Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Reverse (-)

53197497 .. 53200002

Gene Structure 2506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCTGACCGGAGGGCTGAGGAAAATGTCGTCTCCGGCCAACCCACCCAGAAAACCATTGAGGATTTCGATCCCGCACCCAAGCACAAGAGAAACAAGTACGCTTTAGCTTGTGCTATGTTGGCTTTCATGACTTCGATCCTACTCGGTTATGATATTGGTGTAATGAGTGGAGCGGCGATCTTCATCAAAGACGACCTCCATATCTCCGACGTGCAGGTCGAAGTTCTAGTTGGAATTCTGAATCTCTACTCCCTCATCGGATCCGCCGCCGCCGGCAGGACGTCCGACTGGATTGGACGTCGGTATACCATAGTTCTCGCCGGATCTCTTCTCATGGGCTTCGCCACCAACTACTCGTTCCTCATGTTCGGGAGATTTGTTGCTGGAATCGGCGTCGGTTATGCCCTCATGATTGCTCCTGTCTACACCTCCGAAGTTTCTCCAGCGTTGTCTCGTGGTTTCCTCACGTCGTTTGCTGATGTAGGGTGGCGTCTCATGCTTGGCGTCGGCGCCATCCCCTCCTTCTTCCTTGCCATTGGCGTCTTAGCCATGCCGAATCCCCTCGGCGGCTGGTCATGCGGGGCCACCTCGGCGACACCAAGCAAGTCCTCGACCGAACCTCGGACTCCATGGAAGAGTCCAAACTCGGACTCGCCGACATCAAAGAAGCCGCCGGAATCCCCGAACACCGCAACGATGACGTTGTTCAAGTCCCAAAACGCAGCCATGGTGAAGACGTGCGGAAAGGGCTCATCCTCCACCCCACCCCCGCCGTCCGTCACATTCTCATCGCAGCCGTTGGTATGCACTTCTTCCAACAAGCCTCCGGCATTGACGCCGTCGTTTTATACAGCCCGAGAATCTTCAAAAAGGCGCCGAATCACGTCCAAGAACAAACTCCTCATTGCCACCATAGCCGTCGGATCTGTCGAGACGGTCTTCATCCTCGTCCCAACGTTTTTCTGGACGGGATGGGACGTCGTCCTTTGCTTCTTTGTAGCGTGGGCGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

338

Amino Acids

36.14

Weight (kDa)

9.45

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	39 - 162	2e-20	Sugar (and other) transporter
MFS_1	PF07690	43 - 178	3.4e-09	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	3 cut(s)	287, 304, 984
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	2 cut(s)	512, 876
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	308, 426
AclI	AACGTT	1 cut(s)	959
AclWI	GGATC	6 cut(s)	65, 133, 258, 271, 334, 934
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	279, 569, 624
AgsI	TTSAA	2 cut(s)	712, 870
AjiI	CACGTC	4 cut(s)	214, 471, 741, 888
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 344, 376
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	4 cut(s)	37, 459, 500, 929
AlwI	GGATC	6 cut(s)	65, 133, 258, 271, 334, 934
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	2 cut(s)	37, 585
ApeKI	GCWGC	2 cut(s)	725, 796
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	515, 879
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	858
BamHI	GGATCC	1 cut(s)	263
BanI	GGYRCC	2 cut(s)	512, 876
BanII	GRGCYC	1 cut(s)	755
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	743, 934
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	737, 808
BccI	CCATC	2 cut(s)	524, 969
BceAI	ACGGC	4 cut(s)	760, 784, 826, 905
BcoDI	GTCTC	4 cut(s)	37, 459, 500, 929
BfaI	CTAG	1 cut(s)	230
BfoI	RGCGCY	2 cut(s)	516, 880
BfuAI	ACCTGC	1 cut(s)	208
BglI	GCCNNNNNGGC	1 cut(s)	593
BisI	GCNGC	7 cut(s)	177, 270, 273, 571, 674, 726, 797
BlsI	GCNGC	7 cut(s)	178, 271, 274, 572, 675, 727, 798
BmeT110I	CYCGRG	1 cut(s)	858
BmgBI	CACGTC	4 cut(s)	214, 471, 741, 888
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	4 cut(s)	265, 514, 586, 878
BpiI	GAAGAC	2 cut(s)	743, 934
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	69, 185
BsaJI	CCNNGG	5 cut(s)	565, 591, 623, 632, 729
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 569, 624
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	906
Bse8I	GATNNNNATC	2 cut(s)	69, 185
BseDI	CCNNGG	5 cut(s)	565, 591, 623, 632, 729
BseGI	GGATG	4 cut(s)	516, 755, 945, 980
BseJI	GATNNNNATC	2 cut(s)	69, 185
BseLI	CCNNNNNNNGG	3 cut(s)	279, 569, 624
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	893
BseXI	GCAGC	2 cut(s)	737, 808
BsgI	GTGCAG	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	39, 587
BshNI	GGYRCC	2 cut(s)	512, 876
BsiEI	CGRYCG	1 cut(s)	618
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	6 cut(s)	10, 36, 276, 324, 677, 830
BslFI	GGGAC	3 cut(s)	700, 938, 992
BslI	CCNNNNNNNGG	3 cut(s)	279, 569, 624
BsmAI	GTCTC	4 cut(s)	37, 459, 500, 929
BsmBI	CGTCTC	3 cut(s)	37, 500, 929
BsmFI	GGGAC	3 cut(s)	700, 938, 992
BsnI	GGCC	2 cut(s)	39, 587
BsoBI	CYCGRG	1 cut(s)	858
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
Bsp19I	CCATGG	2 cut(s)	632, 729
BspANI	GGCC	2 cut(s)	39, 587
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	2 cut(s)	129, 411
BspLI	GGNNCC	4 cut(s)	265, 514, 586, 878
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	6 cut(s)	65, 133, 258, 271, 334, 934
BspT107I	GGYRCC	2 cut(s)	512, 876
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	5 cut(s)	565, 591, 623, 632, 729
BssMI	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
BssNAI	GTATAC	1 cut(s)	309
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	632, 729
Bst1107I	GTATAC	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	456
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	2 cut(s)	336, 632
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	18, 547
BstDSI	CCRYGG	2 cut(s)	632, 729
BstF5I	GGATG	4 cut(s)	516, 755, 945, 980
BstH2I	RGCGCY	2 cut(s)	516, 880
BstHHI	GCGC	2 cut(s)	515, 879
BstKTI	GATC	6 cut(s)	73, 141, 183, 266, 329, 929
BstMAI	GTCTC	4 cut(s)	37, 459, 500, 929
BstMBI	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
BstMCI	CGRYCG	1 cut(s)	618
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 499, 579, 593, 750, 917
BstV1I	GCAGC	2 cut(s)	737, 808
BstV2I	GAAGAC	2 cut(s)	743, 934
BstX2I	RGATCY	3 cut(s)	263, 326, 926
BstYI	RGATCY	3 cut(s)	263, 326, 926
BstZ17I	GTATAC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	39, 587
BtgI	CCRYGG	2 cut(s)	632, 729
BtgZI	GCGATG	1 cut(s)	777
BtrI	CACGTC	4 cut(s)	214, 471, 741, 888
BtsCI	GGATG	4 cut(s)	516, 755, 945, 980
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	2 cut(s)	129, 411
CfoI	GCGC	2 cut(s)	515, 879
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	585
CseI	GACGC	5 cut(s)	385, 482, 496, 532, 847
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	9 cut(s)	130, 337, 367, 412, 499, 553, 579, 633, 730
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	18, 547
DinI	GGCGCC	2 cut(s)	514, 878
DpnI	GATC	6 cut(s)	72, 140, 182, 265, 328, 928
DpnII	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	336, 632
EarI	CTCTTC	2 cut(s)	336, 632
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	632, 729
Eco24I	GRGCYC	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	858
EcoRI	GAATTC	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	632, 729
EcoT38I	GRGCYC	1 cut(s)	755
EgeI	GGCGCC	2 cut(s)	514, 878
EheI	GGCGCC	2 cut(s)	514, 878
ErhI	CCWWGG	2 cut(s)	632, 729
Esp3I	CGTCTC	3 cut(s)	37, 500, 929
FaeI	CATG	9 cut(s)	133, 340, 370, 415, 502, 556, 582, 636, 733
FaqI	GGGAC	3 cut(s)	700, 938, 992
FatI	CATG	9 cut(s)	129, 336, 366, 411, 498, 552, 578, 632, 729
FauI	CCCGC	4 cut(s)	82, 575, 780, 1003
FblI	GTMKAC	2 cut(s)	308, 426
Fnu4HI	GCNGC	7 cut(s)	177, 270, 273, 571, 674, 726, 797
FokI	GGATG	4 cut(s)	503, 742, 932, 987
FriOI	GRGCYC	1 cut(s)	755
Fsp4HI	GCNGC	7 cut(s)	177, 270, 273, 571, 674, 726, 797
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	2 cut(s)	514, 878
GluI	GCNGC	7 cut(s)	177, 270, 273, 571, 674, 726, 797
GsuI	CTGGAG	1 cut(s)	429
HaeII	RGCGCY	2 cut(s)	516, 880
HaeIII	GGCC	2 cut(s)	39, 587
HapII	CCGG	6 cut(s)	10, 36, 276, 324, 677, 830
HgaI	GACGC	5 cut(s)	385, 482, 496, 532, 847
HhaI	GCGC	2 cut(s)	515, 879
Hin1II	CATG	9 cut(s)	133, 340, 370, 415, 502, 556, 582, 636, 733
Hin6I	GCGC	2 cut(s)	513, 877
HinP1I	GCGC	2 cut(s)	513, 877
HinfI	GANTC	9 cut(s)	244, 390, 559, 628, 640, 653, 680, 863, 882
HpaII	CCGG	6 cut(s)	10, 36, 276, 324, 677, 830
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	309, 427
Hpy188I	TCNGA	8 cut(s)	211, 243, 263, 289, 436, 627, 652, 926
Hpy188III	TCNNGA	5 cut(s)	130, 373, 412, 934, 967
Hpy8I	GTNNAC	2 cut(s)	309, 427
Hpy99I	CGWCG	8 cut(s)	215, 306, 401, 475, 512, 847, 926, 986
HpyAV	CCTTC	1 cut(s)	535
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4IV	ACGT	9 cut(s)	213, 284, 301, 470, 704, 740, 887, 959, 981
HpyCH4V	TGCA	2 cut(s)	217, 810
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 499, 579, 593, 750, 917
HpyF3I	CTNAG	2 cut(s)	18, 547
HpySE526I	ACGT	9 cut(s)	213, 284, 301, 470, 704, 740, 887, 959, 981
Hsp92II	CATG	9 cut(s)	133, 340, 370, 415, 502, 556, 582, 636, 733
HspAI	GCGC	2 cut(s)	513, 877
KasI	GGCGCC	2 cut(s)	512, 876
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
LmnI	GCTCC	2 cut(s)	173, 424
Lsp1109I	GCAGC	2 cut(s)	737, 808
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	9 cut(s)	213, 284, 301, 470, 704, 740, 887, 959, 981
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	6 cut(s)	72, 140, 182, 265, 328, 928
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
MboII	GAAGA	8 cut(s)	175, 323, 520, 649, 748, 807, 858, 934
MflI	RGATCY	3 cut(s)	263, 326, 926
MhlI	GDGCHC	1 cut(s)	755
MluCI	AATT	1 cut(s)	237
Mly113I	GGCGCC	2 cut(s)	513, 877
MlyI	GAGTC	3 cut(s)	622, 647, 649
MmeI	TCCRAC	5 cut(s)	214, 234, 312, 843, 904
MroNI	GCCGGC	1 cut(s)	275
MspI	CCGG	6 cut(s)	10, 36, 276, 324, 677, 830
MwoI	GCNNNNNNNGC	6 cut(s)	122, 499, 579, 593, 750, 917
NaeI	GCCGGC	1 cut(s)	277
NarI	GGCGCC	2 cut(s)	513, 877
NcoI	CCATGG	2 cut(s)	632, 729
NdeII	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	9 cut(s)	133, 340, 370, 415, 502, 556, 582, 636, 733
NlaIV	GGNNCC	4 cut(s)	265, 514, 586, 878
NmeAIII	GCCGAG	2 cut(s)	546, 572
NmuCI	GTSAC	1 cut(s)	781
PagI	TCATGA	2 cut(s)	129, 411
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 656, 930
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	6 cut(s)	244, 390, 559, 680, 863, 882
PflFI	GACNNNGTC	2 cut(s)	841, 983
PkrI	GCNGC	7 cut(s)	178, 271, 274, 572, 675, 727, 798
PleI	GAGTC	3 cut(s)	622, 647, 648
PluTI	GGCGCC	2 cut(s)	516, 880
PpsI	GAGTC	3 cut(s)	622, 647, 648
Psp1406I	AACGTT	1 cut(s)	959
PspN4I	GGNNCC	4 cut(s)	265, 514, 586, 878
PspPI	GGNCC	1 cut(s)	585
PsuI	RGATCY	3 cut(s)	263, 326, 926
PsyI	GACNNNGTC	2 cut(s)	841, 983
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	7 cut(s)	177, 270, 273, 571, 674, 726, 797
Sau3AI	GATC	6 cut(s)	70, 138, 180, 263, 326, 926
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	3 cut(s)	622, 647, 649
SduI	GDGCHC	1 cut(s)	755
SfoI	GGCGCC	2 cut(s)	514, 878
Sse9I	AATT	1 cut(s)	237
SspDI	GGCGCC	2 cut(s)	512, 876
SspMI	CTAG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	632, 729
TaaI	ACNGT	1 cut(s)	940
TaiI	ACGT	9 cut(s)	216, 287, 304, 473, 707, 743, 890, 962, 984
TaqI	TCGA	5 cut(s)	69, 137, 222, 614, 933
TaqII	GACCGA	1 cut(s)	632
TasI	AATT	1 cut(s)	237
TauI	GCSGC	5 cut(s)	179, 272, 275, 573, 676
TfiI	GAWTC	6 cut(s)	244, 390, 559, 680, 863, 882
TseFI	GTSAC	1 cut(s)	781
TseI	GCWGC	2 cut(s)	725, 796
Tsp45I	GTSAC	1 cut(s)	781
TspDTI	ATGAA	3 cut(s)	118, 175, 934
TspGWI	ACGGA	1 cut(s)	769
Tth111I	GACNNNGTC	2 cut(s)	841, 983
XapI	RAATTY	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	963
XmiI	GTMKAC	2 cut(s)	308, 426
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	3 cut(s)	285, 302, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.