Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006185.1

Orthogroup ID

OG0005363

Physical Location & Seq

Genomic Coordinates Reverse (-)

38020 .. 44426

Gene Structure 6407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006185.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

atggacaatggggcctgctacattttattcaaagattttgaaagtccagtgtttttccatgagaaggaccttgatctcagaattcttaacaaagctgttgaggaatttcatgtgcgagatgatgggagagccaggtccagagataacttgaaaagcacttgggtgaagcaatttgagattatcaaggagccatatgtctatgctgtgaggaatttactctttaacttcccagggtgtgtctctgcagatgaaagtgggaaccgtctcttcctttctgacagcagccaccatcggattattgtatttgatggaaacggaaacattctggactgtattggttcctccccaggtttcgaagatggaaactttgaatctgccaagatggtgcgccctgcatcctcactttatgatgctgctgaggattccctatattttgttgattcagagaatcatgccatcaggaaagctgatttgggtaaacggatcatggagaaagtatccctgttgaaacagatgccacatgattggttgcaacagcagactaatgctgtctgttcaccaaagaggctcccatatgctagtcttatatcttcattgacgaccttgcagaatcacgttatcctttgtgacatggttggacagcagattttgaaactaagtgaagaatctggagtatgttcggcgttccaattttcgaattttggaatccttggattgccgtattggctggcttcctccttggagagagtttatgcagcggttggtgggcatcaaaaagagattgatcatcaggaatgtttcagtttgttaccaggcagaattggtatacaattaaatgttgaaatccctgtgggtactgagcttgtagaacagttacaagagggttgtatatggcgccaggcaaggggtgctgccactgaagtattaggggcagagtatgcaggaggatcttcagagaaggttggtgctgcccaacaatggtatgatgaattggataatcttgcattttcactatcaacacctgaatcagagttgaatgttgaagatgattgtacaacttccgatataggatttcaagatgagagagttcacggaattggtatacaattaaatgttgaaatccctgtgggtactgagcttgtagaacagttacaagagggttgtatatggcgccaggcaaggggtgctgccactgaagtattaggggcagagtatgcaggaggatcttcagagaaggttggtgctgcccaacaatggtatgatgaattggataatcttgcattttcactatcaacacctgaatcagagttgaatgttgaagatgattgtacaacttccgatataggatttcaagatgagagagttcacattgattgtgctgtcaatacaagtcctggtacaagtgaggtcattgtttatgcagcattgtatttaaaacttcgaaagcaagaattattagaggatgatcaggagaaatgtgcagcaaggatagcagatattttgaactcggataggagtggaaagatgggaagagattcattcatccaattcttgttaaactcaaacagagatttgagagacctcatcttcatgaaacctctccatgtgagggtgaaattggattgccttgatcacccaaaggcagctaatggaaaagacattatcctaacagactccaacattgaggtcaatgtattgctcagctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

569

Amino Acids

63.28

Weight (kDa)

4.67

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07060
fragaria_vesca	FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201
malus_domestica	MD05G1176900.v1.1 MD05G1177000.v1.1 MD10G1165500.v1.1
prunus_persica	Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1
pyrus_communis	pycom10g14280
rosa_chinensis	RchiOBHm_Chr6g0284991
rosa_laevigata	RLG00000012692
rosa_multiflora	Rmu_sc0006185.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183860 Rroxscaffold_7G00184140
rosa_rugosa	Rorug06G0169500
rosa_samantha	Rh5DG284300 Rh6AG281300 Rh6BG282000 Rh6CG283700 Rh6DG276800 Rh7DG366800
rosa_wichuraiana	Rw6G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	894, 1170
AccI	GTMKAC	2 cut(s)	826, 1102
AciI	CCGC	1 cut(s)	758
AclWI	GGATC	3 cut(s)	491, 955, 1231
AcsI	RAATTY	4 cut(s)	81, 104, 211, 697
AcuI	CTGAAG	4 cut(s)	936, 939, 1212, 1215
AcyI	GRCGYC	2 cut(s)	895, 1171
AfaI	GTAC	5 cut(s)	856, 1054, 1132, 1330, 1399
AfiI	CCNNNNNNNGG	6 cut(s)	64, 904, 978, 1180, 1254, 1609
AjnI	CCWGG	7 cut(s)	131, 229, 346, 811, 897, 1173, 1393
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	6 cut(s)	95, 467, 862, 1138, 1646, 1704
AluI	AGCT	6 cut(s)	95, 467, 862, 1138, 1646, 1704
Alw26I	GTCTC	3 cut(s)	244, 269, 1572
AlwI	GGATC	3 cut(s)	491, 955, 1231
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	4 cut(s)	81, 104, 211, 697
Asp700I	GAANNNNTTC	1 cut(s)	1534
AspLEI	GCGC	3 cut(s)	390, 897, 1173
AspS9I	GGNCC	3 cut(s)	12, 67, 135
AsuHPI	GGTGA	4 cut(s)	175, 549, 1624, 1625
AsuII	TTCGAA	3 cut(s)	354, 695, 1441
AvaII	GGWCC	2 cut(s)	67, 135
BanI	GGYRCC	2 cut(s)	894, 1170
BbvCI	CCTCAGC	1 cut(s)	417
BccI	CCATC	7 cut(s)	116, 297, 302, 353, 376, 464, 1519
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	3 cut(s)	784, 1465, 1630
BcoDI	GTCTC	3 cut(s)	244, 269, 1572
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	2 cut(s)	898, 1174
BfuI	GTATCC	1 cut(s)	508
BglI	GCCNNNNNGGC	1 cut(s)	724
BlpI	GCTNAGC	1 cut(s)	1700
Bme1390I	CCNGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
Bme18I	GGWCC	2 cut(s)	67, 135
BmgT120I	GGNCC	3 cut(s)	12, 67, 135
BmiI	GGNNCC	7 cut(s)	13, 189, 260, 340, 569, 896, 1172
BmrFI	CCNGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
BmsI	GCATC	4 cut(s)	400, 404, 504, 778
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	1700
Bpu14I	TTCGAA	3 cut(s)	354, 695, 1441
BsaHI	GRCGYC	2 cut(s)	895, 1171
BsaI	GGTCTC	1 cut(s)	1572
BsaJI	CCNNGG	5 cut(s)	229, 230, 346, 709, 738
Bsc4I	CCNNNNNNNGG	6 cut(s)	64, 904, 978, 1180, 1254, 1609
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
BseDI	CCNNGG	5 cut(s)	229, 230, 346, 709, 738
BseGI	GGATG	3 cut(s)	395, 1468, 1542
BseLI	CCNNNNNNNGG	6 cut(s)	64, 904, 978, 1180, 1254, 1609
BseMII	CTCAG	4 cut(s)	91, 408, 849, 1125
BseNI	ACTGG	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	1500
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	2 cut(s)	894, 1170
BslI	CCNNNNNNNGG	6 cut(s)	64, 904, 978, 1180, 1254, 1609
BsmAI	GTCTC	3 cut(s)	244, 269, 1572
BsmBI	CGTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	1572
Bsp119I	TTCGAA	3 cut(s)	354, 695, 1441
Bsp1407I	TGTACA	2 cut(s)	1052, 1328
Bsp143I	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
Bsp1720I	GCTNAGC	1 cut(s)	1700
BspACI	CCGC	1 cut(s)	758
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	4 cut(s)	90, 409, 850, 1126
BspHI	TCATGA	1 cut(s)	1590
BspLI	GGNNCC	7 cut(s)	13, 189, 260, 340, 569, 896, 1172
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	491, 955, 1231
BspT104I	TTCGAA	3 cut(s)	354, 695, 1441
BspT107I	GGYRCC	2 cut(s)	894, 1170
BspTNI	GGTCTC	1 cut(s)	1572
BsrGI	TGTACA	2 cut(s)	1052, 1328
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	5 cut(s)	229, 230, 346, 709, 738
BssMI	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
BssNAI	GTATAC	2 cut(s)	827, 1103
BssNI	GRCGYC	2 cut(s)	895, 1171
BssT1I	CCWWGG	2 cut(s)	709, 738
Bst1107I	GTATAC	2 cut(s)	827, 1103
Bst2UI	CCWGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
Bst4CI	ACNGT	4 cut(s)	263, 332, 873, 1149
Bst6I	CTCTTC	2 cut(s)	272, 1525
BstACI	GRCGYC	2 cut(s)	895, 1171
BstAPI	GCANNNNNTGC	4 cut(s)	908, 938, 1184, 1214
BstAUI	TGTACA	2 cut(s)	1052, 1328
BstBI	TTCGAA	3 cut(s)	354, 695, 1441
BstC8I	GCNNGC	2 cut(s)	16, 729
BstDEI	CTNAG	6 cut(s)	77, 417, 656, 858, 1134, 1700
BstF5I	GGATG	3 cut(s)	395, 1468, 1542
BstH2I	RGCGCY	2 cut(s)	898, 1174
BstHHI	GCGC	3 cut(s)	390, 897, 1173
BstKTI	GATC	7 cut(s)	76, 486, 787, 950, 1226, 1468, 1633
BstMAI	GTCTC	3 cut(s)	244, 269, 1572
BstMBI	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
BstMWI	GCNNNNNNNGC	6 cut(s)	724, 908, 938, 1184, 1214, 1490
BstNI	CCWGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
BstSCI	CCNGG	7 cut(s)	131, 229, 346, 811, 897, 1173, 1393
BstSFI	CTRYAG	1 cut(s)	243
BstX2I	RGATCY	2 cut(s)	947, 1223
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstYI	RGATCY	2 cut(s)	947, 1223
BstZ17I	GTATAC	2 cut(s)	827, 1103
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	395, 1468, 1542
BtsIMutI	CAGTG	3 cut(s)	54, 915, 1191
Cac8I	GCNNGC	2 cut(s)	16, 729
CciI	TCATGA	1 cut(s)	1590
CfoI	GCGC	3 cut(s)	390, 897, 1173
Cfr13I	GGNCC	3 cut(s)	12, 67, 135
Csp6I	GTAC	5 cut(s)	855, 1053, 1131, 1329, 1398
CviAII	CATG	8 cut(s)	59, 110, 452, 487, 521, 631, 1591, 1604
CviQI	GTAC	5 cut(s)	855, 1053, 1131, 1329, 1398
DdeI	CTNAG	6 cut(s)	77, 417, 656, 858, 1134, 1700
DinI	GGCGCC	2 cut(s)	896, 1172
DpnI	GATC	7 cut(s)	75, 485, 786, 949, 1225, 1467, 1632
DpnII	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
DraI	TTTAAA	1 cut(s)	1434
Eam1104I	CTCTTC	2 cut(s)	272, 1525
EarI	CTCTTC	2 cut(s)	272, 1525
Eco130I	CCWWGG	2 cut(s)	709, 738
Eco31I	GGTCTC	1 cut(s)	1572
Eco47I	GGWCC	2 cut(s)	67, 135
Eco57I	CTGAAG	4 cut(s)	936, 939, 1212, 1215
EcoO109I	RGGNCCY	2 cut(s)	12, 67
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	7 cut(s)	131, 229, 346, 811, 897, 1173, 1393
EcoT14I	CCWWGG	2 cut(s)	709, 738
EgeI	GGCGCC	2 cut(s)	896, 1172
EheI	GGCGCC	2 cut(s)	896, 1172
ErhI	CCWWGG	2 cut(s)	709, 738
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	8 cut(s)	62, 113, 455, 490, 524, 634, 1594, 1607
FatI	CATG	8 cut(s)	58, 109, 451, 486, 520, 630, 1590, 1603
FauNDI	CATATG	2 cut(s)	193, 574
FbaI	TGATCA	3 cut(s)	784, 1465, 1630
FblI	GTMKAC	2 cut(s)	826, 1102
FokI	GGATG	3 cut(s)	382, 1475, 1529
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	3 cut(s)	389, 896, 1172
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	2 cut(s)	898, 1174
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	390, 897, 1173
Hin1I	GRCGYC	2 cut(s)	895, 1171
Hin1II	CATG	8 cut(s)	62, 113, 455, 490, 524, 634, 1594, 1607
Hin6I	GCGC	3 cut(s)	388, 895, 1171
HinP1I	GCGC	3 cut(s)	388, 895, 1171
HphI	GGTGA	4 cut(s)	175, 549, 1624, 1625
Hpy166II	GTNNAC	6 cut(s)	479, 557, 827, 1090, 1103, 1366
Hpy188III	TCNNGA	9 cut(s)	138, 326, 460, 669, 791, 1076, 1352, 1469, 1591
Hpy8I	GTNNAC	6 cut(s)	479, 557, 827, 1090, 1103, 1366
HpyAV	CCTTC	3 cut(s)	58, 952, 1228
HpyCH4III	ACNGT	4 cut(s)	263, 332, 873, 1149
HpyCH4IV	ACGT	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	724, 908, 938, 1184, 1214, 1490
HpyF3I	CTNAG	6 cut(s)	77, 417, 656, 858, 1134, 1700
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	2 cut(s)	895, 1171
Hsp92II	CATG	8 cut(s)	62, 113, 455, 490, 524, 634, 1594, 1607
HspAI	GCGC	3 cut(s)	388, 895, 1171
KasI	GGCGCC	2 cut(s)	894, 1170
Ksp22I	TGATCA	3 cut(s)	784, 1465, 1630
Kzo9I	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
LmnI	GCTCC	2 cut(s)	187, 573
LweI	GCATC	4 cut(s)	400, 404, 504, 778
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	4 cut(s)	626, 807, 873, 1149
MalI	GATC	7 cut(s)	75, 485, 786, 949, 1225, 1467, 1632
MboI	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
MflI	RGATCY	2 cut(s)	947, 1223
Mly113I	GGCGCC	2 cut(s)	895, 1171
MlyI	GAGTC	1 cut(s)	1667
MmeI	TCCRAC	2 cut(s)	616, 1701
MroXI	GAANNNNTTC	1 cut(s)	1534
MseI	TTAA	6 cut(s)	87, 222, 833, 1109, 1433, 1556
MslI	CAYNNNNRTG	2 cut(s)	161, 1589
MspA1I	CMGCKG	1 cut(s)	758
MspR9I	CCNGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
MvaI	CCWGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
MwoI	GCNNNNNNNGC	6 cut(s)	724, 908, 938, 1184, 1214, 1490
NarI	GGCGCC	2 cut(s)	895, 1171
NdeI	CATATG	2 cut(s)	193, 574
NdeII	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
NlaIII	CATG	8 cut(s)	62, 113, 455, 490, 524, 634, 1594, 1607
NlaIV	GGNNCC	7 cut(s)	13, 189, 260, 340, 569, 896, 1172
NmuCI	GTSAC	1 cut(s)	626
NspV	TTCGAA	3 cut(s)	354, 695, 1441
OliI	CACNNNNGTG	1 cut(s)	161
PagI	TCATGA	1 cut(s)	1590
PasI	CCCWGGG	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	1534
PleI	GAGTC	1 cut(s)	1667
PluTI	GGCGCC	2 cut(s)	898, 1174
PpsI	GAGTC	1 cut(s)	1667
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	7 cut(s)	131, 229, 346, 811, 897, 1173, 1393
PspGI	CCWGG	7 cut(s)	131, 229, 346, 811, 897, 1173, 1393
PspN4I	GGNNCC	7 cut(s)	13, 189, 260, 340, 569, 896, 1172
PspPI	GGNCC	3 cut(s)	12, 67, 135
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	947, 1223
RsaI	GTAC	5 cut(s)	856, 1054, 1132, 1330, 1399
RsaNI	GTAC	5 cut(s)	855, 1053, 1131, 1329, 1398
RseI	CAYNNNNRTG	2 cut(s)	161, 1589
SaqAI	TTAA	6 cut(s)	87, 222, 833, 1109, 1433, 1556
Sau3AI	GATC	7 cut(s)	73, 483, 784, 947, 1223, 1465, 1630
Sau96I	GGNCC	3 cut(s)	12, 67, 135
SchI	GAGTC	1 cut(s)	1667
ScrFI	CCNGG	7 cut(s)	133, 231, 348, 813, 899, 1175, 1395
SfaNI	GCATC	4 cut(s)	400, 404, 504, 778
SfcI	CTRYAG	1 cut(s)	243
SfoI	GGCGCC	2 cut(s)	896, 1172
SfuI	TTCGAA	3 cut(s)	354, 695, 1441
SinI	GGWCC	2 cut(s)	67, 135
SmiMI	CAYNNNNRTG	2 cut(s)	161, 1589
SsiI	CCGC	1 cut(s)	758
SspDI	GGCGCC	2 cut(s)	894, 1170
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	7 cut(s)	131, 229, 346, 811, 897, 1173, 1393
StyI	CCWWGG	2 cut(s)	709, 738
TaaI	ACNGT	4 cut(s)	263, 332, 873, 1149
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	3 cut(s)	354, 695, 1441
TatI	WGTACW	2 cut(s)	1052, 1328
Tru1I	TTAA	6 cut(s)	87, 222, 833, 1109, 1433, 1556
Tru9I	TTAA	6 cut(s)	87, 222, 833, 1109, 1433, 1556
TscAI	CASTG	3 cut(s)	54, 922, 1198
TseFI	GTSAC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	9 cut(s)	98, 264, 582, 1002, 1278, 1527, 1531, 1579, 1607
TspGWI	ACGGA	3 cut(s)	330, 496, 1107
TspRI	CASTG	3 cut(s)	54, 922, 1198
VpaK11BI	GGWCC	2 cut(s)	67, 135
XapI	RAATTY	4 cut(s)	81, 104, 211, 697
XmiI	GTMKAC	2 cut(s)	826, 1102
XmnI	GAANNNNTTC	1 cut(s)	1534
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.