Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008804

Physical Location & Seq

Genomic Coordinates Reverse (-)

20117933 .. 20126811

Gene Structure 8879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGGGCGGGTGTGTACAAAGGGCAAGTCGAAGAGGGAATATCATACATTTAGAAGAGGCGTATGAAGCCCTGAGATCGTTTGAGGTTCTCGGGATTGATAAGCCTGATATACGTGGCGCTACTTGTAAGTCTGTTGTGGAAAAGCTTGGATCATCGGAATCTGCTCCAAAAGACTTGTTCTATGCCTTAAAGGTTAACAGCATTTTGAAGTGTGTGGTTAAGAAGGAAGTACTTGAGGGCATTGCTTCAAGACTTAAAGCTGTGGTAAATGGTGCAAGCTCATTGCTAGACATCTATTACTCTATTGGCAGTTTGGTGCTTATTAAGGATCAGACTTCTGAGGTCGATGTACTTCTTGCTGATGCTGATGGCATTTTCCGATCTATCAAGTCTCTGAGCCAGAGTGATGGAAGGTGGCGCTTCAGTTCAGATAATCCCCAGTCTAGTACCTATGCTGCTGGATTAGCGATTGAAGCACTTGCTGGAGTTGTTTCATTAGCATCCTCTGAAATTGATCAGTCTATGATTGGGAAATTGAAAAGGGATGTTTCGAAGCTTTTTGACAGTGTCGAGAAATATGATGATGGCGCCTTTTATTTTGATGAAAAAGTTGATCAGAGTCCTCTTTCAACTACCGCGTCAGTTGTTCGAGGGCTGACAGCATTAGCAGCTGTGACGTCTGAAAAGTTAAAGGTTCCAGGGGAGAAGATATTGGGTTTGGCAAAATTCTTCCTTGGGATTGGCATTCCAGGCAATAATAAAGATTTCTTCAACCAGATTGACTCTTTAGCTTTTTTGGAAAGCAATAAGGTCTCCGTCCCTCTGATTTTATCGCTTCCAACTACAGTGCTTTCATTGACTAAAAAAAACCAGCTCAAGGTTAAAGTTGGTACTGTGCTTGGATCAAGTGCTCCTCCTCTGACCGTTAAATTGATGCGAGCTTTCAGTTCTGGTTCAAAAGATGCTTCCATTATTGCCAGCCAGGAACTCAAGTTCGATAAAGAAAGTGGATACCATGTCCTGGATGTTTTGCCAAAAAGTGTTGATGTTGGAAGTTACATATTTGTCTTTGAGGTTGTTCTTCATGATTCTGAAAGACGAAACCGTTTATACAACTGGAGATTAGATTTAGCTGGAGAAAATGCAGTTTCACTATCAGCAAACCACCTCCAAAAGCTGCGCCTATCCTTTCAATTGACTACTCCTTTGGGTCATGCTTTTAAGCCACATCAGGTGTTTCTCAAATTGACACATGAGACCAAGGTTGAACATATATTTGTGGTGGGGAACTCCGGCACAAAATTTGAGAAAATACTAGATTTCCTCGGGTTGGTTGACAAGTTTTACTATCTCTCGGGTAGTTACGACCTTCAATTAACTGTTGGAGATGCTGTAATGGAGAACTCTTTCTTACGGGCTATTGGCCACATTGATTTAGATCTACCAGAAGCACCTGAGAAGGCCACCCGCCCTCCTTCACCGGCTGTTAACCCTTTTTTAAAGTATGGGCCCAAAGCAGAGATAAGCCATATTTTCAGGGTTCCAGAGAAGCTTCCTCCTAACCATCTTTCTCTTGCTTTCTTGGGTCTTCTGCTTTTGCCATTGATTGGATTTTTGGTTGGGCTATTGCGCTTAGGAGTGAATCTGAAGAACTTCCCTACGTCAGCAGTTCCAACCGCCTTTGGTATTCTATTCCATGTTGGCATTGCAGCAGTTCTTTTGCTCTATGTGCTTTTCTGGCTGAAGGGCCAGTTTGATATGGGGCGGTTTGATATGAGATGTGGCGTGGTTGCGAATGAGGCTTGGGTGAAGACTGAAATGGGAGGGGTACAGAGGTTTAGGTGTGTATCAAAAGAGTGGGATGGTCTCACCAAAACTAGTTATTTCCGGGACAGACATCGTCTTCACAGCTCTCGCCGTCTGCTCCTCATCTCCTCATCCTCTCTTGCTGCCGGAAATAGTAACAAGAAAGGAGTTGGAATCTCATTACTTGCTGACGAAGAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAACGATGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

684

Amino Acids

74.83

Weight (kDa)

8.97

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_II	PF05817	17 - 267	2.8e-54	Ribophorin II N-terminal domain
Ribophorin_II_2nd	PF23861	275 - 364	1.4e-19	Ribophorin II second domain
Ribophorin_II_3rd	PF23860	357 - 479	7e-35	Ribophorin II third domain
Ribophorin_II_C	PF25147	512 - 582	6.1e-14	Ribophorin_II, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21150 AT4G21150 AT4G21150
fragaria_vesca	FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250
malus_domestica	MD05G1194900.v1.1 MD10G1181500.v1.1
prunus_persica	Prupe.8G221600_v2.0.a1
pyrus_communis	pycom05g18220
rosa_chinensis	RchiOBHm_Chr6g0287811
rosa_laevigata	RLG00000012466
rosa_multiflora	Rmu_sc0003335.1_g000010 Rmu_sc0003877.1_g000006 Rmu_sc0006738.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180780
rosa_rugosa	Rorug06G0191800 Rorug06G0191800
rosa_samantha	Rh6AG301700 Rh6BG307700
rosa_wichuraiana	Rw6G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	680
AccB1I	GGYRCC	1 cut(s)	587
AccB7I	CCANNNNNTGG	2 cut(s)	1021, 1607
AccII	CGCG	1 cut(s)	638
AciI	CCGC	5 cut(s)	6, 636, 1468, 1677, 1765
AclWI	GGATC	3 cut(s)	157, 336, 910
AcoI	YGGCCR	1 cut(s)	1423
AcsI	RAATTY	2 cut(s)	725, 1301
AcuI	CTGAAG	3 cut(s)	406, 1667, 1763
AcyI	GRCGYC	2 cut(s)	588, 677
AfaI	GTAC	7 cut(s)	15, 231, 351, 448, 892, 1830, 2028
AfiI	CCNNNNNNNGG	4 cut(s)	877, 1021, 1330, 1607
AhlI	ACTAGT	1 cut(s)	1877
AjnI	CCWGG	4 cut(s)	697, 748, 981, 1020
AloI	GAACNNNNNNTCC	2 cut(s)	977, 1009
Alw21I	GWGCWC	1 cut(s)	913
Alw26I	GTCTC	4 cut(s)	396, 817, 1250, 1871
AlwI	GGATC	3 cut(s)	157, 336, 910
Ama87I	CYCGRG	3 cut(s)	89, 1325, 1354
AoxI	GGCC	4 cut(s)	1423, 1461, 1508, 1747
ApaI	GGGCCC	1 cut(s)	1512
ApeKI	GCWGC	5 cut(s)	455, 668, 1177, 1709, 1949
ApoI	RAATTY	2 cut(s)	725, 1301
ArsI	GACNNNNNNTTYG	4 cut(s)	10, 42, 1189, 1221
Asp700I	GAANNNNTTC	2 cut(s)	1406, 1652
AspLEI	GCGC	5 cut(s)	119, 420, 590, 1182, 1632
AspS9I	GGNCC	3 cut(s)	1508, 1509, 1747
AsuC2I	CCSGG	1 cut(s)	1889
AsuHPI	GGTGA	3 cut(s)	1470, 1819, 1861
AsuII	TTCGAA	1 cut(s)	551
AvaI	CYCGRG	3 cut(s)	89, 1325, 1354
BaeGI	GKGCMC	1 cut(s)	1512
BaeI	ACNNNNGTAYC	2 cut(s)	1820, 1853
BalI	TGGCCA	1 cut(s)	1425
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	1512
BbsI	GAAGAC	3 cut(s)	1580, 1817, 1895
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	5 cut(s)	442, 680, 1164, 1721, 1936
BccI	CCATC	5 cut(s)	362, 401, 578, 1572, 1856
BceAI	ACGGC	2 cut(s)	1902, 2022
BciT130I	CCWGG	4 cut(s)	699, 750, 983, 1022
BciVI	GTATCC	1 cut(s)	1004
BclI	TGATCA	2 cut(s)	514, 613
BcnI	CCSGG	1 cut(s)	1889
BcoDI	GTCTC	4 cut(s)	396, 817, 1250, 1871
BcuI	ACTAGT	1 cut(s)	1877
BfaI	CTAG	4 cut(s)	287, 444, 1316, 1878
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	3 cut(s)	120, 421, 591
BfuI	GTATCC	1 cut(s)	1004
BglII	AGATCT	1 cut(s)	1438
BisI	GCNGC	5 cut(s)	456, 669, 1178, 1710, 1950
BlsI	GCNGC	5 cut(s)	457, 670, 1179, 1711, 1951
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	5 cut(s)	699, 750, 983, 1022, 1889
BmeT110I	CYCGRG	3 cut(s)	89, 1325, 1354
BmgT120I	GGNCC	3 cut(s)	1508, 1509, 1747
BmiI	GGNNCC	4 cut(s)	589, 696, 1510, 1542
BmrFI	CCNGG	5 cut(s)	699, 750, 983, 1022, 1889
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	6 cut(s)	352, 509, 924, 952, 1378, 2035
BmuI	ACTGGG	1 cut(s)	433
BpiI	GAAGAC	3 cut(s)	1580, 1817, 1895
BpmI	CTGGAG	3 cut(s)	504, 1138, 1155
Bpu10I	CCTNAGC	1 cut(s)	1633
Bpu14I	TTCGAA	1 cut(s)	551
BpuEI	CTTGAG	3 cut(s)	254, 860, 974
BpuMI	CCSGG	1 cut(s)	1889
BsaAI	YACGTR	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	1437
BsaHI	GRCGYC	2 cut(s)	588, 677
BsaI	GGTCTC	3 cut(s)	817, 1250, 1871
BsaJI	CCNNGG	4 cut(s)	698, 733, 1260, 1324
BsaXI	ACNNNNNCTCC	6 cut(s)	1377, 1407, 1456, 1486, 2019, 2049
Bsc4I	CCNNNNNNNGG	4 cut(s)	877, 1021, 1330, 1607
Bse118I	RCCGGY	1 cut(s)	1480
Bse1I	ACTGG	3 cut(s)	439, 1121, 1750
Bse3DI	GCAATG	3 cut(s)	240, 281, 1704
Bse8I	GATNNNNATC	1 cut(s)	1437
BseBI	CCWGG	4 cut(s)	699, 750, 983, 1022
BseDI	CCNNGG	4 cut(s)	698, 733, 1260, 1324
BseGI	GGATG	5 cut(s)	500, 550, 1030, 1867, 1937
BseJI	GATNNNNATC	1 cut(s)	1437
BseLI	CCNNNNNNNGG	4 cut(s)	877, 1021, 1330, 1607
BseMI	GCAATG	3 cut(s)	240, 281, 1704
BseMII	CTCAG	4 cut(s)	62, 330, 386, 1446
BseNI	ACTGG	3 cut(s)	439, 1121, 1750
BseRI	GAGGAG	4 cut(s)	903, 906, 1916, 1924
BseSI	GKGCMC	1 cut(s)	1512
BseXI	GCAGC	5 cut(s)	442, 680, 1164, 1721, 1936
Bsh1236I	CGCG	1 cut(s)	638
BshFI	GGCC	4 cut(s)	1425, 1463, 1510, 1749
BshNI	GGYRCC	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	913
BsiHKCI	CYCGRG	3 cut(s)	89, 1325, 1354
BsiSI	CCGG	4 cut(s)	1293, 1481, 1888, 1953
BslFI	GGGAC	2 cut(s)	803, 1904
BslI	CCNNNNNNNGG	4 cut(s)	877, 1021, 1330, 1607
BsmAI	GTCTC	4 cut(s)	396, 817, 1250, 1871
BsmFI	GGGAC	2 cut(s)	803, 1904
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	4 cut(s)	1425, 1463, 1510, 1749
Bso31I	GGTCTC	3 cut(s)	817, 1250, 1871
BsoBI	CYCGRG	3 cut(s)	89, 1325, 1354
Bsp119I	TTCGAA	1 cut(s)	551
Bsp120I	GGGCCC	1 cut(s)	1508
Bsp1286I	GDGCHC	2 cut(s)	913, 1512
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
BspACI	CCGC	5 cut(s)	6, 636, 1468, 1677, 1765
BspANI	GGCC	4 cut(s)	1425, 1463, 1510, 1749
BspCNI	CTCAG	4 cut(s)	63, 331, 387, 1447
BspFNI	CGCG	1 cut(s)	638
BspHI	TCATGA	1 cut(s)	1084
BspLI	GGNNCC	4 cut(s)	589, 696, 1510, 1542
BspPI	GGATC	3 cut(s)	157, 336, 910
BspT104I	TTCGAA	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	587
BspTNI	GGTCTC	3 cut(s)	817, 1250, 1871
BsrDI	GCAATG	3 cut(s)	240, 281, 1704
BsrFI	RCCGGY	1 cut(s)	1480
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	3 cut(s)	439, 1121, 1750
BssAI	RCCGGY	1 cut(s)	1480
BssECI	CCNNGG	4 cut(s)	698, 733, 1260, 1324
BssMI	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
BssNI	GRCGYC	2 cut(s)	588, 677
BssT1I	CCWWGG	2 cut(s)	733, 1260
Bst2UI	CCWGG	4 cut(s)	699, 750, 983, 1022
Bst4CI	ACNGT	6 cut(s)	566, 847, 895, 925, 1106, 1381
Bst6I	CTCTTC	2 cut(s)	25, 48
BstACI	GRCGYC	2 cut(s)	588, 677
BstAUI	TGTACA	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	277, 939, 979
BstDEI	CTNAG	5 cut(s)	71, 339, 395, 1455, 1633
BstF5I	GGATG	5 cut(s)	500, 550, 1030, 1867, 1937
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	3 cut(s)	120, 421, 591
BstHHI	GCGC	5 cut(s)	119, 420, 590, 1182, 1632
BstKTI	GATC	8 cut(s)	77, 152, 331, 383, 517, 616, 905, 1441
BstMAI	GTCTC	4 cut(s)	396, 817, 1250, 1871
BstMBI	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 464, 473, 668, 750, 1729, 1738, 1799
BstNI	CCWGG	4 cut(s)	699, 750, 983, 1022
BstSCI	CCNGG	5 cut(s)	697, 748, 981, 1020, 1887
BstSFI	CTRYAG	1 cut(s)	843
BstSLI	GKGCMC	1 cut(s)	1512
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	5 cut(s)	442, 680, 1164, 1721, 1936
BstV2I	GAAGAC	3 cut(s)	1580, 1817, 1895
BstX2I	RGATCY	1 cut(s)	1438
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	1438
BsuI	GTATCC	1 cut(s)	1004
BsuRI	GGCC	4 cut(s)	1425, 1463, 1510, 1749
BtsCI	GGATG	5 cut(s)	500, 550, 1030, 1867, 1937
BtsIMutI	CAGTG	2 cut(s)	571, 852
Cac8I	GCNNGC	3 cut(s)	277, 939, 979
CciI	TCATGA	1 cut(s)	1084
CfoI	GCGC	5 cut(s)	119, 420, 590, 1182, 1632
Cfr10I	RCCGGY	1 cut(s)	1480
Cfr13I	GGNCC	3 cut(s)	1508, 1509, 1747
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	7 cut(s)	14, 230, 350, 447, 891, 1829, 2027
CviAII	CATG	5 cut(s)	1016, 1085, 1214, 1253, 1697
CviQI	GTAC	7 cut(s)	14, 230, 350, 447, 891, 1829, 2027
DdeI	CTNAG	5 cut(s)	71, 339, 395, 1455, 1633
DinI	GGCGCC	1 cut(s)	589
DpnI	GATC	8 cut(s)	76, 151, 330, 382, 516, 615, 904, 1440
DpnII	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
DraI	TTTAAA	1 cut(s)	1500
EaeI	YGGCCR	1 cut(s)	1423
Eam1104I	CTCTTC	2 cut(s)	25, 48
EarI	CTCTTC	2 cut(s)	25, 48
Eco130I	CCWWGG	2 cut(s)	733, 1260
Eco24I	GRGCYC	1 cut(s)	1512
Eco31I	GGTCTC	3 cut(s)	817, 1250, 1871
Eco57I	CTGAAG	3 cut(s)	406, 1667, 1763
Eco88I	CYCGRG	3 cut(s)	89, 1325, 1354
EcoRII	CCWGG	4 cut(s)	697, 748, 981, 1020
EcoT14I	CCWWGG	2 cut(s)	733, 1260
EcoT38I	GRGCYC	1 cut(s)	1512
EgeI	GGCGCC	1 cut(s)	589
EheI	GGCGCC	1 cut(s)	589
ErhI	CCWWGG	2 cut(s)	733, 1260
FaeI	CATG	5 cut(s)	1019, 1088, 1217, 1256, 1700
FaqI	GGGAC	2 cut(s)	803, 1904
FatI	CATG	5 cut(s)	1015, 1084, 1213, 1252, 1696
FauI	CCCGC	1 cut(s)	1475
FbaI	TGATCA	2 cut(s)	514, 613
Fnu4HI	GCNGC	5 cut(s)	456, 669, 1178, 1710, 1950
FokI	GGATG	5 cut(s)	487, 557, 1037, 1874, 1924
FriOI	GRGCYC	1 cut(s)	1512
Fsp4HI	GCNGC	5 cut(s)	456, 669, 1178, 1710, 1950
FspBI	CTAG	4 cut(s)	287, 444, 1316, 1878
GlaI	GCGC	5 cut(s)	118, 419, 589, 1181, 1631
GluI	GCNGC	5 cut(s)	456, 669, 1178, 1710, 1950
GsuI	CTGGAG	3 cut(s)	504, 1138, 1155
HaeII	RGCGCY	3 cut(s)	120, 421, 591
HaeIII	GGCC	4 cut(s)	1425, 1463, 1510, 1749
HapII	CCGG	4 cut(s)	1293, 1481, 1888, 1953
HgaI	GACGC	1 cut(s)	627
HhaI	GCGC	5 cut(s)	119, 420, 590, 1182, 1632
Hin1I	GRCGYC	2 cut(s)	588, 677
Hin1II	CATG	5 cut(s)	1019, 1088, 1217, 1256, 1700
Hin6I	GCGC	5 cut(s)	117, 418, 588, 1180, 1630
HinP1I	GCGC	5 cut(s)	117, 418, 588, 1180, 1630
HincII	GTYRAC	3 cut(s)	196, 1336, 1489
HindII	GTYRAC	3 cut(s)	196, 1336, 1489
HindIII	AAGCTT	3 cut(s)	143, 554, 1550
HinfI	GANTC	6 cut(s)	158, 619, 782, 1088, 1642, 1980
HpaI	GTTAAC	2 cut(s)	196, 1489
HpaII	CCGG	4 cut(s)	1293, 1481, 1888, 1953
HphI	GGTGA	3 cut(s)	1470, 1819, 1861
Hpy166II	GTNNAC	5 cut(s)	14, 196, 1336, 1489, 2027
Hpy188III	TCNNGA	5 cut(s)	91, 249, 571, 1085, 1544
Hpy8I	GTNNAC	5 cut(s)	14, 196, 1336, 1489, 2027
HpyAV	CCTTC	6 cut(s)	217, 405, 1379, 1453, 1485, 1738
HpyCH4III	ACNGT	6 cut(s)	566, 847, 895, 925, 1106, 1381
HpyCH4IV	ACGT	3 cut(s)	112, 677, 1661
HpyCH4V	TGCA	4 cut(s)	275, 1145, 1709, 2048
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 464, 473, 668, 750, 1729, 1738, 1799
HpyF3I	CTNAG	5 cut(s)	71, 339, 395, 1455, 1633
HpySE526I	ACGT	3 cut(s)	112, 677, 1661
Hsp92I	GRCGYC	2 cut(s)	588, 677
Hsp92II	CATG	5 cut(s)	1019, 1088, 1217, 1256, 1700
HspAI	GCGC	5 cut(s)	117, 418, 588, 1180, 1630
KasI	GGCGCC	1 cut(s)	587
Ksp22I	TGATCA	2 cut(s)	514, 613
KspAI	GTTAAC	2 cut(s)	196, 1489
Kzo9I	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
LmnI	GCTCC	3 cut(s)	169, 916, 1929
Lsp1109I	GCAGC	5 cut(s)	442, 680, 1164, 1721, 1936
LweI	GCATC	6 cut(s)	352, 509, 924, 952, 1378, 2035
MaeI	CTAG	4 cut(s)	287, 444, 1316, 1878
MaeII	ACGT	3 cut(s)	112, 677, 1661
MaeIII	GTNAC	4 cut(s)	673, 1055, 1361, 1961
MalI	GATC	8 cut(s)	76, 151, 330, 382, 516, 615, 904, 1440
MboI	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
MfeI	CAATTG	1 cut(s)	1193
MflI	RGATCY	1 cut(s)	1438
MhlI	GDGCHC	2 cut(s)	913, 1512
MlsI	TGGCCA	1 cut(s)	1425
MluCI	AATT	8 cut(s)	510, 533, 725, 929, 1193, 1244, 1301, 1373
MluNI	TGGCCA	1 cut(s)	1425
Mly113I	GGCGCC	1 cut(s)	588
MlyI	GAGTC	2 cut(s)	628, 776
MmeI	TCCRAC	5 cut(s)	863, 1030, 1363, 1697, 1957
Mox20I	TGGCCA	1 cut(s)	1425
MroXI	GAANNNNTTC	2 cut(s)	1406, 1652
MscI	TGGCCA	1 cut(s)	1425
Msp20I	TGGCCA	1 cut(s)	1425
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	4 cut(s)	1293, 1481, 1888, 1953
MspR9I	CCNGG	5 cut(s)	699, 750, 983, 1022, 1889
MunI	CAATTG	1 cut(s)	1193
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	4 cut(s)	699, 750, 983, 1022
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	8 cut(s)	65, 464, 473, 668, 750, 1729, 1738, 1799
NarI	GGCGCC	1 cut(s)	588
NciI	CCSGG	1 cut(s)	1889
NdeII	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
NlaIII	CATG	5 cut(s)	1019, 1088, 1217, 1256, 1700
NlaIV	GGNNCC	4 cut(s)	589, 696, 1510, 1542
NmuCI	GTSAC	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	551
PagI	TCATGA	1 cut(s)	1084
PctI	GAATGC	1 cut(s)	744
PdmI	GAANNNNTTC	2 cut(s)	1406, 1652
PfeI	GAWTC	4 cut(s)	158, 1088, 1642, 1980
PflFI	GACNNNGTC	2 cut(s)	566, 1899
PflMI	CCANNNNNTGG	2 cut(s)	1021, 1607
PfoI	TCCNGGA	2 cut(s)	1020, 1887
PkrI	GCNGC	5 cut(s)	457, 670, 1179, 1711, 1951
PleI	GAGTC	2 cut(s)	627, 776
PluTI	GGCGCC	1 cut(s)	591
PpsI	GAGTC	2 cut(s)	627, 776
Ppu21I	YACGTR	1 cut(s)	113
Psp6I	CCWGG	4 cut(s)	697, 748, 981, 1020
PspGI	CCWGG	4 cut(s)	697, 748, 981, 1020
PspN4I	GGNNCC	4 cut(s)	589, 696, 1510, 1542
PspOMI	GGGCCC	1 cut(s)	1508
PspPI	GGNCC	3 cut(s)	1508, 1509, 1747
PsuI	RGATCY	1 cut(s)	1438
PsyI	GACNNNGTC	2 cut(s)	566, 1899
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	7 cut(s)	15, 231, 351, 448, 892, 1830, 2028
RsaNI	GTAC	7 cut(s)	14, 230, 350, 447, 891, 1829, 2027
SatI	GCNGC	5 cut(s)	456, 669, 1178, 1710, 1950
Sau3AI	GATC	8 cut(s)	74, 149, 328, 380, 514, 613, 902, 1438
Sau96I	GGNCC	3 cut(s)	1508, 1509, 1747
ScaI	AGTACT	1 cut(s)	231
SchI	GAGTC	2 cut(s)	628, 776
ScrFI	CCNGG	5 cut(s)	699, 750, 983, 1022, 1889
SduI	GDGCHC	2 cut(s)	913, 1512
SfaNI	GCATC	6 cut(s)	352, 509, 924, 952, 1378, 2035
SfcI	CTRYAG	1 cut(s)	843
SfoI	GGCGCC	1 cut(s)	589
SfuI	TTCGAA	1 cut(s)	551
SmlI	CTYRAG	3 cut(s)	233, 875, 989
SmoI	CTYRAG	3 cut(s)	233, 875, 989
SpeI	ACTAGT	1 cut(s)	1877
Sse9I	AATT	8 cut(s)	510, 533, 725, 929, 1193, 1244, 1301, 1373
SsiI	CCGC	5 cut(s)	6, 636, 1468, 1677, 1765
SspDI	GGCGCC	1 cut(s)	587
SspMI	CTAG	4 cut(s)	287, 444, 1316, 1878
StyD4I	CCNGG	5 cut(s)	697, 748, 981, 1020, 1887
StyI	CCWWGG	2 cut(s)	733, 1260
TaaI	ACNGT	6 cut(s)	566, 847, 895, 925, 1106, 1381
TaiI	ACGT	3 cut(s)	115, 680, 1664
TaqI	TCGA	6 cut(s)	28, 345, 551, 570, 649, 996
TasI	AATT	8 cut(s)	510, 533, 725, 929, 1193, 1244, 1301, 1373
TatI	WGTACW	3 cut(s)	13, 229, 349
TfiI	GAWTC	4 cut(s)	158, 1088, 1642, 1980
TscAI	CASTG	2 cut(s)	571, 852
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	5 cut(s)	455, 668, 1177, 1709, 1949
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	5 cut(s)	78, 483, 618, 843, 1073
TspGWI	ACGGA	1 cut(s)	805
TspRI	CASTG	2 cut(s)	571, 852
Tth111I	GACNNNGTC	2 cut(s)	566, 1899
Van91I	CCANNNNNTGG	2 cut(s)	1021, 1607
XapI	RAATTY	2 cut(s)	725, 1301
XmnI	GAANNNNTTC	2 cut(s)	1406, 1652
XspI	CTAG	4 cut(s)	287, 444, 1316, 1878
ZraI	GACGTC	1 cut(s)	678
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.