Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016413

Physical Location & Seq

Genomic Coordinates Forward (+)

18566655 .. 18568091

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTGACCGGAGAGCTGAGGAAAATGTCGTCTCCGGCCAACCCACCCAGAAAACCATTGCGGATTTCGATCCCGCACCCAAGCCCAAGAGAAACAAGTACGCTTTAGCTTGTGCTATGTTGGCTTCCATGACTTCGATCCTACTCGGTTATGATATTGGTGTAATGAGTGGAGCGGCGATCTTCATCAAAGACGACCTCCATATCTCCGACGTGCAGGTCGAAGTTCTAGTTGGAATTCTAAATCTCTACTCCCTCATCGGATCCGCCGCCGCCGGCAGGACGTCCGACTGGATTGGACGTCGGTATACCATAGTCCTCGCCGGAGCCATCTTCTTTGCCGGTTCTCTTCTCATGGGCTTCGCCACCAACTACTCGTTCCTCATGTTCGGGAGATTTGTTGCTGGAATCGGCGTCGGTTATGCCCTCATGATTGCTCCTGTCTACACCGCCGAAGTTTCTCCGGCGTCGTCTCGTGGTTTCCTCACGTCTTTTGCTGATAGGGTGAATATGCTCGCTCACCCAAGGTCCCAAGGGGTAAACCTGAGAATTGTCCATTATGACCCTTTTACTTGTAATTGTGTTATATCATTTAGTATAAATTTGATGGGGAAATTATTCTGTGGTCCGGGAATACAATGTAATATTGCTATATGGTGGTCTAGACCAATCCAATTATTCGAATTTGGTGGGGACAGGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

234

Amino Acids

25.35

Weight (kDa)

8.62

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	39 - 188	3.2e-27	Sugar (and other) transporter
MFS_1	PF07690	45 - 165	4.8e-15	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016413)

Species	Orthologous Gene IDs
malus_domestica	MD05G1068800.v1.1 MD05G1168300.v1.1
prunus_persica	Prupe.5G027100_v2.0.a1 Prupe.8G101500_v2.0.a1 Prupe.8G101500_v2.0.a1
pyrus_communis	pycom05g05980 pycom10g06260
rosa_chinensis	RchiOBHm_Chr6g0263611 RchiOBHm_Chr6g0263671
rosa_multiflora	Rmu_sc0013458.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431120 Rroxscaffold_7G00204120
rosa_samantha	Rh6AG125100 Rh6BG121100 Rh6CG119400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
AatII	GACGTC	2 cut(s)	287, 304
Acc36I	ACCTGC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	308, 444
AciI	CCGC	7 cut(s)	62, 75, 176, 267, 270, 273, 450
AclWI	GGATC	4 cut(s)	65, 133, 258, 271
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	3 cut(s)	237, 601, 683
AcyI	GRCGYC	4 cut(s)	284, 301, 414, 467
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	279
AjiI	CACGTC	2 cut(s)	214, 489
AjuI	GAANNNNNNNTTGG	4 cut(s)	216, 248, 362, 394
AluBI	AGCT	2 cut(s)	17, 110
AluI	AGCT	2 cut(s)	17, 110
Alw26I	GTCTC	2 cut(s)	37, 477
AlwI	GGATC	4 cut(s)	65, 133, 258, 271
AoxI	GGCC	1 cut(s)	37
ApoI	RAATTY	3 cut(s)	237, 601, 683
Asp700I	GAANNNNTTC	1 cut(s)	617
AspS9I	GGNCC	2 cut(s)	528, 626
AsuC2I	CCSGG	1 cut(s)	630
AsuHPI	GGTGA	2 cut(s)	512, 517
AsuII	TTCGAA	1 cut(s)	681
AvaII	GGWCC	2 cut(s)	528, 626
BamHI	GGATCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	474
BbvCI	CCTCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	338, 601
BcnI	CCSGG	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	37, 477
BfaI	CTAG	2 cut(s)	230, 663
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	3 cut(s)	177, 270, 273
BlsI	GCNGC	3 cut(s)	178, 271, 274
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	2 cut(s)	528, 626
BmgBI	CACGTC	2 cut(s)	214, 489
BmgT120I	GGNCC	2 cut(s)	528, 626
BmiI	GGNNCC	3 cut(s)	265, 328, 530
BmrFI	CCNGG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	681
BpuMI	CCSGG	1 cut(s)	630
BsaBI	GATNNNNATC	2 cut(s)	69, 185
BsaHI	GRCGYC	4 cut(s)	284, 301, 414, 467
BsaJI	CCNNGG	2 cut(s)	524, 532
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse118I	RCCGGY	2 cut(s)	275, 341
Bse1I	ACTGG	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	69, 185
BseDI	CCNNGG	2 cut(s)	524, 532
BseJI	GATNNNNATC	2 cut(s)	69, 185
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	9, 536
BseNI	ACTGG	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	39
BsiSI	CCGG	7 cut(s)	10, 36, 276, 324, 342, 464, 629
BslFI	GGGAC	1 cut(s)	514
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	2 cut(s)	37, 477
BsmBI	CGTCTC	2 cut(s)	37, 477
BsmFI	GGGAC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	681
Bsp143I	GATC	4 cut(s)	70, 138, 180, 263
BspACI	CCGC	7 cut(s)	62, 75, 176, 267, 270, 273, 450
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	10, 537
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	265, 328, 530
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	4 cut(s)	65, 133, 258, 271
BspT104I	TTCGAA	1 cut(s)	681
BsrBI	CCGCTC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	2 cut(s)	275, 341
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	2 cut(s)	275, 341
BssECI	CCNNGG	2 cut(s)	524, 532
BssMI	GATC	4 cut(s)	70, 138, 180, 263
BssNAI	GTATAC	1 cut(s)	309
BssNI	GRCGYC	4 cut(s)	284, 301, 414, 467
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	2 cut(s)	524, 532
Bst1107I	GTATAC	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	474
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	4 cut(s)	284, 301, 414, 467
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	2 cut(s)	277, 516
BstDEI	CTNAG	2 cut(s)	18, 545
BstKTI	GATC	4 cut(s)	73, 141, 183, 266
BstMAI	GTCTC	2 cut(s)	37, 477
BstMBI	GATC	4 cut(s)	70, 138, 180, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BstZ17I	GTATAC	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	39
BtrI	CACGTC	2 cut(s)	214, 489
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	2 cut(s)	277, 516
CciI	TCATGA	1 cut(s)	429
Cfr10I	RCCGGY	2 cut(s)	275, 341
Cfr13I	GGNCC	2 cut(s)	528, 626
CseI	GACGC	2 cut(s)	403, 456
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	4 cut(s)	130, 355, 385, 430
CviJI	RGCY	8 cut(s)	5, 17, 39, 85, 110, 125, 329, 360
CviKI_1	RGCY	8 cut(s)	5, 17, 39, 85, 110, 125, 329, 360
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	18, 545
DpnI	GATC	4 cut(s)	72, 140, 182, 265
DpnII	GATC	4 cut(s)	70, 138, 180, 263
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	524, 532
Eco47I	GGWCC	2 cut(s)	528, 626
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	524, 532
ErhI	CCWWGG	2 cut(s)	524, 532
Esp3I	CGTCTC	2 cut(s)	37, 477
FaeI	CATG	4 cut(s)	133, 358, 388, 433
FaqI	GGGAC	1 cut(s)	514
FatI	CATG	4 cut(s)	129, 354, 384, 429
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	2 cut(s)	308, 444
Fnu4HI	GCNGC	3 cut(s)	177, 270, 273
Fsp4HI	GCNGC	3 cut(s)	177, 270, 273
FspBI	CTAG	2 cut(s)	230, 663
GluI	GCNGC	3 cut(s)	177, 270, 273
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	7 cut(s)	10, 36, 276, 324, 342, 464, 629
HgaI	GACGC	2 cut(s)	403, 456
Hin1I	GRCGYC	4 cut(s)	284, 301, 414, 467
Hin1II	CATG	4 cut(s)	133, 358, 388, 433
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	7 cut(s)	10, 36, 276, 324, 342, 464, 629
HphI	GGTGA	2 cut(s)	512, 517
Hpy166II	GTNNAC	3 cut(s)	309, 445, 541
Hpy188I	TCNGA	3 cut(s)	211, 263, 289
Hpy188III	TCNNGA	3 cut(s)	391, 430, 663
Hpy8I	GTNNAC	3 cut(s)	309, 445, 541
Hpy99I	CGWCG	4 cut(s)	215, 306, 419, 472
HpyCH4IV	ACGT	4 cut(s)	213, 284, 301, 488
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	2 cut(s)	18, 545
HpySE526I	ACGT	4 cut(s)	213, 284, 301, 488
Hsp92I	GRCGYC	4 cut(s)	284, 301, 414, 467
Hsp92II	CATG	4 cut(s)	133, 358, 388, 433
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	70, 138, 180, 263
LmnI	GCTCC	3 cut(s)	173, 326, 442
MaeI	CTAG	2 cut(s)	230, 663
MaeII	ACGT	4 cut(s)	213, 284, 301, 488
MalI	GATC	4 cut(s)	72, 140, 182, 265
MbiI	CCGCTC	1 cut(s)	176
MboI	GATC	4 cut(s)	70, 138, 180, 263
MboII	GAAGA	3 cut(s)	175, 325, 341
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	7 cut(s)	237, 549, 577, 601, 614, 674, 683
MmeI	TCCRAC	3 cut(s)	214, 234, 312
MnlI	CCTC	7 cut(s)	13, 209, 266, 329, 392, 437, 494
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	617
MspI	CCGG	7 cut(s)	10, 36, 276, 324, 342, 464, 629
MspR9I	CCNGG	1 cut(s)	630
MwoI	GCNNNNNNNGC	1 cut(s)	122
NaeI	GCCGGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	630
NdeII	GATC	4 cut(s)	70, 138, 180, 263
NgoMIV	GCCGGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	133, 358, 388, 433
NlaIV	GGNNCC	3 cut(s)	265, 328, 530
NspV	TTCGAA	1 cut(s)	681
PagI	TCATGA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	408
PfoI	TCCNGGA	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	178, 271, 274
PpuMI	RGGWCCY	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	528
PspN4I	GGNNCC	3 cut(s)	265, 328, 530
PspPI	GGNCC	2 cut(s)	528, 626
PspPPI	RGGWCCY	1 cut(s)	528
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	3 cut(s)	177, 270, 273
Sau3AI	GATC	4 cut(s)	70, 138, 180, 263
Sau96I	GGNCC	2 cut(s)	528, 626
ScrFI	CCNGG	1 cut(s)	630
SfuI	TTCGAA	1 cut(s)	681
SinI	GGWCC	2 cut(s)	528, 626
Sse9I	AATT	7 cut(s)	237, 549, 577, 601, 614, 674, 683
SsiI	CCGC	7 cut(s)	62, 75, 176, 267, 270, 273, 450
SspI	AATATT	1 cut(s)	646
SspMI	CTAG	2 cut(s)	230, 663
StyD4I	CCNGG	1 cut(s)	628
StyI	CCWWGG	2 cut(s)	524, 532
TaiI	ACGT	4 cut(s)	216, 287, 304, 491
TaqI	TCGA	4 cut(s)	69, 137, 222, 681
TasI	AATT	7 cut(s)	237, 549, 577, 601, 614, 674, 683
TauI	GCSGC	3 cut(s)	179, 272, 275
TfiI	GAWTC	1 cut(s)	408
TspDTI	ATGAA	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	528, 626
XapI	RAATTY	3 cut(s)	237, 601, 683
XbaI	TCTAGA	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	308, 444
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	2 cut(s)	230, 663
ZraI	GACGTC	2 cut(s)	285, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.