Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Forward (+)

3092369 .. 3095364

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGACTGACCATAGAGCTGAAGCCAACGCCGTTTCCGGCCAGCCCCTGCTCAAGAAGAAGCCCAAAAGAAACCTGTACGCCATCGGTTGCGCCATTTTGGCTTCCATGACTTCAATCTTGCTGGGCTACGATATTGGTGTGATGAGTGGAGCTTCAATCTACATACAAGAGGACCTGAAAATCACGGACGTGGAAGTTGAGATCCTCATCGGGATTCTGAACCTCTACTCGCTCATCGGCTCCGCCGCCGCCGGCAGAACGTCTGACTGGATTGGCCGCCGGTACACTATCGTTTTCGCCGGAGCCATATTCTTCACCGGAGCTCTCCTCATGGGCTTCGCCACCAACTTCGCCTTCCTCATGGTCGGTCGGTTCGTCGCTGGAATCGGCGTCGGCTACGCCCTCATGATCGCTCCGGTCTACAACGCCGAGGTCTCTCCGGCGTCGTCTCGCGGCGCTCTCACGTCTTTCCCGGAGGTGGAATCTGATGCTGTGTTTTCCAGCACCTGTTTCAAAAGGATTTTCATGTACAAACTTCAGGAGCCATGCCGTGAGTTGTGGTCAACAGGGTCAACACCACCATCGCTAACAGAGCTGCTGATGAACAGTGACCCATTTGTACTGTGCCAGTTGCTTGCTCTTTTGAAAGGTTCTGCTGCACTCATCAATCCAAGTGGAGAGAGGGCAGGATTCTTTGGGACGGAGCTGTCACTTTCTTTTTCTCAGTGCTCAACAAAAGGAATATCACGCAGCAATGATAAAAGTAAAAGAAGATCCAACAGCAAATCCACCGAAAAAAAGAAAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

271

Amino Acids

29.14

Weight (kDa)

9.27

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	1 cut(s)	453
AciI	CCGC	5 cut(s)	243, 246, 249, 277, 453
AclWI	GGATC	2 cut(s)	196, 768
AcoI	YGGCCR	2 cut(s)	37, 274
AcuI	CTGAAG	2 cut(s)	39, 521
AcyI	GRCGYC	2 cut(s)	390, 443
AfaI	GTAC	4 cut(s)	77, 284, 530, 621
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	4 cut(s)	114, 156, 514, 646
AjiI	CACGTC	2 cut(s)	190, 465
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	5 cut(s)	17, 152, 323, 595, 706
AluI	AGCT	5 cut(s)	17, 152, 323, 595, 706
Alw21I	GWGCWC	2 cut(s)	325, 731
Alw26I	GTCTC	2 cut(s)	439, 453
AlwI	GGATC	2 cut(s)	196, 768
AlwNI	CAGNNNCTG	2 cut(s)	46, 507
AoxI	GGCC	2 cut(s)	37, 274
ApeKI	GCWGC	3 cut(s)	595, 656, 750
AspLEI	GCGC	2 cut(s)	92, 458
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	325
Bbv12I	GWGCWC	2 cut(s)	325, 731
BbvI	GCAGC	3 cut(s)	582, 643, 762
BccI	CCATC	2 cut(s)	89, 589
BceAI	ACGGC	2 cut(s)	14, 534
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	2 cut(s)	439, 453
BfoI	RGCGCY	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	7 cut(s)	246, 249, 277, 454, 596, 657, 751
BlsI	GCNGC	7 cut(s)	247, 250, 278, 455, 597, 658, 752
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	172
BmgBI	CACGTC	2 cut(s)	190, 465
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	3 cut(s)	241, 304, 543
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	206
BsaHI	GRCGYC	2 cut(s)	390, 443
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	2 cut(s)	317, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	2 cut(s)	251, 279
Bse1I	ACTGG	2 cut(s)	272, 628
Bse3DI	GCAATG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	429
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	2 cut(s)	272, 628
BseRI	GAGGAG	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	582, 643, 762
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	39, 276
BsiEI	CGRYCG	1 cut(s)	370
BsiHKAI	GWGCWC	2 cut(s)	325, 731
BsiSI	CCGG	8 cut(s)	36, 252, 280, 300, 318, 416, 440, 473
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	2 cut(s)	439, 453
BsmBI	CGTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	712
BsnI	GGCC	2 cut(s)	39, 276
Bso31I	GGTCTC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	325, 731
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	201, 408, 773
BspACI	CCGC	5 cut(s)	243, 246, 249, 277, 453
BspANI	GGCC	2 cut(s)	39, 276
BspCNI	CTCAG	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	3 cut(s)	241, 304, 543
BspPI	GGATC	2 cut(s)	196, 768
BspTNI	GGTCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	760
BsrFI	RCCGGY	2 cut(s)	251, 279
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	272, 628
BssAI	RCCGGY	2 cut(s)	251, 279
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	201, 408, 773
BssNI	GRCGYC	2 cut(s)	390, 443
Bst4CI	ACNGT	2 cut(s)	608, 624
BstACI	GRCGYC	2 cut(s)	390, 443
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	3 cut(s)	41, 253, 636
BstDEI	CTNAG	1 cut(s)	723
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	2 cut(s)	92, 458
BstKTI	GATC	3 cut(s)	204, 411, 776
BstMAI	GTCTC	2 cut(s)	439, 453
BstMBI	GATC	3 cut(s)	201, 408, 773
BstMCI	CGRYCG	1 cut(s)	370
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 592
BstSCI	CCNGG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	582, 643, 762
BstX2I	RGATCY	2 cut(s)	201, 773
BstYI	RGATCY	2 cut(s)	201, 773
BsuRI	GGCC	2 cut(s)	39, 276
BtgZI	GCGATG	1 cut(s)	567
BtrI	CACGTC	2 cut(s)	190, 465
BtsIMutI	CAGTG	2 cut(s)	613, 731
Cac8I	GCNNGC	3 cut(s)	41, 253, 636
CaiI	CAGNNNCTG	2 cut(s)	46, 507
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	2 cut(s)	92, 458
Cfr10I	RCCGGY	2 cut(s)	251, 279
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	2 cut(s)	379, 432
Csp6I	GTAC	4 cut(s)	76, 283, 529, 620
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	6 cut(s)	106, 331, 361, 406, 526, 546
CviQI	GTAC	4 cut(s)	76, 283, 529, 620
DdeI	CTNAG	1 cut(s)	723
DpnI	GATC	3 cut(s)	203, 410, 775
DpnII	GATC	3 cut(s)	201, 408, 773
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	2 cut(s)	37, 274
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	172
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	39, 521
EcoICRI	GAGCTC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	6 cut(s)	109, 334, 364, 409, 529, 549
FaiI	YATR	9 cut(s)	12, 107, 164, 308, 332, 362, 407, 527, 547
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	6 cut(s)	105, 330, 360, 405, 525, 545
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	7 cut(s)	246, 249, 277, 454, 596, 657, 751
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	7 cut(s)	246, 249, 277, 454, 596, 657, 751
GlaI	GCGC	2 cut(s)	91, 457
GluI	GCNGC	7 cut(s)	246, 249, 277, 454, 596, 657, 751
GsaI	CCCAGC	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	39, 276
HapII	CCGG	8 cut(s)	36, 252, 280, 300, 318, 416, 440, 473
HgaI	GACGC	2 cut(s)	379, 432
HhaI	GCGC	2 cut(s)	92, 458
Hin1I	GRCGYC	2 cut(s)	390, 443
Hin1II	CATG	6 cut(s)	109, 334, 364, 409, 529, 549
Hin6I	GCGC	2 cut(s)	90, 456
HinP1I	GCGC	2 cut(s)	90, 456
HincII	GTYRAC	2 cut(s)	564, 573
HindII	GTYRAC	2 cut(s)	564, 573
HinfI	GANTC	4 cut(s)	214, 384, 482, 690
HpaII	CCGG	8 cut(s)	36, 252, 280, 300, 318, 416, 440, 473
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	4 cut(s)	285, 421, 564, 573
Hpy188I	TCNGA	3 cut(s)	219, 265, 487
Hpy188III	TCNNGA	4 cut(s)	52, 211, 406, 539
Hpy8I	GTNNAC	4 cut(s)	285, 421, 564, 573
Hpy99I	CGWCG	3 cut(s)	380, 395, 448
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	608, 624
HpyCH4IV	ACGT	3 cut(s)	189, 260, 464
HpyCH4V	TGCA	1 cut(s)	659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 592
HpyF3I	CTNAG	1 cut(s)	723
HpySE526I	ACGT	3 cut(s)	189, 260, 464
Hsp92I	GRCGYC	2 cut(s)	390, 443
Hsp92II	CATG	6 cut(s)	109, 334, 364, 409, 529, 549
HspAI	GCGC	2 cut(s)	90, 456
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	201, 408, 773
LmnI	GCTCC	7 cut(s)	149, 245, 302, 320, 418, 541, 703
Lsp1109I	GCAGC	3 cut(s)	582, 643, 762
LweI	GCATC	1 cut(s)	478
MaeII	ACGT	3 cut(s)	189, 260, 464
MaeIII	GTNAC	2 cut(s)	608, 708
MalI	GATC	3 cut(s)	203, 410, 775
MboI	GATC	3 cut(s)	201, 408, 773
MboII	GAAGA	3 cut(s)	67, 304, 783
MflI	RGATCY	2 cut(s)	201, 773
MhlI	GDGCHC	2 cut(s)	325, 731
MmeI	TCCRAC	1 cut(s)	801
MnlI	CCTC	9 cut(s)	163, 215, 233, 338, 368, 413, 424, 469, 675
MroNI	GCCGGC	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	8 cut(s)	36, 252, 280, 300, 318, 416, 440, 473
MspR9I	CCNGG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	98, 592
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	3 cut(s)	201, 408, 773
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	6 cut(s)	109, 334, 364, 409, 529, 549
NlaIV	GGNNCC	3 cut(s)	241, 304, 543
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	2 cut(s)	608, 708
OliI	CACNNNNGTG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	4 cut(s)	214, 384, 482, 690
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	7 cut(s)	247, 250, 278, 455, 597, 658, 752
PpuMI	RGGWCCY	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	241, 304, 543
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
PstNI	CAGNNNCTG	2 cut(s)	46, 507
PsuI	RGATCY	2 cut(s)	201, 773
RsaI	GTAC	4 cut(s)	77, 284, 530, 621
RsaNI	GTAC	4 cut(s)	76, 283, 529, 620
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	325
SatI	GCNGC	7 cut(s)	246, 249, 277, 454, 596, 657, 751
Sau3AI	GATC	3 cut(s)	201, 408, 773
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	473
SduI	GDGCHC	2 cut(s)	325, 731
SfaNI	GCATC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	5 cut(s)	243, 246, 249, 277, 453
SstI	GAGCTC	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	608, 624
TaiI	ACGT	3 cut(s)	192, 263, 467
TaqII	GACCGA	1 cut(s)	356
TatI	WGTACW	2 cut(s)	528, 619
TauI	GCSGC	4 cut(s)	248, 251, 279, 456
TfiI	GAWTC	4 cut(s)	214, 384, 482, 690
TscAI	CASTG	2 cut(s)	613, 731
TseFI	GTSAC	2 cut(s)	608, 708
TseI	GCWGC	3 cut(s)	595, 656, 750
Tsp45I	GTSAC	2 cut(s)	608, 708
TspDTI	ATGAA	2 cut(s)	514, 617
TspGWI	ACGGA	2 cut(s)	200, 716
TspRI	CASTG	2 cut(s)	613, 731
VpaK11BI	GGWCC	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.