Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008804

Physical Location & Seq

Genomic Coordinates Forward (+)

30843415 .. 30849805

Gene Structure 6391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0191800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGATTTCGTTGGTGACCGTTTTGAGAAGTCTGTTTGCAGTGCTGGGCTCCGTGATGCTGATCACTCTTCTTTACACCATCTTCACCGACGGCCTTCCTTTCCGCCTCGACCTCCTTACTCCGTGGATGGCTGCAACCTTGGTTGATTTCTATATCAATATTGTGCCTATAGCGGCTTGGTTTTTCTACAAGGAATCAAACTGGATTAGTGCAGCACTGTGGATAATACTGCTAGCATGTTTTGGAAGTTTGACTACATGCGGCTACATCCTTCTGCAATTGATGAAGCTTTCTACGAAAGAGTCAGAAGATCCCATTTACTATGTTCTGTTGTGCCATTCAAACAAGTATGGTGTGGTAAATAAGCACAAGCACTCCCCTGTTCTGATTGCCAGAGTTCTATTTAGTGCTTTGGGGCTTTTGATGCTAGGAACTCTTCTATACACTCTGTTTACAGATGGTTCTCCTTTTCGCAGAGAGCTTTTTACTCCGTGGATGATGGCAACTCTAATTGACTTTTATATCAATGTCACAGCTCTTTCAGTTTGGGTTGCTTACAAAGAATCAAGCTGGATTTCTGCAGTAGTCTGGATAGTTTTATTGATATGTTTTGGCAGCATTACCACGTGTGTCTATATCATCCTTCAGCTGTGGCAGCTGACATCCCAAGATCCAATCTACCTCATTTTGTTTAAAAGTGGTGACAGAAAGCAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

240

Amino Acids

27.33

Weight (kDa)

8.23

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1475	PF07343	4 - 117	3.3e-42	Protein of unknown function (DUF1475)
DUF1475	PF07343	119 - 236	8.5e-46	Protein of unknown function (DUF1475)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21150 AT4G21150 AT4G21150
fragaria_vesca	FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250
malus_domestica	MD05G1194900.v1.1 MD10G1181500.v1.1
prunus_persica	Prupe.8G221600_v2.0.a1
pyrus_communis	pycom05g18220
rosa_chinensis	RchiOBHm_Chr6g0287811
rosa_laevigata	RLG00000012466
rosa_multiflora	Rmu_sc0003335.1_g000010 Rmu_sc0003877.1_g000006 Rmu_sc0006738.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180780
rosa_rugosa	Rorug06G0191800 Rorug06G0191800
rosa_samantha	Rh6AG301700 Rh6BG307700
rosa_wichuraiana	Rw6G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	706
Acc36I	ACCTGC	1 cut(s)	706
AciI	CCGC	3 cut(s)	106, 176, 264
AclWI	GGATC	2 cut(s)	308, 668
AcuI	CTGAAG	1 cut(s)	632
AcvI	CACGTG	1 cut(s)	630
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	1 cut(s)	345
AluBI	AGCT	6 cut(s)	292, 484, 539, 573, 652, 661
AluI	AGCT	6 cut(s)	292, 484, 539, 573, 652, 661
AlwI	GGATC	2 cut(s)	308, 668
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	4 cut(s)	134, 215, 618, 658
AsuHPI	GGTGA	3 cut(s)	28, 79, 716
AsuNHI	GCTAGC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbrPI	CACGTG	1 cut(s)	630
BbvI	GCAGC	4 cut(s)	121, 227, 630, 670
BccI	CCATC	4 cut(s)	89, 124, 455, 496
BceAI	ACGGC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	2 cut(s)	236, 431
BfmI	CTRYAG	2 cut(s)	171, 582
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
BlsI	GCNGC	6 cut(s)	136, 178, 217, 266, 620, 660
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	2 cut(s)	48, 417
BmtI	GCTAGC	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	125, 141, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bse1I	ACTGG	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	125, 141, 494
BseGI	GGATG	5 cut(s)	135, 270, 504, 642, 665
BseJI	GATNNNNATC	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	121, 227, 630, 670
BseYI	CCCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	63, 313, 673
BspACI	CCGC	3 cut(s)	106, 176, 264
BspANI	GGCC	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	239
BspPI	GGATC	2 cut(s)	308, 668
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	125, 141, 494
BssMI	GATC	3 cut(s)	63, 313, 673
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	22, 222
Bst6I	CTCTTC	2 cut(s)	75, 444
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	237
BstDSI	CCRYGG	2 cut(s)	125, 494
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	5 cut(s)	135, 270, 504, 642, 665
BstKTI	GATC	3 cut(s)	66, 316, 676
BstMBI	GATC	3 cut(s)	63, 313, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	427, 658
BstNSI	RCATGY	2 cut(s)	243, 264
BstPI	GGTNACC	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	171, 582
BstV1I	GCAGC	4 cut(s)	121, 227, 630, 670
BstX2I	RGATCY	2 cut(s)	313, 673
BstYI	RGATCY	2 cut(s)	313, 673
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	125, 494
BtsCI	GGATG	5 cut(s)	135, 270, 504, 642, 665
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	2 cut(s)	48, 218
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	1 cut(s)	237
CviAII	CATG	2 cut(s)	240, 261
DpnI	GATC	3 cut(s)	65, 315, 675
DpnII	GATC	3 cut(s)	63, 313, 673
DraI	TTTAAA	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	75, 444
EarI	CTCTTC	2 cut(s)	75, 444
EciI	GGCGGA	1 cut(s)	95
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	632
Eco72I	CACGTG	1 cut(s)	630
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	243, 264
FatI	CATG	2 cut(s)	239, 260
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
FokI	GGATG	5 cut(s)	142, 257, 511, 629, 652
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
FspBI	CTAG	2 cut(s)	236, 431
GluI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	243, 264
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	197, 305, 566
HphI	GGTGA	3 cut(s)	28, 79, 716
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	2 cut(s)	310, 390
Hpy188III	TCNNGA	1 cut(s)	592
Hpy8I	GTNNAC	1 cut(s)	456
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	3 cut(s)	107, 284, 656
HpyCH4III	ACNGT	2 cut(s)	22, 222
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	5 cut(s)	41, 137, 215, 280, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	427, 658
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	2 cut(s)	243, 264
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 313, 673
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	32, 190, 396, 409, 559, 577, 701
Lsp1109I	GCAGC	4 cut(s)	121, 227, 630, 670
LweI	GCATC	2 cut(s)	48, 417
MaeI	CTAG	2 cut(s)	236, 431
MaeII	ACGT	1 cut(s)	629
MaeIII	GTNAC	3 cut(s)	16, 532, 704
MalI	GATC	3 cut(s)	65, 315, 675
MboI	GATC	3 cut(s)	63, 313, 673
MboII	GAAGA	4 cut(s)	62, 76, 323, 431
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	2 cut(s)	313, 673
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	2 cut(s)	281, 513
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	3 cut(s)	119, 125, 695
MseI	TTAA	1 cut(s)	696
MspA1I	CMGCKG	2 cut(s)	652, 661
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	427, 658
NdeII	GATC	3 cut(s)	63, 313, 673
NheI	GCTAGC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	243, 264
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	3 cut(s)	16, 532, 704
NspI	RCATGY	2 cut(s)	243, 264
PaqCI	CACCTGC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	197, 566
PkrI	GCNGC	6 cut(s)	136, 178, 217, 266, 620, 660
PleI	GAGTC	1 cut(s)	313
PmaCI	CACGTG	1 cut(s)	630
PmlI	CACGTG	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	313
Ppu21I	YACGTR	1 cut(s)	630
PspCI	CACGTG	1 cut(s)	630
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	2 cut(s)	313, 673
PvuII	CAGCTG	2 cut(s)	652, 661
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	6 cut(s)	135, 177, 216, 265, 619, 659
Sau3AI	GATC	3 cut(s)	63, 313, 673
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	48, 417
SfcI	CTRYAG	2 cut(s)	171, 582
Sse9I	AATT	2 cut(s)	281, 513
SsiI	CCGC	3 cut(s)	106, 176, 264
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	2 cut(s)	236, 431
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	22, 222
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	281, 513
TauI	GCSGC	2 cut(s)	179, 267
TfiI	GAWTC	2 cut(s)	197, 566
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	2 cut(s)	48, 225
TseFI	GTSAC	3 cut(s)	16, 532, 704
TseI	GCWGC	4 cut(s)	134, 215, 618, 658
Tsp45I	GTSAC	3 cut(s)	16, 532, 704
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	3 cut(s)	43, 114, 483
TspRI	CASTG	2 cut(s)	48, 225
XceI	RCATGY	2 cut(s)	243, 264
XspI	CTAG	2 cut(s)	236, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.