Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005363

Physical Location & Seq

Genomic Coordinates Reverse (-)

49304135 .. 49305822

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG366800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAATTCAAAGGAGCTCAATCTTTTGTCCTTCATTAAATCGTCATTGGATGAGCGTGAAGGCCCATGCCATTGTTGGTTGAATAGGTCCAAAGGTAACAGACATTTCCTTGGAAGAGATGGAACTTTCTTGGTTCTTGCTGGTCGGTGTGAAACTTTCTTAACAACTTGTGAATCTGTTGTGATGTTAGAAAAAGTGAAGTCACTTCAACAGAGGTATCCTCAGCTCCATGTCATGGGTTTTCTGTCAGGCAGTTCAGTTAGTTTAGCAGCTGCTCGAAGCCACCTAATCCAATATGTAGTAAAGGAATATGTCACTTTTCCTGTCATTTTGTCTAACAGGACCTTCCCTGAGATGGACAATGGGGCCTGCTACATTTTATTCAAAGATTTTGAAAGTCCAGTGTTTTACCATGAGAAGGACCTTGATCTCAGAATTCTTAACAAAGGGGGAATCTGCATTATGGAGATTTGTCTGGCACACATTAAATCATCAATGAGGATCACCATGGGGCACTCATCGACCACCTCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

8.48

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07060
fragaria_vesca	FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201 FvH4_2g19201
malus_domestica	MD05G1176900.v1.1 MD05G1177000.v1.1 MD10G1165500.v1.1
prunus_persica	Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1 Prupe.8G204000_v2.0.a1
pyrus_communis	pycom10g14280
rosa_chinensis	RchiOBHm_Chr6g0284991
rosa_laevigata	RLG00000012692
rosa_multiflora	Rmu_sc0006185.1_g000008
rosa_roxburghii	Rroxscaffold_7G00183860 Rroxscaffold_7G00184140
rosa_rugosa	Rorug06G0169500
rosa_samantha	Rh5DG284300 Rh6AG281300 Rh6BG282000 Rh6CG283700 Rh6DG276800 Rh7DG366800
rosa_wichuraiana	Rw6G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	2 cut(s)	4, 435
AfiI	CCNNNNNNNGG	3 cut(s)	235, 355, 418
AgsI	TTSAA	5 cut(s)	9, 82, 209, 385, 395
AluBI	AGCT	3 cut(s)	16, 226, 272
AluI	AGCT	3 cut(s)	16, 226, 272
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	1 cut(s)	509
AoxI	GGCC	2 cut(s)	61, 366
ApeKI	GCWGC	2 cut(s)	269, 272
ApoI	RAATTY	2 cut(s)	4, 435
AspS9I	GGNCC	5 cut(s)	62, 87, 342, 366, 421
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	3 cut(s)	87, 342, 421
BaeGI	GKGCMC	1 cut(s)	516
BaeI	ACNNNNGTAYC	2 cut(s)	200, 233
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	259, 281
BccI	CCATC	2 cut(s)	113, 349
BciVI	GTATCC	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	270, 273
BlsI	GCNGC	2 cut(s)	271, 274
Bme18I	GGWCC	3 cut(s)	87, 342, 421
BmgT120I	GGNCC	5 cut(s)	62, 87, 342, 366, 421
BmiI	GGNNCC	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
Bpu10I	CCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	109, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 355, 418
Bse1I	ACTGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	109, 507
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	3 cut(s)	235, 355, 418
BseMII	CTCAG	3 cut(s)	236, 342, 445
BseNI	ACTGG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	259, 281
BshFI	GGCC	2 cut(s)	63, 368
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	235, 355, 418
BsnI	GGCC	2 cut(s)	63, 368
Bsp1286I	GDGCHC	2 cut(s)	18, 516
Bsp143I	GATC	2 cut(s)	427, 501
Bsp19I	CCATGG	1 cut(s)	507
BspANI	GGCC	2 cut(s)	63, 368
BspCNI	CTCAG	3 cut(s)	235, 343, 444
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	2 cut(s)	109, 507
BssMI	GATC	2 cut(s)	427, 501
BssT1I	CCWWGG	2 cut(s)	109, 507
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	222, 351, 431
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	430, 504
BstMBI	GATC	2 cut(s)	427, 501
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	259, 281
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	63, 368
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	5 cut(s)	62, 87, 342, 366, 421
CviAII	CATG	5 cut(s)	66, 230, 235, 413, 508
CviJI	RGCY	6 cut(s)	16, 63, 226, 272, 282, 368
CviKI_1	RGCY	6 cut(s)	16, 63, 226, 272, 282, 368
DdeI	CTNAG	3 cut(s)	222, 351, 431
DpnI	GATC	2 cut(s)	429, 503
DpnII	GATC	2 cut(s)	427, 501
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	109, 507
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	3 cut(s)	87, 342, 421
Eco53kI	GAGCTC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	3 cut(s)	342, 366, 421
EcoRI	GAATTC	2 cut(s)	4, 435
EcoT14I	CCWWGG	2 cut(s)	109, 507
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	109, 507
FaeI	CATG	5 cut(s)	69, 233, 238, 416, 511
FaiI	YATR	8 cut(s)	67, 231, 236, 297, 312, 414, 464, 509
FatI	CATG	5 cut(s)	65, 229, 234, 412, 507
Fnu4HI	GCNGC	2 cut(s)	270, 273
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	2 cut(s)	270, 273
GluI	GCNGC	2 cut(s)	270, 273
HaeIII	GGCC	2 cut(s)	63, 368
Hin1II	CATG	5 cut(s)	69, 233, 238, 416, 511
HinfI	GANTC	2 cut(s)	173, 453
HphI	GGTGA	1 cut(s)	496
Hpy188I	TCNGA	1 cut(s)	434
HpyAV	CCTTC	4 cut(s)	40, 53, 355, 412
HpyCH4V	TGCA	1 cut(s)	459
HpyF3I	CTNAG	3 cut(s)	222, 351, 431
Hsp92II	CATG	5 cut(s)	69, 233, 238, 416, 511
Kzo9I	GATC	2 cut(s)	427, 501
LmnI	GCTCC	2 cut(s)	13, 231
LpnPI	CCDG	8 cut(s)	126, 234, 325, 336, 363, 382, 414, 461
Lsp1109I	GCAGC	2 cut(s)	259, 281
MaeIII	GTNAC	3 cut(s)	95, 201, 313
MalI	GATC	2 cut(s)	429, 503
MboI	GATC	2 cut(s)	427, 501
MboII	GAAGA	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	18, 516
MluCI	AATT	2 cut(s)	4, 435
MnlI	CCTC	3 cut(s)	207, 231, 492
MseI	TTAA	4 cut(s)	36, 161, 441, 486
MspA1I	CMGCKG	1 cut(s)	272
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	2 cut(s)	427, 501
NlaIII	CATG	5 cut(s)	69, 233, 238, 416, 511
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	2 cut(s)	201, 313
PfeI	GAWTC	2 cut(s)	173, 453
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	271, 274
PpuMI	RGGWCCY	2 cut(s)	342, 421
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	2 cut(s)	342, 421
PspN4I	GGNNCC	1 cut(s)	367
PspPI	GGNCC	5 cut(s)	62, 87, 342, 366, 421
PspPPI	RGGWCCY	2 cut(s)	342, 421
PvuII	CAGCTG	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	36, 161, 441, 486
SatI	GCNGC	2 cut(s)	270, 273
Sau3AI	GATC	2 cut(s)	427, 501
Sau96I	GGNCC	5 cut(s)	62, 87, 342, 366, 421
SduI	GDGCHC	2 cut(s)	18, 516
SinI	GGWCC	3 cut(s)	87, 342, 421
Sse9I	AATT	2 cut(s)	4, 435
SstI	GAGCTC	1 cut(s)	18
StyI	CCWWGG	2 cut(s)	109, 507
TaqI	TCGA	2 cut(s)	277, 521
TasI	AATT	2 cut(s)	4, 435
TfiI	GAWTC	2 cut(s)	173, 453
Tru1I	TTAA	4 cut(s)	36, 161, 441, 486
Tru9I	TTAA	4 cut(s)	36, 161, 441, 486
TscAI	CASTG	1 cut(s)	408
TseFI	GTSAC	2 cut(s)	201, 313
TseI	GCWGC	2 cut(s)	269, 272
Tsp45I	GTSAC	2 cut(s)	201, 313
TspDTI	ATGAA	2 cut(s)	17, 22
TspRI	CASTG	1 cut(s)	408
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	3 cut(s)	87, 342, 421
XapI	RAATTY	2 cut(s)	4, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.