Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Forward (+)

18834767 .. 18837444

Gene Structure 2678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG121100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTGACCGGAGAGCTGAGGAAAATGTCGTCTCCGGCCAACCCACCCAGAAAACCATTGCGAATTTCGATCCCGCACTCAAGCACAAGAGAAACAAGTACGCTTTAGCTTGTGCTACGTTGGCTTCCATGACTTCGATCCTACTCGGTTATGATATTGGTGTAATGAGTGGAGCGGCGATCTTCATCAAAGACGACCTCCATATCTCCGACGTGCAGGTCGAAGTTCTAGTTGGAATTCTGAATCTCTACTCCCTCATCGGATCCGCCGCCGGCGGCAGGACGTCCGACTGGATTGGACGACGGTATACCATAGTCCTCGCCGGAGCCATCTTCTTCGCGGGATCTCTTCTCATGGGCTTCGCCACCAACTACTCGTTCCTCATGTTCGGGAGATTTGTTGCTGGAATCGGCGTCGGTTATGCCCTCATGATTGCTCCTGTCTACACCGCCGAAGTTTCTCCGGCGTCGTCTCGTGGTTTCCTCACGTCTTTTGCTGATTTGTTTATCAATGTCGGAATCTTATTGGGGTACATATCCAACTGGGCCTTTTCCAAGCTCGCACTTAACCTAGGGTGGCGTCTCATGCTTGGCGTCGGCGCCATTCCCTCCGTCTTCCTTGCCATTGGCGTCTTAGCCATGCCGGAATCCCCTCGCTGGCTGGTCATGCAGGGCCGCCTCGGCGACGCCAAGCAAGTCCTCGACCGAACCTCAGACTCCATGGAAGAGTCCAAACTCCGACTCGCCGACATCAAAGAAGCCGCTGGAATCCCCGAACACTGCAACGACGACGTCGTTCAAGTCCCAAAACGCAGCCATGGCGAAGACGTCTGGAAAGGGCTCATCCTCCACCCCACCCCCGCAGTCCGTCACATTCTCATCGCCGCCGTCGGTATGCACTTCTTCCAACAAGCCTCCGGCATTGACGCAGGTCCGGACTTGAGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

316

Amino Acids

34.09

Weight (kDa)

7.06

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	38 - 309	4.6e-60	Sugar (and other) transporter
MFS_1	PF07690	45 - 229	1.1e-23	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	3 cut(s)	287, 795, 831
Acc36I	ACCTGC	2 cut(s)	208, 920
AccB1I	GGYRCC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	308, 444
AccII	CGCG	1 cut(s)	341
AccIII	TCCGGA	1 cut(s)	934
AclWI	GGATC	5 cut(s)	65, 133, 258, 271, 352
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	64, 237
AfaI	GTAC	2 cut(s)	101, 533
AfiI	CCNNNNNNNGG	2 cut(s)	279, 657
AgsI	TTSAA	1 cut(s)	800
AjiI	CACGTC	2 cut(s)	214, 489
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 362, 394
AluBI	AGCT	3 cut(s)	17, 110, 559
AluI	AGCT	3 cut(s)	17, 110, 559
Alw26I	GTCTC	3 cut(s)	37, 477, 587
AlwI	GGATC	5 cut(s)	65, 133, 258, 271, 352
Aor13HI	TCCGGA	1 cut(s)	934
AoxI	GGCC	3 cut(s)	37, 546, 673
ApeKI	GCWGC	1 cut(s)	813
ApoI	RAATTY	2 cut(s)	64, 237
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	3 cut(s)	546, 673, 932
AvaII	GGWCC	1 cut(s)	932
AvrII	CCTAGG	1 cut(s)	571
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	843
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	607, 831
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	825
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	872
BcoDI	GTCTC	3 cut(s)	37, 477, 587
BfaI	CTAG	2 cut(s)	230, 572
BfoI	RGCGCY	1 cut(s)	603
BfuAI	ACCTGC	2 cut(s)	208, 920
BglI	GCCNNNNNGGC	1 cut(s)	681
BisI	GCNGC	7 cut(s)	177, 270, 277, 676, 762, 814, 885
BlnI	CCTAGG	1 cut(s)	571
BlsI	GCNGC	7 cut(s)	178, 271, 278, 677, 763, 815, 886
Bme18I	GGWCC	1 cut(s)	932
BmgBI	CACGTC	2 cut(s)	214, 489
BmgT120I	GGNCC	3 cut(s)	546, 673, 932
BmiI	GGNNCC	3 cut(s)	265, 328, 601
BmrI	ACTGGG	1 cut(s)	553
BmuI	ACTGGG	1 cut(s)	553
BoxI	GACNNNNGTC	1 cut(s)	930
BpiI	GAAGAC	2 cut(s)	607, 831
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	4 cut(s)	571, 679, 720, 817
BsaWI	WCCGGW	2 cut(s)	9, 934
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 657
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	296, 548
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	934
BseDI	CCNNGG	4 cut(s)	571, 679, 720, 817
BseGI	GGATG	1 cut(s)	843
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	279, 657
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	9, 726
BseNI	ACTGG	2 cut(s)	296, 548
BseXI	GCAGC	1 cut(s)	825
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	706
BshFI	GGCC	3 cut(s)	39, 548, 675
BshNI	GGYRCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	706
BsiSI	CCGG	8 cut(s)	10, 36, 273, 324, 464, 644, 918, 935
BslFI	GGGAC	1 cut(s)	788
BslI	CCNNNNNNNGG	2 cut(s)	279, 657
BsmAI	GTCTC	3 cut(s)	37, 477, 587
BsmBI	CGTCTC	3 cut(s)	37, 477, 587
BsmFI	GGGAC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	39, 548, 675
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp13I	TCCGGA	1 cut(s)	934
Bsp143I	GATC	5 cut(s)	70, 138, 180, 263, 344
Bsp19I	CCATGG	2 cut(s)	720, 817
BspANI	GGCC	3 cut(s)	39, 548, 675
BspCNI	CTCAG	2 cut(s)	10, 725
BspEI	TCCGGA	1 cut(s)	934
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	265, 328, 601
BspMI	ACCTGC	2 cut(s)	208, 920
BspPI	GGATC	5 cut(s)	65, 133, 258, 271, 352
BspT107I	GGYRCC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	296, 548
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	571, 679, 720, 817
BssMI	GATC	5 cut(s)	70, 138, 180, 263, 344
BssNAI	GTATAC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	571, 720, 817
Bst1107I	GTATAC	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	2 cut(s)	354, 720
BstC8I	GCNNGC	3 cut(s)	274, 561, 659
BstDEI	CTNAG	3 cut(s)	18, 634, 712
BstDSI	CCRYGG	2 cut(s)	720, 817
BstF5I	GGATG	1 cut(s)	843
BstFNI	CGCG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	602
BstKTI	GATC	5 cut(s)	73, 141, 183, 266, 347
BstMAI	GTCTC	3 cut(s)	37, 477, 587
BstMBI	GATC	5 cut(s)	70, 138, 180, 263, 344
BstMCI	CGRYCG	1 cut(s)	706
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 586, 667, 681, 819
BstPAI	GACNNNNGTC	1 cut(s)	930
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	825
BstV2I	GAAGAC	2 cut(s)	607, 831
BstX2I	RGATCY	2 cut(s)	263, 344
BstYI	RGATCY	2 cut(s)	263, 344
BstZ17I	GTATAC	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	39, 548, 675
BtgI	CCRYGG	2 cut(s)	720, 817
BtgZI	GCGATG	1 cut(s)	865
BtrI	CACGTC	2 cut(s)	214, 489
BtsCI	GGATG	1 cut(s)	843
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
BveI	ACCTGC	2 cut(s)	208, 920
Cac8I	GCNNGC	3 cut(s)	274, 561, 659
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	602
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	546, 673, 932
CseI	GACGC	7 cut(s)	403, 456, 569, 583, 619, 695, 935
Csp6I	GTAC	2 cut(s)	100, 532
CviAII	CATG	9 cut(s)	130, 355, 385, 430, 586, 640, 667, 721, 818
CviQI	GTAC	2 cut(s)	100, 532
DdeI	CTNAG	3 cut(s)	18, 634, 712
DinI	GGCGCC	1 cut(s)	601
DpnI	GATC	5 cut(s)	72, 140, 182, 265, 346
DpnII	GATC	5 cut(s)	70, 138, 180, 263, 344
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	354, 720
EarI	CTCTTC	2 cut(s)	354, 720
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	3 cut(s)	571, 720, 817
Eco24I	GRGCYC	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	237
EcoT14I	CCWWGG	3 cut(s)	571, 720, 817
EcoT38I	GRGCYC	1 cut(s)	843
EgeI	GGCGCC	1 cut(s)	601
EheI	GGCGCC	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	571, 720, 817
Esp3I	CGTCTC	3 cut(s)	37, 477, 587
FaeI	CATG	9 cut(s)	133, 358, 388, 433, 589, 643, 670, 724, 821
FaqI	GGGAC	1 cut(s)	788
FatI	CATG	9 cut(s)	129, 354, 384, 429, 585, 639, 666, 720, 817
FauI	CCCGC	3 cut(s)	82, 334, 868
FblI	GTMKAC	2 cut(s)	308, 444
Fnu4HI	GCNGC	7 cut(s)	177, 270, 277, 676, 762, 814, 885
FokI	GGATG	1 cut(s)	830
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	7 cut(s)	177, 270, 277, 676, 762, 814, 885
FspBI	CTAG	2 cut(s)	230, 572
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	7 cut(s)	177, 270, 277, 676, 762, 814, 885
HaeII	RGCGCY	1 cut(s)	603
HaeIII	GGCC	3 cut(s)	39, 548, 675
HapII	CCGG	8 cut(s)	10, 36, 273, 324, 464, 644, 918, 935
HgaI	GACGC	7 cut(s)	403, 456, 569, 583, 619, 695, 935
HhaI	GCGC	1 cut(s)	602
Hin1II	CATG	9 cut(s)	133, 358, 388, 433, 589, 643, 670, 724, 821
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HinfI	GANTC	8 cut(s)	244, 408, 519, 647, 716, 728, 741, 768
HpaII	CCGG	8 cut(s)	10, 36, 273, 324, 464, 644, 918, 935
Hpy166II	GTNNAC	2 cut(s)	309, 445
Hpy188I	TCNGA	7 cut(s)	211, 243, 263, 289, 518, 715, 740
Hpy188III	TCNNGA	4 cut(s)	391, 430, 832, 935
Hpy8I	GTNNAC	2 cut(s)	309, 445
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	6 cut(s)	119, 213, 284, 488, 792, 828
HpyCH4V	TGCA	4 cut(s)	217, 670, 783, 898
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 586, 667, 681, 819
HpyF3I	CTNAG	3 cut(s)	18, 634, 712
HpySE526I	ACGT	6 cut(s)	119, 213, 284, 488, 792, 828
Hsp92II	CATG	9 cut(s)	133, 358, 388, 433, 589, 643, 670, 724, 821
HspAI	GCGC	1 cut(s)	600
KasI	GGCGCC	1 cut(s)	599
Kpn2I	TCCGGA	1 cut(s)	934
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	70, 138, 180, 263, 344
LmnI	GCTCC	3 cut(s)	173, 326, 442
Lsp1109I	GCAGC	1 cut(s)	825
MaeI	CTAG	2 cut(s)	230, 572
MaeII	ACGT	6 cut(s)	119, 213, 284, 488, 792, 828
MaeIII	GTNAC	1 cut(s)	869
MalI	GATC	5 cut(s)	72, 140, 182, 265, 346
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	5 cut(s)	70, 138, 180, 263, 344
MboII	GAAGA	8 cut(s)	175, 325, 328, 341, 607, 737, 836, 895
MflI	RGATCY	2 cut(s)	263, 344
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	2 cut(s)	64, 237
Mly113I	GGCGCC	1 cut(s)	600
MlyI	GAGTC	3 cut(s)	710, 735, 737
MmeI	TCCRAC	7 cut(s)	214, 234, 312, 496, 564, 763, 931
MreI	CGCCGGCG	1 cut(s)	272
MroI	TCCGGA	1 cut(s)	934
MroNI	GCCGGC	1 cut(s)	272
MseI	TTAA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	8 cut(s)	10, 36, 273, 324, 464, 644, 918, 935
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	5 cut(s)	122, 586, 667, 681, 819
NaeI	GCCGGC	1 cut(s)	274
NarI	GGCGCC	1 cut(s)	600
NcoI	CCATGG	2 cut(s)	720, 817
NdeII	GATC	5 cut(s)	70, 138, 180, 263, 344
NgoMIV	GCCGGC	1 cut(s)	272
NlaIII	CATG	9 cut(s)	133, 358, 388, 433, 589, 643, 670, 724, 821
NlaIV	GGNNCC	3 cut(s)	265, 328, 601
NmeAIII	GCCGAG	1 cut(s)	660
NmuCI	GTSAC	1 cut(s)	869
PagI	TCATGA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 792
PdiI	GCCGGC	1 cut(s)	274
PfeI	GAWTC	5 cut(s)	244, 408, 519, 647, 768
PflFI	GACNNNGTC	1 cut(s)	791
PkrI	GCNGC	7 cut(s)	178, 271, 278, 677, 763, 815, 886
PleI	GAGTC	3 cut(s)	710, 735, 736
PluTI	GGCGCC	1 cut(s)	603
PpsI	GAGTC	3 cut(s)	710, 735, 736
PshAI	GACNNNNGTC	1 cut(s)	930
PspN4I	GGNNCC	3 cut(s)	265, 328, 601
PspPI	GGNCC	3 cut(s)	546, 673, 932
PsuI	RGATCY	2 cut(s)	263, 344
PsyI	GACNNNGTC	1 cut(s)	791
RsaI	GTAC	2 cut(s)	101, 533
RsaNI	GTAC	2 cut(s)	100, 532
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	7 cut(s)	177, 270, 277, 676, 762, 814, 885
Sau3AI	GATC	5 cut(s)	70, 138, 180, 263, 344
Sau96I	GGNCC	3 cut(s)	546, 673, 932
SchI	GAGTC	3 cut(s)	710, 735, 737
SduI	GDGCHC	1 cut(s)	843
SfoI	GGCGCC	1 cut(s)	601
SgrAI	CRCCGGYG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	932
SmlI	CTYRAG	2 cut(s)	80, 940
SmoI	CTYRAG	2 cut(s)	80, 940
Sse9I	AATT	2 cut(s)	64, 237
SspDI	GGCGCC	1 cut(s)	599
SspMI	CTAG	2 cut(s)	230, 572
StyI	CCWWGG	3 cut(s)	571, 720, 817
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	6 cut(s)	122, 216, 287, 491, 795, 831
TaqI	TCGA	4 cut(s)	69, 137, 222, 702
TaqII	GACCGA	1 cut(s)	720
TasI	AATT	2 cut(s)	64, 237
TauI	GCSGC	6 cut(s)	179, 272, 279, 678, 764, 887
TfiI	GAWTC	5 cut(s)	244, 408, 519, 647, 768
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	1 cut(s)	785
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	1 cut(s)	813
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	1 cut(s)	175
TspGWI	ACGGA	2 cut(s)	601, 857
TspRI	CASTG	1 cut(s)	785
Tth111I	GACNNNGTC	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	2 cut(s)	64, 237
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	308, 444
XspI	CTAG	2 cut(s)	230, 572
ZraI	GACGTC	3 cut(s)	285, 793, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.