Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Forward (+)

13278973 .. 13289290

Gene Structure 10318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1068800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATCGGTGTTATTGAAATCTACTCCCTCATTGGGTCCGCCATGGCCGGAAAAACTTCCGACTGGGTCGGCCGCCGCTACACCATAGTCATCTCCGGAGCGATTTTCTTCATCGGAGCGATTCTCATGGGGTTCTCCGCCAACTACACCTTCCTCATGTGCGGCCGCTTTGTCGCCGGCATCGGAGTCGGCTACGCCCTCACGATTGCTCCCGTCTACAGCGCCGAGGTCTCTCCGACGTCGTCTCGCGGCTTCCTCACGTCTTTCCCAGAGGTTAATCATGGTATTTCCATGTGCTGTTACAAATATATACCGGTAAAGTGGTTTAATAACTTAAATAGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

116

Amino Acids

12.53

Weight (kDa)

9.02

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	5 - 92	2.3e-22	Sugar (and other) transporter
MFS_1	PF07690	9 - 89	2.3e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	242
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	249
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	7 cut(s)	39, 73, 76, 138, 162, 166, 249
AcoI	YGGCCR	3 cut(s)	45, 70, 163
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgeI	ACCGGT	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
Alw26I	GTCTC	2 cut(s)	235, 249
Aor13HI	TCCGGA	1 cut(s)	95
AoxI	GGCC	3 cut(s)	45, 70, 163
AsiGI	ACCGGT	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	36
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcoDI	GTCTC	2 cut(s)	235, 249
BfmI	CTRYAG	1 cut(s)	217
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	5 cut(s)	73, 76, 163, 166, 250
BlsI	GCNGC	5 cut(s)	74, 77, 164, 167, 251
Bme18I	GGWCC	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	73
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	42, 225
BsaWI	WCCGGW	2 cut(s)	95, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	2 cut(s)	176, 313
Bse1I	ACTGG	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	42, 225
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	68
BseX3I	CGGCCG	2 cut(s)	70, 163
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	2 cut(s)	73, 166
BshFI	GGCC	3 cut(s)	47, 72, 165
BshTI	ACCGGT	1 cut(s)	313
BsiEI	CGRYCG	2 cut(s)	73, 166
BsiSI	CCGG	4 cut(s)	48, 96, 177, 314
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	235, 249
BsmBI	CGTCTC	1 cut(s)	249
BsnI	GGCC	3 cut(s)	47, 72, 165
Bso31I	GGTCTC	1 cut(s)	235
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	7 cut(s)	39, 73, 76, 138, 162, 166, 249
BspANI	GGCC	3 cut(s)	47, 72, 165
BspEI	TCCGGA	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	176, 313
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	2 cut(s)	176, 313
BssECI	CCNNGG	2 cut(s)	42, 225
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	235, 249
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	2 cut(s)	73, 166
BstSFI	CTRYAG	1 cut(s)	217
BstUI	CGCG	1 cut(s)	249
BstZI	CGGCCG	2 cut(s)	70, 163
BsuRI	GGCC	3 cut(s)	47, 72, 165
BtgI	CCRYGG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	178
CciNI	GCGGCCGC	1 cut(s)	163
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	2 cut(s)	176, 313
Cfr13I	GGNCC	1 cut(s)	36
CspAI	ACCGGT	1 cut(s)	313
CviAII	CATG	5 cut(s)	43, 127, 157, 281, 292
CviJI	RGCY	5 cut(s)	47, 72, 165, 192, 252
CviKI_1	RGCY	5 cut(s)	47, 72, 165, 192, 252
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	3 cut(s)	45, 70, 163
EagI	CGGCCG	2 cut(s)	70, 163
EciI	GGCGGA	2 cut(s)	28, 127
EclXI	CGGCCG	2 cut(s)	70, 163
Eco130I	CCWWGG	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	36
Eco52I	CGGCCG	2 cut(s)	70, 163
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	5 cut(s)	46, 130, 160, 284, 295
FaiI	YATR	8 cut(s)	44, 86, 128, 158, 282, 293, 309, 311
FatI	CATG	5 cut(s)	42, 126, 156, 280, 291
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	5 cut(s)	73, 76, 163, 166, 250
Fsp4HI	GCNGC	5 cut(s)	73, 76, 163, 166, 250
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	73, 76, 163, 166, 250
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	47, 72, 165
HapII	CCGG	4 cut(s)	48, 96, 177, 314
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	5 cut(s)	46, 130, 160, 284, 295
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	2 cut(s)	121, 186
HpaII	CCGG	4 cut(s)	48, 96, 177, 314
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	4 cut(s)	61, 116, 185, 237
Hpy188III	TCNNGA	2 cut(s)	96, 202
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	2 cut(s)	241, 244
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	2 cut(s)	239, 260
HpySE526I	ACGT	2 cut(s)	239, 260
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	5 cut(s)	46, 130, 160, 284, 295
HspAI	GCGC	1 cut(s)	222
Kpn2I	TCCGGA	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	3 cut(s)	98, 116, 214
LpnPI	CCDG	6 cut(s)	49, 61, 109, 190, 282, 327
LweI	GCATC	1 cut(s)	189
MaeII	ACGT	2 cut(s)	239, 260
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	2 cut(s)	84, 260
MnlI	CCTC	6 cut(s)	38, 164, 209, 220, 265, 266
MroI	TCCGGA	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	176
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	4 cut(s)	276, 327, 335, 346
MspI	CCGG	4 cut(s)	48, 96, 177, 314
MvnI	CGCG	1 cut(s)	249
NaeI	GCCGGC	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	3
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	5 cut(s)	46, 130, 160, 284, 295
NlaIV	GGNNCC	1 cut(s)	37
NmeAIII	GCCGAG	1 cut(s)	250
NotI	GCGGCCGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	121
PflFI	GACNNNGTC	2 cut(s)	65, 241
PinAI	ACCGGT	1 cut(s)	313
PkrI	GCNGC	5 cut(s)	74, 77, 164, 167, 251
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
PsyI	GACNNNGTC	2 cut(s)	65, 241
SaqAI	TTAA	4 cut(s)	276, 327, 335, 346
SatI	GCNGC	5 cut(s)	73, 76, 163, 166, 250
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	195
SetI	ASST	6 cut(s)	152, 231, 242, 263, 276, 344
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	217
SinI	GGWCC	1 cut(s)	36
SsiI	CCGC	7 cut(s)	39, 73, 76, 138, 162, 166, 249
StyI	CCWWGG	1 cut(s)	42
TaiI	ACGT	2 cut(s)	242, 263
TauI	GCSGC	5 cut(s)	75, 78, 165, 168, 252
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	4 cut(s)	276, 327, 335, 346
Tru9I	TTAA	4 cut(s)	276, 327, 335, 346
TspDTI	ATGAA	1 cut(s)	100
Tth111I	GACNNNGTC	2 cut(s)	65, 241
VpaK11BI	GGWCC	1 cut(s)	36
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	55
ZraI	GACGTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.