Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008804

Physical Location & Seq

Genomic Coordinates Forward (+)

32225062 .. 32232063

Gene Structure 7002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1194900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGCCCCCAGTCTTCACTATCCTCGGTACTCACTCGAGCAGCAGTCGAATGGCTACGATAAGCCTCGGGTTATTTCTGGTGCTGGTTTTTGCGATTGCGATCTGCCATGCTGCTGCTTCTGTCTTCCAGCCGATCTCCGACTCTCACCGATCCGCGGCTTCGGAGCTCTTCGCGCCCGCCGATGGATCGTACGGGAGTTTAGAAGAGGCATATGAAGCCCTAAGATCGTTCGAGGTTCTTGGGATCAATAAGAAGTCCGATATACGCGCGGCTACGTGTCAGTCCTTTGTGGACAAACTTGGGTCATCGTCTTCTGCCCCAAAGGATTTGTTCTTTGCCTTAAAGGTTAACAGCATTTTGGATTGCGAGGTTAAAAATGAAGTCTTAGAGGGCATTGCTTCAAGACTTAAAACTATTGTCAATAGTGCAAGTTCATTGCACGACTTCTACTACTCAGTTGGAAGCTTGGTACTTATTAAGGATCAAAGTTCTGAAGTCGATGTACTTCTTGCTGATGCTGGTGGAGTTTTCCATTCTATCAAGTCTCTCAGCCAGAGTGATGGAAGGTGGCGCTTCAGTTCTGATAATCCCGAGGCTAGTACCTATGCTGCTGGTTTAGCGCTTGAAGCACTTTCTGGAGTTATCTCATTAGCATCTTCTGAAATTGATCAGTCTAAGATTGATACATTGAAAAGTGATGTTTTGAAGCTTTTTGACAGCATTGAGAAATATGATGATGGGACCATTTACTTTGATGAAAAAGTTGTTGATCTGCGTGGGCATCAGAGTCCTCTTTCAACTACTGCAGCAGTTGTTCGAGGATTGACAACATTTGCAACTGTGACATCTGGAAACATAAAGGTTCCAGGGGACAAGATATTGGGTCTGGCAAAATTCTTCCTTGGAGTAGGCATTCCTGGCAATGCTAAAGACTTCTTCAACCAAATAGATTCATTAGCTTCTTTGGAAAGCAATAAGGTTTCTATCCCACTGATATTATCACTTCCGGCTACAGTGCTTTCATTGACCAAGAAAGATCAGCTCCAGGTGAAAGTGAATACTGTGCTTGGTTCAAGTGCACCACCTCTGACAGTTAAGTTGGTGAAAGCATTCAGTTCTGGTTCAAAAGCTGCTTCCAAAATTGCAAGCCAGGAACTCAAGTTTGACAAAGAAAGTGGGTCCCATTTCTTGGACGTTTTGCCAGAAAGTGTCGATGTTGGAACTTACACATTTGTCTTTGAGGTGGTTCTGCATGATTCTGAAGATAGTGAGTCTGAAGATGAAAAAGTTTATGCAACTGGAGGTTCTACTGAAGTACAGATATTTATCACAGGAGTTATCAAAATTGAAAATGCAGAGATTGCAGTACTTGATAGTGATATTGGGAGCATAGAAACCCAGAAAAAACTAGATTTTACTGGAGAAAATACTGTCTCGCTATCAGCAAACCACCTCCAAAAGCTGCGTTTATCCTTTCAATTGACCACTCCTTCTGGGCATGCTTTTAAGCCTCATCAGGTATTTCTTAAATTGACGCATGAGACCAAGGTTGAACATATCTTTGTGGTGGGAAGCTCTGGCCAAAGGTTTGAGAAGATACTGGATTTTCTCGGATTGGTTGAGAAGTTTTACTATCTGTCTGGTAGTTATGACATTCAATTAACTGTTGGCGATGCTGTAATGGAAAACTCTTTCTTACGGGCTATTGGCCAGATTGATTTGGATCTACCAGAAGCACCTGAGAAAGCCTCCCGCCCTCCTTCTCCGGCTGTTGATCCTTACTCAAAGTTTGGTCCCAAAGCTGAGATAGCCCATATCTTTAGGGTTCCAGAAAAGCGTCCTTCTCAGGAGCTATCTCTCGTTTTCTTGGGCCTTGTGCTTTTGCCATTGATTGGATTTTTGGTTGGGCTTTTACGCTTGGGGGTGAATCTGAAGAACTTCCCTACTTCAGCAGTACCCGCCACCTTCGGTATCCTATTCCATGTTGGCGTTGCTGCAGTTCTTTTGCTCTATGTGCTTTTCTGGTTGAAGTTGGATCTATTTACGACTCTCAAAACGCTTGGATTGTTGGGAGTTTTCTTGCTGTTCGTTGGACACCGGATTCTTTCCCACCTGGCCTCTACATCATCCAAGTTGAAATCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

716

Amino Acids

77.07

Weight (kDa)

5.7

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_II	PF05817	45 - 323	5.5e-57	Ribophorin II N-terminal domain
Ribophorin_II_2nd	PF23861	331 - 442	1.7e-21	Ribophorin II second domain
Ribophorin_II_3rd	PF23860	450 - 574	1.2e-39	Ribophorin II third domain
Ribophorin_II_C	PF25147	607 - 707	9.1e-25	Ribophorin_II, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21150 AT4G21150 AT4G21150
fragaria_vesca	FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250
malus_domestica	MD05G1194900.v1.1 MD10G1181500.v1.1
prunus_persica	Prupe.8G221600_v2.0.a1
pyrus_communis	pycom05g18220
rosa_chinensis	RchiOBHm_Chr6g0287811
rosa_laevigata	RLG00000012466
rosa_multiflora	Rmu_sc0003335.1_g000010 Rmu_sc0003877.1_g000006 Rmu_sc0006738.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180780
rosa_rugosa	Rorug06G0191800 Rorug06G0191800
rosa_samantha	Rh6AG301700 Rh6BG307700
rosa_wichuraiana	Rw6G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1189, 1892
AccII	CGCG	4 cut(s)	155, 173, 267, 269
AciI	CCGC	6 cut(s)	153, 155, 177, 269, 1753, 1959
AclWI	GGATC	7 cut(s)	144, 193, 251, 489, 1731, 1769, 2043
AcoI	YGGCCR	2 cut(s)	1579, 1708
AcsI	RAATTY	1 cut(s)	893
AcuI	CTGAAG	7 cut(s)	513, 559, 1281, 1296, 1332, 1932, 1952
AfaI	GTAC	8 cut(s)	28, 191, 471, 504, 601, 1317, 1368, 1956
AfeI	AGCGCT	1 cut(s)	621
AfiI	CCNNNNNNNGG	4 cut(s)	154, 182, 1189, 1892
AflIII	ACRYGT	1 cut(s)	275
AjnI	CCWGG	5 cut(s)	865, 916, 1044, 1149, 2112
Alw21I	GWGCWC	2 cut(s)	168, 1081
Alw26I	GTCTC	3 cut(s)	549, 1438, 1535
Alw44I	GTGCAC	1 cut(s)	1077
AlwI	GGATC	7 cut(s)	144, 193, 251, 489, 1731, 1769, 2043
Ama87I	CYCGRG	3 cut(s)	34, 65, 590
Aor51HI	AGCGCT	1 cut(s)	621
AoxI	GGCC	4 cut(s)	1579, 1708, 1870, 2115
ApaLI	GTGCAC	1 cut(s)	1077
ApeKI	GCWGC	8 cut(s)	39, 110, 113, 608, 806, 1130, 1462, 1994
ApoI	RAATTY	1 cut(s)	893
Asp700I	GAANNNNTTC	2 cut(s)	1109, 1937
AspLEI	GCGC	4 cut(s)	175, 269, 573, 622
AspS9I	GGNCC	4 cut(s)	741, 1179, 1793, 1870
AsuHPI	GGTGA	4 cut(s)	137, 1060, 1114, 1936
AvaI	CYCGRG	3 cut(s)	34, 65, 590
AvaII	GGWCC	3 cut(s)	741, 1179, 1793
BaeGI	GKGCMC	1 cut(s)	1081
BalI	TGGCCA	2 cut(s)	1581, 1710
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BbsI	GAAGAC	3 cut(s)	4, 115, 303
Bbv12I	GWGCWC	2 cut(s)	168, 1081
BbvI	GCAGC	8 cut(s)	51, 97, 100, 595, 818, 1117, 1449, 1981
BccI	CCATC	3 cut(s)	176, 554, 731
BciT130I	CCWGG	5 cut(s)	867, 918, 1046, 1151, 2114
BciVI	GTATCC	1 cut(s)	1982
BclI	TGATCA	1 cut(s)	667
BcoDI	GTCTC	3 cut(s)	549, 1438, 1535
BfaI	CTAG	2 cut(s)	597, 1409
BfmI	CTRYAG	3 cut(s)	804, 1011, 1995
BfoI	RGCGCY	2 cut(s)	574, 623
BfuI	GTATCC	1 cut(s)	1982
BmcAI	AGTACT	1 cut(s)	1368
Bme1390I	CCNGG	5 cut(s)	867, 918, 1046, 1151, 2114
Bme18I	GGWCC	3 cut(s)	741, 1179, 1793
BmeT110I	CYCGRG	3 cut(s)	34, 65, 590
BmgT120I	GGNCC	4 cut(s)	741, 1179, 1793, 1870
BmiI	GGNNCC	6 cut(s)	742, 864, 1180, 1181, 1795, 1827
BmrFI	CCNGG	5 cut(s)	867, 918, 1046, 1151, 2114
BmsI	GCATC	4 cut(s)	505, 662, 790, 1663
BpiI	GAAGAC	3 cut(s)	4, 115, 303
BplI	GAGNNNNNCTC	2 cut(s)	1733, 1765
BpmI	CTGGAG	4 cut(s)	657, 1028, 1320, 1440
BpuEI	CTTGAG	1 cut(s)	1142
BsaAI	YACGTR	1 cut(s)	276
BsaBI	GATNNNNATC	3 cut(s)	98, 1325, 1722
BsaI	GGTCTC	1 cut(s)	1535
BsaJI	CCNNGG	7 cut(s)	22, 64, 153, 591, 866, 901, 1545
BsaWI	WCCGGW	1 cut(s)	2097
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 182, 1189, 1892
Bse1I	ACTGG	4 cut(s)	8, 1303, 1423, 1605
Bse3DI	GCAATG	3 cut(s)	393, 434, 928
Bse8I	GATNNNNATC	3 cut(s)	98, 1325, 1722
BseBI	CCWGG	5 cut(s)	867, 918, 1046, 1151, 2114
BseDI	CCNNGG	7 cut(s)	22, 64, 153, 591, 866, 901, 1545
BseGI	GGATG	1 cut(s)	2126
BseJI	GATNNNNATC	3 cut(s)	98, 1325, 1722
BseLI	CCNNNNNNNGG	4 cut(s)	154, 182, 1189, 1892
BseMI	GCAATG	3 cut(s)	393, 434, 928
BseMII	CTCAG	5 cut(s)	468, 562, 1731, 1794, 1859
BseNI	ACTGG	4 cut(s)	8, 1303, 1423, 1605
BseSI	GKGCMC	1 cut(s)	1081
BseXI	GCAGC	8 cut(s)	51, 97, 100, 595, 818, 1117, 1449, 1981
Bsh1236I	CGCG	4 cut(s)	155, 173, 267, 269
BshFI	GGCC	4 cut(s)	1581, 1710, 1872, 2117
BsiHKAI	GWGCWC	2 cut(s)	168, 1081
BsiHKCI	CYCGRG	3 cut(s)	34, 65, 590
BsiSI	CCGG	3 cut(s)	1007, 1766, 2098
BsiWI	CGTACG	1 cut(s)	189
BslFI	GGGAC	4 cut(s)	754, 884, 1165, 1779
BslI	CCNNNNNNNGG	4 cut(s)	154, 182, 1189, 1892
BsmAI	GTCTC	3 cut(s)	549, 1438, 1535
BsmFI	GGGAC	4 cut(s)	754, 884, 1165, 1779
BsmI	GAATGC	2 cut(s)	912, 1109
BsnI	GGCC	4 cut(s)	1581, 1710, 1872, 2117
Bso31I	GGTCTC	1 cut(s)	1535
BsoBI	CYCGRG	3 cut(s)	34, 65, 590
Bsp1286I	GDGCHC	2 cut(s)	168, 1081
BspACI	CCGC	6 cut(s)	153, 155, 177, 269, 1753, 1959
BspANI	GGCC	4 cut(s)	1581, 1710, 1872, 2117
BspCNI	CTCAG	5 cut(s)	467, 561, 1732, 1795, 1858
BspFNI	CGCG	4 cut(s)	155, 173, 267, 269
BspLI	GGNNCC	6 cut(s)	742, 864, 1180, 1181, 1795, 1827
BspMAI	CTGCAG	2 cut(s)	808, 1999
BspPI	GGATC	7 cut(s)	144, 193, 251, 489, 1731, 1769, 2043
BspQI	GCTCTTC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	1535
BsrDI	GCAATG	3 cut(s)	393, 434, 928
BsrI	ACTGG	4 cut(s)	8, 1303, 1423, 1605
BssECI	CCNNGG	7 cut(s)	22, 64, 153, 591, 866, 901, 1545
BssT1I	CCWWGG	2 cut(s)	901, 1545
Bst2UI	CCWGG	5 cut(s)	867, 918, 1046, 1151, 2114
Bst4CI	ACNGT	6 cut(s)	841, 1015, 1063, 1093, 1432, 1666
Bst6I	CTCTTC	2 cut(s)	173, 198
BstAPI	GCANNNNNTGC	1 cut(s)	1361
BstBAI	YACGTR	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	177, 1147, 1500
BstDEI	CTNAG	8 cut(s)	221, 385, 454, 548, 675, 1740, 1803, 1845
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	2126
BstFNI	CGCG	4 cut(s)	155, 173, 267, 269
BstH2I	RGCGCY	2 cut(s)	574, 623
BstHHI	GCGC	4 cut(s)	175, 269, 573, 622
BstMAI	GTCTC	3 cut(s)	549, 1438, 1535
BstMWI	GCNNNNNNNGC	9 cut(s)	172, 215, 617, 626, 918, 1361, 1808, 1958, 2014
BstNI	CCWGG	5 cut(s)	867, 918, 1046, 1151, 2114
BstNSI	RCATGY	1 cut(s)	1502
BstSCI	CCNGG	5 cut(s)	865, 916, 1044, 1149, 2112
BstSFI	CTRYAG	3 cut(s)	804, 1011, 1995
BstSLI	GKGCMC	1 cut(s)	1081
BstUI	CGCG	4 cut(s)	155, 173, 267, 269
BstV1I	GCAGC	8 cut(s)	51, 97, 100, 595, 818, 1117, 1449, 1981
BstV2I	GAAGAC	3 cut(s)	4, 115, 303
BstX2I	RGATCY	2 cut(s)	1723, 2035
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	2 cut(s)	1723, 2035
BsuI	GTATCC	1 cut(s)	1982
BsuRI	GGCC	4 cut(s)	1581, 1710, 1872, 2117
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	1686
BtsCI	GGATG	1 cut(s)	2126
BtsIMutI	CAGTG	2 cut(s)	989, 1020
Cac8I	GCNNGC	3 cut(s)	177, 1147, 1500
CfoI	GCGC	4 cut(s)	175, 269, 573, 622
Cfr13I	GGNCC	4 cut(s)	741, 1179, 1793, 1870
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	2 cut(s)	1543, 1826
Csp6I	GTAC	8 cut(s)	27, 190, 470, 503, 600, 1316, 1367, 1955
CspCI	CAANNNNNGTGG	2 cut(s)	1156, 1191
CviAII	CATG	5 cut(s)	107, 1253, 1499, 1538, 1982
CviQI	GTAC	8 cut(s)	27, 190, 470, 503, 600, 1316, 1367, 1955
DdeI	CTNAG	8 cut(s)	221, 385, 454, 548, 675, 1740, 1803, 1845
EaeI	YGGCCR	2 cut(s)	1579, 1708
Eam1104I	CTCTTC	2 cut(s)	173, 198
EarI	CTCTTC	2 cut(s)	173, 198
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	901, 1545
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	1535
Eco47I	GGWCC	3 cut(s)	741, 1179, 1793
Eco47III	AGCGCT	1 cut(s)	621
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	7 cut(s)	513, 559, 1281, 1296, 1332, 1932, 1952
Eco88I	CYCGRG	3 cut(s)	34, 65, 590
EcoICRI	GAGCTC	1 cut(s)	166
EcoO109I	RGGNCCY	1 cut(s)	1179
EcoRII	CCWGG	5 cut(s)	865, 916, 1044, 1149, 2112
EcoT14I	CCWWGG	2 cut(s)	901, 1545
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	2 cut(s)	901, 1545
FaeI	CATG	5 cut(s)	110, 1256, 1502, 1541, 1985
FaqI	GGGAC	4 cut(s)	754, 884, 1165, 1779
FatI	CATG	5 cut(s)	106, 1252, 1498, 1537, 1981
FauI	CCCGC	3 cut(s)	184, 1760, 1966
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	667
FokI	GGATG	1 cut(s)	2113
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	597, 1409
GlaI	GCGC	4 cut(s)	174, 268, 572, 621
GsuI	CTGGAG	4 cut(s)	657, 1028, 1320, 1440
HaeII	RGCGCY	2 cut(s)	574, 623
HaeIII	GGCC	4 cut(s)	1581, 1710, 1872, 2117
HapII	CCGG	3 cut(s)	1007, 1766, 2098
HgaI	GACGC	2 cut(s)	1543, 1826
HhaI	GCGC	4 cut(s)	175, 269, 573, 622
Hin1II	CATG	5 cut(s)	110, 1256, 1502, 1541, 1985
Hin6I	GCGC	4 cut(s)	173, 267, 571, 620
HinP1I	GCGC	4 cut(s)	173, 267, 571, 620
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	2 cut(s)	463, 707
HinfI	GANTC	8 cut(s)	140, 787, 950, 1256, 1271, 1927, 2047, 2101
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	3 cut(s)	1007, 1766, 2098
HphI	GGTGA	4 cut(s)	137, 1060, 1114, 1936
Hpy166II	GTNNAC	3 cut(s)	292, 349, 1079
Hpy188III	TCNNGA	6 cut(s)	402, 590, 636, 849, 1829, 1847
Hpy8I	GTNNAC	3 cut(s)	292, 349, 1079
HpyAV	CCTTC	5 cut(s)	558, 1500, 1770, 1851, 1975
HpyCH4III	ACNGT	6 cut(s)	841, 1015, 1063, 1093, 1432, 1666
HpyCH4IV	ACGT	2 cut(s)	275, 1194
HpyF10VI	GCNNNNNNNGC	9 cut(s)	172, 215, 617, 626, 918, 1361, 1808, 1958, 2014
HpyF3I	CTNAG	8 cut(s)	221, 385, 454, 548, 675, 1740, 1803, 1845
HpySE526I	ACGT	2 cut(s)	275, 1194
Hsp92II	CATG	5 cut(s)	110, 1256, 1502, 1541, 1985
HspAI	GCGC	4 cut(s)	173, 267, 571, 620
KflI	GGGWCCC	1 cut(s)	1179
Ksp22I	TGATCA	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	156
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	4 cut(s)	163, 1047, 1386, 1849
Lsp1109I	GCAGC	8 cut(s)	51, 97, 100, 595, 818, 1117, 1449, 1981
LweI	GCATC	4 cut(s)	505, 662, 790, 1663
MaeI	CTAG	2 cut(s)	597, 1409
MaeII	ACGT	2 cut(s)	275, 1194
MaeIII	GTNAC	1 cut(s)	841
MfeI	CAATTG	1 cut(s)	1478
MflI	RGATCY	2 cut(s)	1723, 2035
MhlI	GDGCHC	2 cut(s)	168, 1081
MlsI	TGGCCA	2 cut(s)	1581, 1710
MluCI	AATT	7 cut(s)	663, 893, 1140, 1344, 1478, 1529, 1658
MluNI	TGGCCA	2 cut(s)	1581, 1710
MlyI	GAGTC	4 cut(s)	134, 796, 1280, 2041
MmeI	TCCRAC	5 cut(s)	162, 439, 1198, 2013, 2071
Mox20I	TGGCCA	2 cut(s)	1581, 1710
MroXI	GAANNNNTTC	2 cut(s)	1109, 1937
MscI	TGGCCA	2 cut(s)	1581, 1710
MseI	TTAA	9 cut(s)	341, 348, 372, 408, 477, 1095, 1506, 1527, 1661
Msp20I	TGGCCA	2 cut(s)	1581, 1710
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	3 cut(s)	1007, 1766, 2098
MspR9I	CCNGG	5 cut(s)	867, 918, 1046, 1151, 2114
MunI	CAATTG	1 cut(s)	1478
Mva1269I	GAATGC	2 cut(s)	912, 1109
MvaI	CCWGG	5 cut(s)	867, 918, 1046, 1151, 2114
MvnI	CGCG	4 cut(s)	155, 173, 267, 269
MwoI	GCNNNNNNNGC	9 cut(s)	172, 215, 617, 626, 918, 1361, 1808, 1958, 2014
NdeI	CATATG	1 cut(s)	211
NlaIII	CATG	5 cut(s)	110, 1256, 1502, 1541, 1985
NlaIV	GGNNCC	6 cut(s)	742, 864, 1180, 1181, 1795, 1827
NmuCI	GTSAC	1 cut(s)	841
NspI	RCATGY	1 cut(s)	1502
PaeI	GCATGC	1 cut(s)	1502
PaeR7I	CTCGAG	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	912, 1109
PdmI	GAANNNNTTC	2 cut(s)	1109, 1937
PfeI	GAWTC	4 cut(s)	950, 1256, 1927, 2101
Pfl23II	CGTACG	1 cut(s)	189
PflMI	CCANNNNNTGG	2 cut(s)	1189, 1892
PleI	GAGTC	4 cut(s)	134, 795, 1279, 2041
PpsI	GAGTC	4 cut(s)	134, 795, 1279, 2041
Ppu21I	YACGTR	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	1179
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	1179
Psp6I	CCWGG	5 cut(s)	865, 916, 1044, 1149, 2112
PspGI	CCWGG	5 cut(s)	865, 916, 1044, 1149, 2112
PspLI	CGTACG	1 cut(s)	189
PspN4I	GGNNCC	6 cut(s)	742, 864, 1180, 1181, 1795, 1827
PspPI	GGNCC	4 cut(s)	741, 1179, 1793, 1870
PspPPI	RGGWCCY	1 cut(s)	1179
PspXI	VCTCGAGB	1 cut(s)	34
PstI	CTGCAG	2 cut(s)	808, 1999
PsuI	RGATCY	2 cut(s)	1723, 2035
RsaI	GTAC	8 cut(s)	28, 191, 471, 504, 601, 1317, 1368, 1956
RsaNI	GTAC	8 cut(s)	27, 190, 470, 503, 600, 1316, 1367, 1955
SacI	GAGCTC	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	9 cut(s)	341, 348, 372, 408, 477, 1095, 1506, 1527, 1661
Sau96I	GGNCC	4 cut(s)	741, 1179, 1793, 1870
ScaI	AGTACT	1 cut(s)	1368
SchI	GAGTC	4 cut(s)	134, 796, 1280, 2041
ScrFI	CCNGG	5 cut(s)	867, 918, 1046, 1151, 2114
SduI	GDGCHC	2 cut(s)	168, 1081
SfaNI	GCATC	4 cut(s)	505, 662, 790, 1663
SfcI	CTRYAG	3 cut(s)	804, 1011, 1995
Sfr274I	CTCGAG	1 cut(s)	34
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	741, 1179, 1793
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 1157
SmoI	CTYRAG	2 cut(s)	34, 1157
SphI	GCATGC	1 cut(s)	1502
Sse9I	AATT	7 cut(s)	663, 893, 1140, 1344, 1478, 1529, 1658
SsiI	CCGC	6 cut(s)	153, 155, 177, 269, 1753, 1959
SspMI	CTAG	2 cut(s)	597, 1409
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	865, 916, 1044, 1149, 2112
StyI	CCWWGG	2 cut(s)	901, 1545
TaaI	ACNGT	6 cut(s)	841, 1015, 1063, 1093, 1432, 1666
TaiI	ACGT	2 cut(s)	278, 1197
TaqI	TCGA	6 cut(s)	35, 46, 231, 498, 817, 1212
TasI	AATT	7 cut(s)	663, 893, 1140, 1344, 1478, 1529, 1658
TatI	WGTACW	3 cut(s)	502, 1315, 1366
TauI	GCSGC	2 cut(s)	158, 272
TfiI	GAWTC	4 cut(s)	950, 1256, 1927, 2101
Tru1I	TTAA	9 cut(s)	341, 348, 372, 408, 477, 1095, 1506, 1527, 1661
Tru9I	TTAA	9 cut(s)	341, 348, 372, 408, 477, 1095, 1506, 1527, 1661
TscAI	CASTG	2 cut(s)	996, 1020
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	8 cut(s)	39, 110, 113, 608, 806, 1130, 1462, 1994
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	7 cut(s)	228, 393, 423, 771, 942, 1011, 1296
TspRI	CASTG	2 cut(s)	996, 1020
Van91I	CCANNNNNTGG	2 cut(s)	1189, 1892
VneI	GTGCAC	1 cut(s)	1077
VpaK11BI	GGWCC	3 cut(s)	741, 1179, 1793
XapI	RAATTY	1 cut(s)	893
XceI	RCATGY	1 cut(s)	1502
XhoI	CTCGAG	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	1109, 1937
XspI	CTAG	2 cut(s)	597, 1409
ZrmI	AGTACT	1 cut(s)	1368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.