Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005363

Physical Location & Seq

Genomic Coordinates Reverse (-)

30418056 .. 30420291

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1177000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTAGAAAAGGTGAAGTTTCCTCAGCTCCACATTATGGGCTTTGTGTCAGGTGGCTCGATTCACTCAGCTGCTGATCGAAGCCATCTGATCCAATATATACTGAAGGAATACATCACATTTCCTATTATATTGTCGAACAAGAACTTCACTGAGATGGAAAACGGGGCATGCTGCATTTTGTTTAAAGGTTTTAAAAGTCCAGTGGTTTACCATGAGAAGGATATGGATCTCAGAGTTCTCAATAAAGCTGTTGAGGACTTGCTTGTGCAAGATGATGGGAGTTCCAGGTCGCGCACTAACTTGAAAAGCACTTGGACAAAGCAACCTGAAATCATTAAAGAGTCATATGGCGATTCTTTAAGGAATCTTCTCTTCTACTTACCAGGCTGCATCTCTGCAGATGAATGTGGGAACCGGCTCTTCCTTTCTGACAGCAATCATCATTGGATTATTGTAGTTGATGGAAATGGTCATATTCTGGACTGTGTATATATTAAATTATATGTGGACTGCTCTTCTAAATTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

178

Amino Acids

20.13

Weight (kDa)

6.37

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07060
fragaria_vesca	FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201
malus_domestica	MD05G1176900.v1.1 MD05G1177000.v1.1 MD10G1165500.v1.1
prunus_persica	Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1
pyrus_communis	pycom10g14280
rosa_chinensis	RchiOBHm_Chr6g0284991
rosa_laevigata	RLG00000012692
rosa_multiflora	Rmu_sc0006185.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183860 Rroxscaffold_7G00184140
rosa_rugosa	Rorug06G0169500
rosa_samantha	Rh5DG284300 Rh6AG281300 Rh6BG282000 Rh6CG283700 Rh6DG276800 Rh7DG366800
rosa_wichuraiana	Rw6G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccII	CGCG	1 cut(s)	295
AclWI	GGATC	2 cut(s)	85, 237
AcsI	RAATTY	1 cut(s)	524
AcuI	CTGAAG	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	37, 220
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	2 cut(s)	287, 385
AluBI	AGCT	3 cut(s)	28, 71, 251
AluI	AGCT	3 cut(s)	28, 71, 251
AlwI	GGATC	2 cut(s)	85, 237
AlwNI	CAGNNNCTG	1 cut(s)	74
ApeKI	GCWGC	3 cut(s)	71, 174, 390
ApoI	RAATTY	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	58, 161, 377
BccI	CCATC	4 cut(s)	93, 151, 272, 458
BciT130I	CCWGG	2 cut(s)	289, 387
BfmI	CTRYAG	1 cut(s)	399
BisI	GCNGC	3 cut(s)	72, 175, 391
BlsI	GCNGC	3 cut(s)	73, 176, 392
Bme1390I	CCNGG	2 cut(s)	289, 387
BmiI	GGNNCC	1 cut(s)	416
BmrFI	CCNGG	2 cut(s)	289, 387
BmsI	GCATC	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 220
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	2 cut(s)	289, 387
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	2 cut(s)	37, 220
BseMII	CTCAG	4 cut(s)	38, 81, 144, 247
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	58, 161, 377
Bsh1236I	CGCG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	2 cut(s)	37, 220
Bsp143I	GATC	3 cut(s)	76, 90, 229
BspCNI	CTCAG	4 cut(s)	37, 80, 145, 246
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	416
BspMAI	CTGCAG	1 cut(s)	403
BspPI	GGATC	2 cut(s)	85, 237
BspQI	GCTCTTC	2 cut(s)	428, 523
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	417
BssMI	GATC	3 cut(s)	76, 90, 229
Bst2UI	CCWGG	2 cut(s)	289, 387
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	3 cut(s)	380, 428, 523
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	5 cut(s)	24, 67, 153, 233, 531
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	3 cut(s)	79, 93, 232
BstMBI	GATC	3 cut(s)	76, 90, 229
BstNI	CCWGG	2 cut(s)	289, 387
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	287, 385
BstSFI	CTRYAG	1 cut(s)	399
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	58, 161, 377
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	150, 210
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	417
CviAII	CATG	2 cut(s)	171, 215
CviJI	RGCY	8 cut(s)	28, 42, 57, 71, 84, 251, 390, 421
CviKI_1	RGCY	8 cut(s)	28, 42, 57, 71, 84, 251, 390, 421
DdeI	CTNAG	5 cut(s)	24, 67, 153, 233, 531
DpnI	GATC	3 cut(s)	78, 92, 231
DpnII	GATC	3 cut(s)	76, 90, 229
DraI	TTTAAA	2 cut(s)	187, 196
Eam1104I	CTCTTC	3 cut(s)	380, 428, 523
EarI	CTCTTC	3 cut(s)	380, 428, 523
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	287, 385
FaeI	CATG	2 cut(s)	174, 218
FatI	CATG	2 cut(s)	170, 214
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	72, 175, 391
Fsp4HI	GCNGC	3 cut(s)	72, 175, 391
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	3 cut(s)	72, 175, 391
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	174, 218
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	61, 344, 356, 367
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	211, 511
Hpy188I	TCNGA	3 cut(s)	90, 236, 433
Hpy188III	TCNNGA	1 cut(s)	482
Hpy8I	GTNNAC	2 cut(s)	211, 511
HpyAV	CCTTC	2 cut(s)	100, 214
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	4 cut(s)	177, 271, 393, 401
HpyF3I	CTNAG	5 cut(s)	24, 67, 153, 233, 531
Hsp92II	CATG	2 cut(s)	174, 218
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	76, 90, 229
LguI	GCTCTTC	2 cut(s)	428, 523
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	9 cut(s)	36, 216, 274, 301, 342, 372, 399, 431, 467
Lsp1109I	GCAGC	3 cut(s)	58, 161, 377
LweI	GCATC	1 cut(s)	402
MalI	GATC	3 cut(s)	78, 92, 231
MboI	GATC	3 cut(s)	76, 90, 229
MboII	GAAGA	4 cut(s)	362, 367, 415, 510
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	2 cut(s)	500, 524
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	33, 250
MseI	TTAA	5 cut(s)	186, 195, 339, 362, 498
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	289, 387
MvaI	CCWGG	2 cut(s)	289, 387
MvnI	CGCG	1 cut(s)	295
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	3 cut(s)	76, 90, 229
NlaIII	CATG	2 cut(s)	174, 218
NlaIV	GGNNCC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	174
PciSI	GCTCTTC	2 cut(s)	428, 523
PfeI	GAWTC	3 cut(s)	61, 356, 367
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	73, 176, 392
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	287, 385
PspGI	CCWGG	2 cut(s)	287, 385
PspN4I	GGNNCC	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	2 cut(s)	428, 523
SaqAI	TTAA	5 cut(s)	186, 195, 339, 362, 498
SatI	GCNGC	3 cut(s)	72, 175, 391
Sau3AI	GATC	3 cut(s)	76, 90, 229
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	289, 387
SetI	ASST	8 cut(s)	15, 30, 55, 73, 193, 253, 293, 331
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	2 cut(s)	500, 524
StyD4I	CCNGG	2 cut(s)	287, 385
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	59, 79, 137
TasI	AATT	2 cut(s)	500, 524
TfiI	GAWTC	3 cut(s)	61, 356, 367
Tru1I	TTAA	5 cut(s)	186, 195, 339, 362, 498
Tru9I	TTAA	5 cut(s)	186, 195, 339, 362, 498
TscAI	CASTG	2 cut(s)	157, 210
TseI	GCWGC	3 cut(s)	71, 174, 390
TspDTI	ATGAA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	157, 210
Van91I	CCANNNNNTGG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	524
XceI	RCATGY	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.