FspBI	CTAG	4 cut(s)	39, 195, 570, 767
GlaI	GCGC	2 cut(s)	510, 523
GluI	GCNGC	5 cut(s)	75, 331, 500, 525, 756
GsaI	CCCAGC	1 cut(s)	857
GsuI	CTGGAG	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	3 cut(s)	132, 494, 638
HapII	CCGG	1 cut(s)	482
HhaI	GCGC	2 cut(s)	511, 524
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	7 cut(s)	214, 242, 351, 493, 619, 643, 895
Hin6I	GCGC	2 cut(s)	509, 522
HinP1I	GCGC	2 cut(s)	509, 522
HinfI	GANTC	4 cut(s)	83, 94, 384, 761
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	4 cut(s)	93, 263, 541, 634
Hpy166II	GTNNAC	3 cut(s)	145, 406, 575
Hpy188I	TCNGA	7 cut(s)	274, 308, 412, 552, 564, 673, 733
Hpy188III	TCNNGA	4 cut(s)	388, 713, 767, 806
Hpy8I	GTNNAC	3 cut(s)	145, 406, 575
HpyAV	CCTTC	2 cut(s)	628, 827
HpyCH4III	ACNGT	3 cut(s)	535, 658, 787
HpyCH4IV	ACGT	2 cut(s)	300, 651
HpyF10VI	GCNNNNNNNGC	3 cut(s)	339, 348, 508
HpyF3I	CTNAG	2 cut(s)	119, 578
HpySE526I	ACGT	2 cut(s)	300, 651
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	7 cut(s)	214, 242, 351, 493, 619, 643, 895
HspAI	GCGC	2 cut(s)	509, 522
KasI	GGCGCC	1 cut(s)	508
KspI	CCGCGG	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	269, 846, 894
LguI	GCTCTTC	1 cut(s)	673
LmnI	GCTCC	1 cut(s)	920
Lsp1109I	GCAGC	4 cut(s)	61, 317, 511, 742
LweI	GCATC	2 cut(s)	25, 724
MaeI	CTAG	4 cut(s)	39, 195, 570, 767
MaeII	ACGT	2 cut(s)	300, 651
MaeIII	GTNAC	4 cut(s)	213, 277, 529, 652
MalI	GATC	3 cut(s)	271, 848, 896
MboI	GATC	3 cut(s)	269, 846, 894
MboII	GAAGA	4 cut(s)	149, 539, 637, 660
MhlI	GDGCHC	2 cut(s)	318, 712
MluCI	AATT	4 cut(s)	168, 830, 842, 878
Mly113I	GGCGCC	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	2 cut(s)	274, 286
MnlI	CCTC	9 cut(s)	43, 247, 555, 575, 578, 596, 813, 882, 893
MseI	TTAA	2 cut(s)	45, 456
MslI	CAYNNNNRTG	2 cut(s)	620, 743
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	191, 234
Mva1269I	GAATGC	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	191, 234
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	3 cut(s)	339, 348, 508
NarI	GGCGCC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	3 cut(s)	269, 846, 894
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	7 cut(s)	214, 242, 351, 493, 619, 643, 895
NlaIV	GGNNCC	4 cut(s)	231, 445, 495, 510
NmuCI	GTSAC	4 cut(s)	213, 277, 529, 652
NspI	RCATGY	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	673
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	83, 94, 384
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	76, 332, 501, 526, 757
PleI	GAGTC	1 cut(s)	755
PluTI	GGCGCC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	755
Psp6I	CCWGG	2 cut(s)	189, 232
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	2 cut(s)	189, 232
PspN4I	GGNNCC	4 cut(s)	231, 445, 495, 510
PspPI	GGNCC	2 cut(s)	131, 493
PstI	CTGCAG	1 cut(s)	335
PstNI	CAGNNNCTG	2 cut(s)	339, 791
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
RseI	CAYNNNNRTG	2 cut(s)	620, 743
SacII	CCGCGG	1 cut(s)	528
SapI	GCTCTTC	1 cut(s)	673
SaqAI	TTAA	2 cut(s)	45, 456
SatI	GCNGC	5 cut(s)	75, 331, 500, 525, 756
Sau3AI	GATC	3 cut(s)	269, 846, 894
Sau96I	GGNCC	2 cut(s)	131, 493
ScaI	AGTACT	1 cut(s)	719
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	2 cut(s)	191, 234
SduI	GDGCHC	2 cut(s)	318, 712
SfaNI	GCATC	2 cut(s)	25, 724
SfcI	CTRYAG	1 cut(s)	331
SfoI	GGCGCC	1 cut(s)	510
Sfr303I	CCGCGG	1 cut(s)	528
SgrBI	CCGCGG	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	620, 743
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	4 cut(s)	168, 830, 842, 878
SsiI	CCGC	4 cut(s)	432, 497, 525, 527
SspDI	GGCGCC	1 cut(s)	508
SspMI	CTAG	4 cut(s)	39, 195, 570, 767
StyD4I	CCNGG	2 cut(s)	189, 232
StyI	CCWWGG	2 cut(s)	427, 639
TaaI	ACNGT	3 cut(s)	535, 658, 787
TaiI	ACGT	2 cut(s)	303, 654
TaqI	TCGA	1 cut(s)	834
TasI	AATT	4 cut(s)	168, 830, 842, 878
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	83, 94, 384
Tru1I	TTAA	2 cut(s)	45, 456
Tru9I	TTAA	2 cut(s)	45, 456
TscAI	CASTG	3 cut(s)	184, 661, 792
TseFI	GTSAC	4 cut(s)	213, 277, 529, 652
TseI	GCWGC	4 cut(s)	74, 330, 499, 755
Tsp45I	GTSAC	4 cut(s)	213, 277, 529, 652
TspDTI	ATGAA	4 cut(s)	75, 255, 474, 915
TspRI	CASTG	3 cut(s)	184, 661, 792
Tth111I	GACNNNGTC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	168, 830
XbaI	TCTAGA	1 cut(s)	766
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	4 cut(s)	39, 195, 570, 767
ZrmI	AGTACT	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.