Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005363

Physical Location & Seq

Genomic Coordinates Reverse (-)

30415209 .. 30418054

Gene Structure 2846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1176900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTATTCGACTCTAAAACAAGCAAAAGTAGTTTCCCTTGTCCGCACGGGAAGGGCTTCTATGGGATTAATCTTTGGTTTTCACAAAATTGACCTTACTGAGTTCTTCTTAGAAAGTTGCTGTTTTGGGTTTTCATTCTTTGTGTGTCATATTGGTTCCTCCCCAGGTTTTGAGGATGGAAACTTTGAATGTGCCAAGTTGGCACGCCCTGCAGCTTCATTTTATGATGCCGCTGAGGATTGCCTATATTTTGTTGATTCAGAGAATCATGCCATAAGGAAAGCTGATATGGAGAGCCGGGTTCTGGAAACCCTCTATCCAGTGGGAGACACTGCTAAGAAGAGTAATCAACTTTGTACCTGGATCACAACCAAGCTAGTTTTGAGAAGCAATGCCCATACAAGGACTGAAGGATTTGATTTACAATCATTGATGTATCCTTGGCATCTGATGAAATCTATTGATGACAGTCTCGATGTTATGAACCGAAGCTTTAATACTCTGTGGATCCTAAATTTGGCTTCAGGAGAGATAAAAGAAGTCATCAGAGGGTTCCCCAAGATTTTGGAGGTCTGTGGACAGCAGGTCATGGAAAAAGTAGCGCTGTTGAAACAGATGCCACATGATTGGTTGCAGCAACAAACCAATGTTATTTGTTCACCAGAGCAGCTCCCATATGCTGGCCTACTATCTTCATTGACCACCTTGCAGAATCACGTAATCCTTTGTGATATGGGGAATCTGGAGTACGTTCAACCTTCCGGTTATCAAAATTTTGGAATTCTTGGACTGCCGTATTGGTTGCCTTCCTCATTGGAGAAAGTATATACTACTGGTAGTGGAGTTCATGGAGTGATTGATCATCTTGAATCTTTTAGAAGAGTTTTGATACAGTTAAATGTGGAGGTTCTTGAAGATACCGAGCTTGTAGAACGGTTGCAAGAAGGCTGTATATGGCGCCAGACAAGAGGAGCCGCTACCGAAGTGTCATGGGTCGGTGTTGCTCAACAATGGTACGATGAACTGGACAATCTTGCTTGTCGATATCAGAACCTGATACTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

356

Amino Acids

40.22

Weight (kDa)

5.24

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07060
fragaria_vesca	FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201
malus_domestica	MD05G1176900.v1.1 MD05G1177000.v1.1 MD10G1165500.v1.1
prunus_persica	Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1
pyrus_communis	pycom10g14280
rosa_chinensis	RchiOBHm_Chr6g0284991
rosa_laevigata	RLG00000012692
rosa_multiflora	Rmu_sc0006185.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183860 Rroxscaffold_7G00184140
rosa_rugosa	Rorug06G0169500
rosa_samantha	Rh5DG284300 Rh6AG281300 Rh6BG282000 Rh6CG283700 Rh6DG276800 Rh7DG366800
rosa_wichuraiana	Rw6G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	957
AccB7I	CCANNNNNTGG	1 cut(s)	680
AciI	CCGC	3 cut(s)	43, 231, 975
AclWI	GGATC	3 cut(s)	371, 502, 515
AcsI	RAATTY	3 cut(s)	514, 772, 780
AcuI	CTGAAG	2 cut(s)	429, 507
AcyI	GRCGYC	1 cut(s)	958
AfaI	GTAC	3 cut(s)	358, 749, 1016
AfeI	AGCGCT	1 cut(s)	603
AfiI	CCNNNNNNNGG	4 cut(s)	304, 402, 517, 680
AgsI	TTSAA	5 cut(s)	188, 610, 755, 869, 914
AhdI	GACNNNNNGTC	1 cut(s)	584
AjnI	CCWGG	2 cut(s)	163, 359
AluBI	AGCT	6 cut(s)	215, 284, 376, 492, 670, 925
AluI	AGCT	6 cut(s)	215, 284, 376, 492, 670, 925
Alw26I	GTCTC	2 cut(s)	321, 476
AlwI	GGATC	3 cut(s)	371, 502, 515
AlwNI	CAGNNNCTG	1 cut(s)	1054
Aor51HI	AGCGCT	1 cut(s)	603
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	3 cut(s)	212, 634, 667
ApoI	RAATTY	3 cut(s)	514, 772, 780
AseI	ATTAAT	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	604, 960
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	957
BarI	GAAGNNNNNNTAC	2 cut(s)	481, 513
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	224, 646, 679
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	778
BciT130I	CCWGG	2 cut(s)	165, 361
BciVI	GTATCC	1 cut(s)	447
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	2 cut(s)	321, 476
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	2 cut(s)	605, 961
BfuAI	ACCTGC	1 cut(s)	574
BfuI	GTATCC	1 cut(s)	447
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	5 cut(s)	213, 231, 635, 668, 975
BlsI	GCNGC	5 cut(s)	214, 232, 636, 669, 976
Bme1390I	CCNGG	3 cut(s)	165, 299, 361
BmeRI	GACNNNNNGTC	1 cut(s)	584
BmiI	GGNNCC	5 cut(s)	157, 509, 554, 959, 973
BmrFI	CCNGG	3 cut(s)	165, 299, 361
BmsI	GCATC	3 cut(s)	217, 454, 606
BpmI	CTGGAG	1 cut(s)	764
Bpu10I	CCTNAGC	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	299
BsaAI	YACGTR	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	958
BsaJI	CCNNGG	2 cut(s)	163, 440
BsaWI	WCCGGW	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 402, 517, 680
Bse1I	ACTGG	3 cut(s)	320, 838, 1029
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	165, 361
BseDI	CCNNGG	2 cut(s)	163, 440
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	4 cut(s)	304, 402, 517, 680
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	90, 225, 1052
BseNI	ACTGG	3 cut(s)	320, 838, 1029
BseRI	GAGGAG	1 cut(s)	984
BseXI	GCAGC	3 cut(s)	224, 646, 679
BshFI	GGCC	1 cut(s)	684
BshNI	GGYRCC	1 cut(s)	957
BsiSI	CCGG	2 cut(s)	298, 762
BslI	CCNNNNNNNGG	4 cut(s)	304, 402, 517, 680
BsmAI	GTCTC	2 cut(s)	321, 476
BsnI	GGCC	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	363, 507, 859
BspACI	CCGC	3 cut(s)	43, 231, 975
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	3 cut(s)	91, 226, 1053
BspLI	GGNNCC	5 cut(s)	157, 509, 554, 959, 973
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	3 cut(s)	371, 502, 515
BspT107I	GGYRCC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	3 cut(s)	320, 838, 1029
BssECI	CCNNGG	2 cut(s)	163, 440
BssMI	GATC	3 cut(s)	363, 507, 859
BssNI	GRCGYC	1 cut(s)	958
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	2 cut(s)	165, 361
Bst4CI	ACNGT	3 cut(s)	470, 894, 936
Bst6I	CTCTTC	2 cut(s)	335, 874
BstACI	GRCGYC	1 cut(s)	958
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	205, 682
BstDEI	CTNAG	5 cut(s)	99, 109, 234, 336, 1061
BstF5I	GGATG	1 cut(s)	181
BstH2I	RGCGCY	2 cut(s)	605, 961
BstHHI	GCGC	2 cut(s)	604, 960
BstKTI	GATC	3 cut(s)	366, 510, 862
BstMAI	GTCTC	2 cut(s)	321, 476
BstMBI	GATC	3 cut(s)	363, 507, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 209
BstNI	CCWGG	2 cut(s)	165, 361
BstSCI	CCNGG	3 cut(s)	163, 297, 359
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	224, 646, 679
BstX2I	RGATCY	1 cut(s)	507
BstXI	CCANNNNNNTGG	2 cut(s)	565, 627
BstYI	RGATCY	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	181
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	327, 330
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	205, 682
CaiI	CAGNNNCTG	1 cut(s)	1054
CfoI	GCGC	2 cut(s)	604, 960
Csp6I	GTAC	3 cut(s)	357, 748, 1015
CviAII	CATG	5 cut(s)	269, 589, 623, 848, 990
CviQI	GTAC	3 cut(s)	357, 748, 1015
DdeI	CTNAG	5 cut(s)	99, 109, 234, 336, 1061
DinI	GGCGCC	1 cut(s)	959
DpnI	GATC	3 cut(s)	365, 509, 861
DpnII	GATC	3 cut(s)	363, 507, 859
DriI	GACNNNNNGTC	1 cut(s)	584
Eam1104I	CTCTTC	2 cut(s)	335, 874
Eam1105I	GACNNNNNGTC	1 cut(s)	584
EarI	CTCTTC	2 cut(s)	335, 874
Eco130I	CCWWGG	1 cut(s)	440
Eco32I	GATATC	1 cut(s)	1046
Eco47III	AGCGCT	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	429, 507
EcoRI	GAATTC	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	163, 359
EcoRV	GATATC	1 cut(s)	1046
EcoT14I	CCWWGG	1 cut(s)	440
EgeI	GGCGCC	1 cut(s)	959
EheI	GGCGCC	1 cut(s)	959
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	5 cut(s)	272, 592, 626, 851, 993
FatI	CATG	5 cut(s)	268, 588, 622, 847, 989
FauNDI	CATATG	1 cut(s)	676
FbaI	TGATCA	1 cut(s)	859
Fnu4HI	GCNGC	5 cut(s)	213, 231, 635, 668, 975
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	5 cut(s)	213, 231, 635, 668, 975
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	2 cut(s)	603, 959
GluI	GCNGC	5 cut(s)	213, 231, 635, 668, 975
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	2 cut(s)	605, 961
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	298, 762
HhaI	GCGC	2 cut(s)	604, 960
Hin1I	GRCGYC	1 cut(s)	958
Hin1II	CATG	5 cut(s)	272, 592, 626, 851, 993
Hin6I	GCGC	2 cut(s)	602, 958
HinP1I	GCGC	2 cut(s)	602, 958
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	6 cut(s)	10, 257, 265, 712, 739, 869
HpaII	CCGG	2 cut(s)	298, 762
HphI	GGTGA	1 cut(s)	651
Hpy166II	GTNNAC	2 cut(s)	578, 659
Hpy188I	TCNGA	4 cut(s)	262, 450, 548, 1050
Hpy188III	TCNNGA	6 cut(s)	305, 473, 525, 743, 866, 911
Hpy8I	GTNNAC	2 cut(s)	578, 659
HpyAV	CCTTC	5 cut(s)	45, 404, 768, 816, 938
HpyCH4III	ACNGT	3 cut(s)	470, 894, 936
HpyCH4IV	ACGT	2 cut(s)	717, 750
HpyCH4V	TGCA	4 cut(s)	212, 634, 709, 940
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 209
HpyF3I	CTNAG	5 cut(s)	99, 109, 234, 336, 1061
HpySE526I	ACGT	2 cut(s)	717, 750
Hsp92I	GRCGYC	1 cut(s)	958
Hsp92II	CATG	5 cut(s)	272, 592, 626, 851, 993
HspAI	GCGC	2 cut(s)	602, 958
KasI	GGCGCC	1 cut(s)	957
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	3 cut(s)	363, 507, 859
LmnI	GCTCC	2 cut(s)	675, 971
Lsp1109I	GCAGC	3 cut(s)	224, 646, 679
LweI	GCATC	3 cut(s)	217, 454, 606
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	2 cut(s)	717, 750
MalI	GATC	3 cut(s)	365, 509, 861
MboI	GATC	3 cut(s)	363, 507, 859
MboII	GAAGA	5 cut(s)	97, 352, 684, 891, 926
MflI	RGATCY	1 cut(s)	507
MluCI	AATT	4 cut(s)	87, 514, 772, 780
Mly113I	GGCGCC	1 cut(s)	958
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	9 cut(s)	166, 169, 229, 323, 542, 562, 820, 898, 962
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	3 cut(s)	68, 495, 896
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	298, 762
MspR9I	CCNGG	3 cut(s)	165, 299, 361
MvaI	CCWGG	2 cut(s)	165, 361
MwoI	GCNNNNNNNGC	2 cut(s)	200, 209
NarI	GGCGCC	1 cut(s)	958
NciI	CCSGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	3 cut(s)	363, 507, 859
NlaIII	CATG	5 cut(s)	272, 592, 626, 851, 993
NlaIV	GGNNCC	5 cut(s)	157, 509, 554, 959, 973
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	5 cut(s)	257, 265, 712, 739, 869
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	5 cut(s)	214, 232, 636, 669, 976
PleI	GAGTC	1 cut(s)	4
PluTI	GGCGCC	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	4
Ppu21I	YACGTR	1 cut(s)	718
PshBI	ATTAAT	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	163, 359
PspGI	CCWGG	2 cut(s)	163, 359
PspN4I	GGNNCC	5 cut(s)	157, 509, 554, 959, 973
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	1054
PsuI	RGATCY	1 cut(s)	507
RsaI	GTAC	3 cut(s)	358, 749, 1016
RsaNI	GTAC	3 cut(s)	357, 748, 1015
SaqAI	TTAA	3 cut(s)	68, 495, 896
SatI	GCNGC	5 cut(s)	213, 231, 635, 668, 975
Sau3AI	GATC	3 cut(s)	363, 507, 859
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	165, 299, 361
SfaNI	GCATC	3 cut(s)	217, 454, 606
SfcI	CTRYAG	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	959
Sse9I	AATT	4 cut(s)	87, 514, 772, 780
SsiI	CCGC	3 cut(s)	43, 231, 975
SspDI	GGCGCC	1 cut(s)	957
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	3 cut(s)	163, 297, 359
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	3 cut(s)	470, 894, 936
TaiI	ACGT	2 cut(s)	720, 753
TaqI	TCGA	3 cut(s)	8, 474, 1042
TasI	AATT	4 cut(s)	87, 514, 772, 780
TauI	GCSGC	2 cut(s)	233, 977
TfiI	GAWTC	5 cut(s)	257, 265, 712, 739, 869
Tru1I	TTAA	3 cut(s)	68, 495, 896
Tru9I	TTAA	3 cut(s)	68, 495, 896
TscAI	CASTG	2 cut(s)	327, 337
TseI	GCWGC	3 cut(s)	212, 634, 667
TspDTI	ATGAA	7 cut(s)	123, 207, 467, 497, 684, 836, 1035
TspRI	CASTG	2 cut(s)	327, 337
Van91I	CCANNNNNTGG	1 cut(s)	680
VspI	ATTAAT	1 cut(s)	68
XapI	RAATTY	3 cut(s)	514, 772, 780
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.