Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Forward (+)

355563 .. 356583

Gene Structure 1021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGACCGGAGGGCTGAGGAAAATGTCGTCTCCGGCCAACCCACCCAGAAAACCATTGAGGATTTCGATCCCGCACCCAAGCACAAGAGAAACAAGTACGCTTTAGCTTGTGCTATGTTGGCTTTCATGACTTCGATCCTACTCGGTTATGATATTGGTGTAATGAGTGGAGCGGCGATCTTCATCAAAGACGACCTCCATATCTCCGACGTGCAGGTCGAAGTTCTAGTTGGAATTCTGAATCTCTACTCCCTCATCGGATCCGCCGCCGCCGGCAGGACGTCCGACTGGATTGGACGTCGGTATACCATAGTTCTCGCCGGATCTCTTCTCATGGGCTTCGCCACCAACTACTCGTTCCTCATGTTCGGGAGATTTGTTGCTGGAATCGGCGTCGGTTATGCCCTCATGATTGCTCCTGTCTACACCTCCGAAGTTTCTCCAGCGTTGTCTCGTGGTTTCCTCACGTCGTTTGCTGATGTAGGTTTGTTTGTTTGTTTCTGGCTTGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

172

Amino Acids

18.62

Weight (kDa)

6.07

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	39 - 165	5e-21	Sugar (and other) transporter
MFS_1	PF07690	43 - 165	8.8e-11	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	2 cut(s)	287, 304
Acc36I	ACCTGC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	308, 426
AciI	CCGC	5 cut(s)	75, 176, 267, 270, 273
AclWI	GGATC	5 cut(s)	65, 133, 258, 271, 334
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	237
AcyI	GRCGYC	3 cut(s)	284, 301, 396
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	279
AjiI	CACGTC	2 cut(s)	214, 471
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 344, 376
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	37, 459
AlwI	GGATC	5 cut(s)	65, 133, 258, 271, 334
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	456
BbvCI	CCTCAGC	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	37, 459
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	177, 270, 273
BlsI	GCNGC	3 cut(s)	178, 271, 274
BmgBI	CACGTC	2 cut(s)	214, 471
BmiI	GGNNCC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	18
BsaBI	GATNNNNATC	2 cut(s)	69, 185
BsaHI	GRCGYC	3 cut(s)	284, 301, 396
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	296
Bse8I	GATNNNNATC	2 cut(s)	69, 185
BseJI	GATNNNNATC	2 cut(s)	69, 185
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	4 cut(s)	10, 36, 276, 324
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	37, 459
BsmBI	CGTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	39
Bsp143I	GATC	5 cut(s)	70, 138, 180, 263, 326
BspACI	CCGC	5 cut(s)	75, 176, 267, 270, 273
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	1 cut(s)	10
BspHI	TCATGA	2 cut(s)	129, 411
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	5 cut(s)	65, 133, 258, 271, 334
BsrBI	CCGCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	5 cut(s)	70, 138, 180, 263, 326
BssNAI	GTATAC	1 cut(s)	309
BssNI	GRCGYC	3 cut(s)	284, 301, 396
BssSI	CACGAG	1 cut(s)	456
Bst1107I	GTATAC	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	3 cut(s)	284, 301, 396
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	5 cut(s)	73, 141, 183, 266, 329
BstMAI	GTCTC	2 cut(s)	37, 459
BstMBI	GATC	5 cut(s)	70, 138, 180, 263, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	263, 326
BstYI	RGATCY	2 cut(s)	263, 326
BstZ17I	GTATAC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	39
BtrI	CACGTC	2 cut(s)	214, 471
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	277
CciI	TCATGA	2 cut(s)	129, 411
Cfr10I	RCCGGY	1 cut(s)	275
CseI	GACGC	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	4 cut(s)	130, 337, 367, 412
CviJI	RGCY	7 cut(s)	5, 17, 39, 110, 125, 342, 508
CviKI_1	RGCY	7 cut(s)	5, 17, 39, 110, 125, 342, 508
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	5 cut(s)	72, 140, 182, 265, 328
DpnII	GATC	5 cut(s)	70, 138, 180, 263, 326
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	237
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	4 cut(s)	133, 340, 370, 415
FatI	CATG	4 cut(s)	129, 336, 366, 411
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	2 cut(s)	308, 426
Fnu4HI	GCNGC	3 cut(s)	177, 270, 273
Fsp4HI	GCNGC	3 cut(s)	177, 270, 273
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	3 cut(s)	177, 270, 273
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	4 cut(s)	10, 36, 276, 324
HgaI	GACGC	1 cut(s)	385
Hin1I	GRCGYC	3 cut(s)	284, 301, 396
Hin1II	CATG	4 cut(s)	133, 340, 370, 415
HinfI	GANTC	2 cut(s)	244, 390
HpaII	CCGG	4 cut(s)	10, 36, 276, 324
Hpy166II	GTNNAC	2 cut(s)	309, 427
Hpy188I	TCNGA	5 cut(s)	211, 243, 263, 289, 436
Hpy188III	TCNNGA	3 cut(s)	130, 373, 412
Hpy8I	GTNNAC	2 cut(s)	309, 427
Hpy99I	CGWCG	4 cut(s)	215, 306, 401, 475
HpyCH4IV	ACGT	4 cut(s)	213, 284, 301, 470
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	4 cut(s)	213, 284, 301, 470
Hsp92I	GRCGYC	3 cut(s)	284, 301, 396
Hsp92II	CATG	4 cut(s)	133, 340, 370, 415
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	70, 138, 180, 263, 326
LmnI	GCTCC	2 cut(s)	173, 424
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	4 cut(s)	213, 284, 301, 470
MalI	GATC	5 cut(s)	72, 140, 182, 265, 328
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	5 cut(s)	70, 138, 180, 263, 326
MboII	GAAGA	2 cut(s)	175, 323
MflI	RGATCY	2 cut(s)	263, 326
MluCI	AATT	1 cut(s)	237
MmeI	TCCRAC	3 cut(s)	214, 234, 312
MnlI	CCTC	9 cut(s)	6, 13, 55, 209, 266, 374, 419, 442, 476
MroNI	GCCGGC	1 cut(s)	275
MseI	TTAA	1 cut(s)	517
MspI	CCGG	4 cut(s)	10, 36, 276, 324
MwoI	GCNNNNNNNGC	1 cut(s)	122
NaeI	GCCGGC	1 cut(s)	277
NdeII	GATC	5 cut(s)	70, 138, 180, 263, 326
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	133, 340, 370, 415
NlaIV	GGNNCC	1 cut(s)	265
PagI	TCATGA	2 cut(s)	129, 411
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	244, 390
PkrI	GCNGC	3 cut(s)	178, 271, 274
PspN4I	GGNNCC	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	263, 326
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	517
SatI	GCNGC	3 cut(s)	177, 270, 273
Sau3AI	GATC	5 cut(s)	70, 138, 180, 263, 326
SetI	ASST	9 cut(s)	112, 201, 216, 222, 287, 304, 434, 473, 490
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	5 cut(s)	75, 176, 267, 270, 273
SspMI	CTAG	1 cut(s)	230
TaiI	ACGT	4 cut(s)	216, 287, 304, 473
TaqI	TCGA	3 cut(s)	69, 137, 222
TasI	AATT	1 cut(s)	237
TauI	GCSGC	3 cut(s)	179, 272, 275
TfiI	GAWTC	2 cut(s)	244, 390
Tru1I	TTAA	1 cut(s)	517
Tru9I	TTAA	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	118, 175
XapI	RAATTY	1 cut(s)	237
XmiI	GTMKAC	2 cut(s)	308, 426
XspI	CTAG	1 cut(s)	230
ZraI	GACGTC	2 cut(s)	285, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.