Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008804

Physical Location & Seq

Genomic Coordinates Forward (+)

27443872 .. 27459045

Gene Structure 15174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1181500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGGCTACCGGAAACCTCGGCGGATTTCTGGTCCTGATTTTGGCGGTTTCGATCTGCCATGCTGCTGCTTCTGTCTTCCACCCGATTTCCGACTCTCACCGGTCCGCGGCTGCGGAGCTATTTGCCCCCGTCGATGGATCGTTCGGGAGTTTAGAAGAGGCATATGAAGCCTTAAGATCGTTTGAGGTTCTTGGGATTAATAAGAAGTCCGATATACGGACCGCTACTTGTCAGTCTGTTGTTGAAAAACTCAGGTCATCGTCGTCTGCCCCAAAGGATTTGTTCTACGCCTTAAAGGTTAACGGCATTTTGGAATGCGAGGTTACAAATGAAGTATTTGAGGGCATTGCTTCAAGACTTAAAACTAATGTCAATGGTGCAAGTTCATTGCTTGAGTTGTACTACTCAATTGGAAGCTTGGTACTTATTAAGGATCAAAGTCCTGAAGTCGATGTACTTCTTGTTGATGCTGGTGGGATTTTCCATTCTATCAAGTCTCTCAGCCAGAGTGATGGAAGGTGGCGCTTCAGTTCAGATAATCCTGAGGCTAGTACCTATGCTGCTGGATTAGCTCTTGAAGCACTTTCTGGAGTTATCGTATTAGAATCTTCTGAAGTTGATCAGTCTAAGATTGGTACATTGAAAAGTGATATTTTGAAGCTTTTTGACAGTATTGAGAAATATGATGATGGGACCATTTACTTTGATGAAAAAGTTGTTGATCTGCGTGAGCATCAGAGTCCTCTTTCAACTACTGCATCAGTTATTCGAGGATTAACAGCATTTGCAACTGTGACATCTGGAAACATAAAGATTCCAGGGGACAAGATATTGGGTCTGGCAAAATTCTTCCTTGGAATTGGCATTCCTGGCAATGCTAAAGACTTTTTCAACCAAATAGACTCATTAGCGTCTTTGGAAAGCAATAAGGTCTCTATTCCTTTGGTATTATCACTTCCAGCTACAGTGCTTTCATTGACCAAGAAAGACCTGCTCCAGGTGAAAGTGAATACCGTGCTTGGTTCAAGTGCACCACCTCTGACAGTTAAGCTGGTGAAAGCATTCAGTTCTGGTTCAAAAGCTGCGTCCAAAATTGCAAGCCAGGAACTCAAGTTTGACAAAGAAAGTGGGTCCCATTTCTTGGATGTTCTGCCAGAAAGTATCGATGTTGGAAGTTACACATTTGTCTTTGAGGTGGTTCTGCATGATTCTGAAGAAGAAAATGTTTATGCAACTGGAGGGTCTACTCAAGTACAGATATTTATCACAGGAGTTATCAAAATTGAAAATGCAGAGATTGCAGTACTGGATAGTGATATTGGGAGCATAGAAACCCAGAAAAAACTAAATTTAGCCGGAGGAAGTACTGTCTCACTATCAGCTAACCACCTCCAAAAGCTGCGTCTATCCTTTCAATTGACCACTCCTTCAGGGCATGCTTTTAAGCCTCATCAGGCATTTGTTGGGCCGCAGGTATTTCTTAAGTTGACACATGAGACCAAGGTTGAACATATCTTTGTGGTGGGAATCTCTGGCCAAAAGTTTGAGAAAATACTGGATTTTCTCGGATTAGTGGAGAAGTTTTTCTATCTGTCTGGTAGTTATGACATTCAACTAACTGTTGGCGATGCTGTAATGGAAAACTCTTTCTTACGGGCTATTGGCCAGATTGATTTGGATCTACCAGAAGCACCTGAGAAGGCCTCGCACCCTCCTTCTCCAGCTGTTGATCCTTACTCAAAGTATGGGCCCAAAGCTGAGATAACCCATATCTTTAGGGTTCCAGAAAAGCGTCCTTCTCAGGAGCTCTCTCTCGTTTTCTTGGGCCTCGTGCTTTTGCCATTGATTGGATTTTTGATTGGACTATTACGCTTGGGGGTAAATCTGAAGAACTTCCCCACTTCAGCAGTACCCGCCGCCTTCGGTATCCTATTCCATGTTGGCATCGCTGCAGTTCTTTTGCTCTATGTGCTCTTCTGGTTGAAGTTGGATCTATTTACGACTCTCAAAACGCTTGGATTGTTGGGGGCCTTCTTGCTGTTTGTCGGACACCGAATTCTTTCCCACCTGGCCTCTTCGTCATCCAAGTTGAAATCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0005911 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070085 GO:0071704 GO:0071944 GO:0098588 GO:0098796 GO:0098805 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 ko04144 map00510 map00513 map01100 map04141 map04144

Pfam Domains

Protein Families

Ribophorin_II

Protein Analysis

701

Amino Acids

75.3

Weight (kDa)

5.83

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_II	PF05817	29 - 307	2.8e-59	Ribophorin II N-terminal domain
Ribophorin_II_2nd	PF23861	315 - 422	7.5e-22	Ribophorin II second domain
Ribophorin_II_3rd	PF23860	429 - 559	3.4e-35	Ribophorin II third domain
Ribophorin_II_C	PF25147	592 - 692	7e-25	Ribophorin_II, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21150 AT4G21150 AT4G21150
fragaria_vesca	FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250 FvH4_2g21250
malus_domestica	MD05G1194900.v1.1 MD10G1181500.v1.1
prunus_persica	Prupe.8G221600_v2.0.a1
pyrus_communis	pycom05g18220
rosa_chinensis	RchiOBHm_Chr6g0287811
rosa_laevigata	RLG00000012466
rosa_multiflora	Rmu_sc0003335.1_g000010 Rmu_sc0003877.1_g000006 Rmu_sc0006738.1_g000001
rosa_roxburghii	Rroxscaffold_7G00180780
rosa_rugosa	Rorug06G0191800 Rorug06G0191800
rosa_samantha	Rh6AG301700 Rh6BG307700
rosa_wichuraiana	Rw6G026060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	999, 1462
AccB7I	CCANNNNNTGG	2 cut(s)	1141, 1847
AccI	GTMKAC	1 cut(s)	1244
AccII	CGCG	1 cut(s)	107
AciI	CCGC	9 cut(s)	21, 44, 105, 107, 113, 222, 1469, 1914, 1917
AclWI	GGATC	5 cut(s)	145, 441, 1686, 1724, 1998
AcoI	YGGCCR	2 cut(s)	1534, 1663
AcsI	RAATTY	3 cut(s)	845, 1348, 2055
AcuI	CTGAAG	7 cut(s)	465, 511, 633, 1233, 1413, 1887, 1907
AfaI	GTAC	9 cut(s)	401, 423, 456, 553, 637, 1254, 1305, 1366, 1911
AfiI	CCNNNNNNNGG	7 cut(s)	40, 106, 134, 216, 997, 1141, 1847
AflII	CTTAAG	2 cut(s)	172, 1481
AgeI	ACCGGT	1 cut(s)	99
AjnI	CCWGG	5 cut(s)	817, 868, 996, 1101, 2067
Alw21I	GWGCWC	3 cut(s)	1033, 1809, 1974
Alw26I	GTCTC	4 cut(s)	501, 937, 1375, 1490
Alw44I	GTGCAC	1 cut(s)	1029
AlwI	GGATC	5 cut(s)	145, 441, 1686, 1724, 1998
AoxI	GGCC	8 cut(s)	1466, 1534, 1663, 1701, 1748, 1825, 2028, 2070
ApaI	GGGCCC	1 cut(s)	1752
ApaLI	GTGCAC	1 cut(s)	1029
ApeKI	GCWGC	7 cut(s)	62, 65, 110, 560, 1082, 1399, 1949
ApoI	RAATTY	3 cut(s)	845, 1348, 2055
ArsI	GACNNNNNNTTYG	4 cut(s)	1070, 1102, 1387, 1419
AseI	ATTAAT	1 cut(s)	198
AsiGI	ACCGGT	1 cut(s)	99
Asp700I	GAANNNNTTC	4 cut(s)	1061, 1583, 1892, 2059
AspLEI	GCGC	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	89, 1012, 1066
AvaII	GGWCC	5 cut(s)	31, 102, 219, 693, 1131
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	2 cut(s)	1033, 1752
BalI	TGGCCA	2 cut(s)	1536, 1665
BanII	GRGCYC	2 cut(s)	1752, 1809
BarI	GAAGNNNNNNTAC	4 cut(s)	438, 470, 939, 971
BauI	CACGAG	1 cut(s)	1829
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	3 cut(s)	1033, 1809, 1974
BbvI	GCAGC	7 cut(s)	49, 52, 97, 547, 1069, 1386, 1936
BccI	CCATC	3 cut(s)	128, 506, 683
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	5 cut(s)	819, 870, 998, 1103, 2069
BciVI	GTATCC	1 cut(s)	1937
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	4 cut(s)	501, 937, 1375, 1490
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	2 cut(s)	963, 1950
BfoI	RGCGCY	1 cut(s)	526
BfrI	CTTAAG	2 cut(s)	172, 1481
BfuAI	ACCTGC	2 cut(s)	999, 1462
BfuI	GTATCC	1 cut(s)	1937
BmcAI	AGTACT	2 cut(s)	1305, 1366
Bme1390I	CCNGG	5 cut(s)	819, 870, 998, 1103, 2069
Bme18I	GGWCC	5 cut(s)	31, 102, 219, 693, 1131
BmiI	GGNNCC	6 cut(s)	694, 1132, 1133, 1750, 1782, 2029
BmrFI	CCNGG	5 cut(s)	819, 870, 998, 1103, 2069
BmsI	GCATC	5 cut(s)	457, 742, 767, 1618, 1953
BpiI	GAAGAC	1 cut(s)	67
BplI	GAGNNNNNCTC	2 cut(s)	1688, 1720
BpmI	CTGGAG	4 cut(s)	609, 980, 1257, 1704
BpuEI	CTTGAG	3 cut(s)	413, 1094, 1233
Bsa29I	ATCGAT	1 cut(s)	1164
BsaBI	GATNNNNATC	2 cut(s)	1262, 1677
BsaI	GGTCTC	2 cut(s)	937, 1490
BsaJI	CCNNGG	5 cut(s)	16, 105, 818, 853, 1500
BsaWI	WCCGGW	2 cut(s)	8, 99
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 106, 134, 216, 997, 1141, 1847
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	3 cut(s)	1240, 1311, 1560
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	3 cut(s)	345, 386, 880
Bse8I	GATNNNNATC	2 cut(s)	1262, 1677
BseBI	CCWGG	5 cut(s)	819, 870, 998, 1103, 2069
BseCI	ATCGAT	1 cut(s)	1164
BseDI	CCNNGG	5 cut(s)	16, 105, 818, 853, 1500
BseGI	GGATG	2 cut(s)	1150, 2081
BseJI	GATNNNNATC	2 cut(s)	1262, 1677
BseLI	CCNNNNNNNGG	7 cut(s)	40, 106, 134, 216, 997, 1141, 1847
BseMI	GCAATG	3 cut(s)	345, 386, 880
BseMII	CTCAG	6 cut(s)	265, 514, 534, 1686, 1749, 1814
BseNI	ACTGG	3 cut(s)	1240, 1311, 1560
BseSI	GKGCMC	2 cut(s)	1033, 1752
BseXI	GCAGC	7 cut(s)	49, 52, 97, 547, 1069, 1386, 1936
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	8 cut(s)	1468, 1536, 1665, 1703, 1750, 1827, 2030, 2072
BshTI	ACCGGT	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	1164
BsiHKAI	GWGCWC	3 cut(s)	1033, 1809, 1974
BsiSI	CCGG	3 cut(s)	9, 100, 1356
BslFI	GGGAC	3 cut(s)	706, 836, 1117
BslI	CCNNNNNNNGG	7 cut(s)	40, 106, 134, 216, 997, 1141, 1847
BsmAI	GTCTC	4 cut(s)	501, 937, 1375, 1490
BsmFI	GGGAC	3 cut(s)	706, 836, 1117
BsmI	GAATGC	3 cut(s)	320, 864, 1061
BsnI	GGCC	8 cut(s)	1468, 1536, 1665, 1703, 1750, 1827, 2030, 2072
Bso31I	GGTCTC	2 cut(s)	937, 1490
Bsp120I	GGGCCC	1 cut(s)	1748
Bsp1286I	GDGCHC	4 cut(s)	1033, 1752, 1809, 1974
Bsp143I	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
BspACI	CCGC	9 cut(s)	21, 44, 105, 107, 113, 222, 1469, 1914, 1917
BspANI	GGCC	8 cut(s)	1468, 1536, 1665, 1703, 1750, 1827, 2030, 2072
BspCNI	CTCAG	6 cut(s)	264, 513, 535, 1687, 1750, 1813
BspDI	ATCGAT	1 cut(s)	1164
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	6 cut(s)	694, 1132, 1133, 1750, 1782, 2029
BspMAI	CTGCAG	1 cut(s)	1954
BspMI	ACCTGC	2 cut(s)	999, 1462
BspPI	GGATC	5 cut(s)	145, 441, 1686, 1724, 1998
BspQI	GCTCTTC	1 cut(s)	1979
BspTI	CTTAAG	2 cut(s)	172, 1481
BspTNI	GGTCTC	2 cut(s)	937, 1490
BsrDI	GCAATG	3 cut(s)	345, 386, 880
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	3 cut(s)	1240, 1311, 1560
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	5 cut(s)	16, 105, 818, 853, 1500
BssMI	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
BssSI	CACGAG	1 cut(s)	1829
BssT1I	CCWWGG	2 cut(s)	853, 1500
Bst2BI	CACGAG	1 cut(s)	1829
Bst2UI	CCWGG	5 cut(s)	819, 870, 998, 1103, 2069
Bst4CI	ACNGT	7 cut(s)	671, 793, 967, 1015, 1045, 1369, 1621
Bst6I	CTCTTC	3 cut(s)	150, 1979, 2080
BstAFI	CTTAAG	2 cut(s)	172, 1481
BstAPI	GCANNNNNTGC	1 cut(s)	1298
BstC8I	GCNNGC	2 cut(s)	1099, 1437
BstDEI	CTNAG	7 cut(s)	251, 500, 543, 627, 1695, 1758, 1800
BstDSI	CCRYGG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	995
BstF5I	GGATG	2 cut(s)	1150, 2081
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	9 cut(s)	54, 140, 179, 436, 622, 724, 1681, 1732, 1993
BstMAI	GTCTC	4 cut(s)	501, 937, 1375, 1490
BstMBI	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 569, 578, 870, 1298, 1913, 1969
BstNI	CCWGG	5 cut(s)	819, 870, 998, 1103, 2069
BstNSI	RCATGY	1 cut(s)	1439
BstSCI	CCNGG	5 cut(s)	817, 868, 996, 1101, 2067
BstSFI	CTRYAG	2 cut(s)	963, 1950
BstSLI	GKGCMC	2 cut(s)	1033, 1752
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	7 cut(s)	49, 52, 97, 547, 1069, 1386, 1936
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	2 cut(s)	1678, 1990
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	2 cut(s)	1678, 1990
Bsu15I	ATCGAT	1 cut(s)	1164
Bsu36I	CCTNAGG	1 cut(s)	543
BsuI	GTATCC	1 cut(s)	1937
BsuRI	GGCC	8 cut(s)	1468, 1536, 1665, 1703, 1750, 1827, 2030, 2072
BsuTUI	ATCGAT	1 cut(s)	1164
BtgI	CCRYGG	1 cut(s)	105
BtgZI	GCGATG	2 cut(s)	1641, 1930
BtsCI	GGATG	2 cut(s)	1150, 2081
BtsIMutI	CAGTG	1 cut(s)	972
BveI	ACCTGC	2 cut(s)	999, 1462
Cac8I	GCNNGC	2 cut(s)	1099, 1437
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	99
Cfr42I	CCGCGG	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	1164
CpoI	CGGWCCG	2 cut(s)	102, 219
CseI	GACGC	4 cut(s)	900, 1074, 1391, 1781
Csp6I	GTAC	9 cut(s)	400, 422, 455, 552, 636, 1253, 1304, 1365, 1910
CspAI	ACCGGT	1 cut(s)	99
CspCI	CAANNNNNGTGG	2 cut(s)	1108, 1143
CspI	CGGWCCG	2 cut(s)	102, 219
CviAII	CATG	5 cut(s)	59, 1205, 1436, 1493, 1937
CviQI	GTAC	9 cut(s)	400, 422, 455, 552, 636, 1253, 1304, 1365, 1910
DdeI	CTNAG	7 cut(s)	251, 500, 543, 627, 1695, 1758, 1800
DpnI	GATC	9 cut(s)	53, 139, 178, 435, 621, 723, 1680, 1731, 1992
DpnII	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
EaeI	YGGCCR	2 cut(s)	1534, 1663
Eam1104I	CTCTTC	3 cut(s)	150, 1979, 2080
EarI	CTCTTC	3 cut(s)	150, 1979, 2080
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	1807
Eco130I	CCWWGG	2 cut(s)	853, 1500
Eco147I	AGGCCT	1 cut(s)	1703
Eco24I	GRGCYC	2 cut(s)	1752, 1809
Eco31I	GGTCTC	2 cut(s)	937, 1490
Eco47I	GGWCC	5 cut(s)	31, 102, 219, 693, 1131
Eco53kI	GAGCTC	1 cut(s)	1807
Eco57I	CTGAAG	7 cut(s)	465, 511, 633, 1233, 1413, 1887, 1907
Eco81I	CCTNAGG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	1807
EcoNI	CCTNNNNNAGG	1 cut(s)	995
EcoO109I	RGGNCCY	2 cut(s)	1131, 2028
EcoRI	GAATTC	1 cut(s)	2055
EcoRII	CCWGG	5 cut(s)	817, 868, 996, 1101, 2067
EcoT14I	CCWWGG	2 cut(s)	853, 1500
EcoT38I	GRGCYC	2 cut(s)	1752, 1809
ErhI	CCWWGG	2 cut(s)	853, 1500
FaeI	CATG	5 cut(s)	62, 1208, 1439, 1496, 1940
FaqI	GGGAC	3 cut(s)	706, 836, 1117
FatI	CATG	5 cut(s)	58, 1204, 1435, 1492, 1936
FauI	CCCGC	1 cut(s)	1921
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	1244
FokI	GGATG	2 cut(s)	1157, 2068
FriOI	GRGCYC	2 cut(s)	1752, 1809
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	524
GsuI	CTGGAG	4 cut(s)	609, 980, 1257, 1704
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	8 cut(s)	1468, 1536, 1665, 1703, 1750, 1827, 2030, 2072
HapII	CCGG	3 cut(s)	9, 100, 1356
HgaI	GACGC	4 cut(s)	900, 1074, 1391, 1781
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	5 cut(s)	62, 1208, 1439, 1496, 1940
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	2 cut(s)	301, 1488
HindII	GTYRAC	2 cut(s)	301, 1488
HindIII	AAGCTT	2 cut(s)	415, 659
HinfI	GANTC	8 cut(s)	92, 605, 739, 814, 902, 1208, 1527, 2002
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	3 cut(s)	9, 100, 1356
HphI	GGTGA	3 cut(s)	89, 1012, 1066
Hpy166II	GTNNAC	4 cut(s)	301, 1031, 1245, 1488
Hpy8I	GTNNAC	4 cut(s)	301, 1031, 1245, 1488
Hpy99I	CGWCG	2 cut(s)	134, 265
HpyAV	CCTTC	7 cut(s)	510, 1437, 1693, 1725, 1806, 1930, 2041
HpyCH4III	ACNGT	7 cut(s)	671, 793, 967, 1015, 1045, 1369, 1621
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 569, 578, 870, 1298, 1913, 1969
HpyF3I	CTNAG	7 cut(s)	251, 500, 543, 627, 1695, 1758, 1800
Hsp92II	CATG	5 cut(s)	62, 1208, 1439, 1496, 1940
HspAI	GCGC	1 cut(s)	523
KflI	GGGWCCC	1 cut(s)	1131
Ksp22I	TGATCA	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	301
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
LguI	GCTCTTC	1 cut(s)	1979
LmnI	GCTCC	4 cut(s)	115, 999, 1323, 1804
Lsp1109I	GCAGC	7 cut(s)	49, 52, 97, 547, 1069, 1386, 1936
LweI	GCATC	5 cut(s)	457, 742, 767, 1618, 1953
MaeI	CTAG	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	322, 793, 1175
MalI	GATC	9 cut(s)	53, 139, 178, 435, 621, 723, 1680, 1731, 1992
MboI	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
MboII	GAAGA	9 cut(s)	67, 167, 600, 841, 1226, 1229, 1900, 1966, 2067
MfeI	CAATTG	2 cut(s)	408, 1415
MflI	RGATCY	2 cut(s)	1678, 1990
MhlI	GDGCHC	4 cut(s)	1033, 1752, 1809, 1974
MlsI	TGGCCA	2 cut(s)	1536, 1665
MluCI	AATT	8 cut(s)	408, 845, 858, 1092, 1281, 1348, 1415, 2055
MluNI	TGGCCA	2 cut(s)	1536, 1665
MlyI	GAGTC	4 cut(s)	86, 748, 896, 1996
MmeI	TCCRAC	4 cut(s)	114, 1150, 1968, 2026
Mox20I	TGGCCA	2 cut(s)	1536, 1665
MroXI	GAANNNNTTC	4 cut(s)	1061, 1583, 1892, 2059
MscI	TGGCCA	2 cut(s)	1536, 1665
Msp20I	TGGCCA	2 cut(s)	1536, 1665
MspA1I	CMGCKG	2 cut(s)	107, 1724
MspCI	CTTAAG	2 cut(s)	172, 1481
MspI	CCGG	3 cut(s)	9, 100, 1356
MspR9I	CCNGG	5 cut(s)	819, 870, 998, 1103, 2069
MunI	CAATTG	2 cut(s)	408, 1415
Mva1269I	GAATGC	3 cut(s)	320, 864, 1061
MvaI	CCWGG	5 cut(s)	819, 870, 998, 1103, 2069
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	7 cut(s)	167, 569, 578, 870, 1298, 1913, 1969
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
NlaIII	CATG	5 cut(s)	62, 1208, 1439, 1496, 1940
NlaIV	GGNNCC	6 cut(s)	694, 1132, 1133, 1750, 1782, 2029
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	1439
PaeI	GCATGC	1 cut(s)	1439
PceI	AGGCCT	1 cut(s)	1703
PciSI	GCTCTTC	1 cut(s)	1979
PctI	GAATGC	3 cut(s)	320, 864, 1061
PdmI	GAANNNNTTC	4 cut(s)	1061, 1583, 1892, 2059
PfeI	GAWTC	4 cut(s)	605, 814, 1208, 1527
PflMI	CCANNNNNTGG	2 cut(s)	1141, 1847
PinAI	ACCGGT	1 cut(s)	99
PleI	GAGTC	4 cut(s)	86, 747, 896, 1996
PpsI	GAGTC	4 cut(s)	86, 747, 896, 1996
PpuMI	RGGWCCY	1 cut(s)	1131
PshBI	ATTAAT	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	1809
Psp5II	RGGWCCY	1 cut(s)	1131
Psp6I	CCWGG	5 cut(s)	817, 868, 996, 1101, 2067
PspGI	CCWGG	5 cut(s)	817, 868, 996, 1101, 2067
PspN4I	GGNNCC	6 cut(s)	694, 1132, 1133, 1750, 1782, 2029
PspOMI	GGGCCC	1 cut(s)	1748
PspPPI	RGGWCCY	1 cut(s)	1131
PstI	CTGCAG	1 cut(s)	1954
PsuI	RGATCY	2 cut(s)	1678, 1990
PvuII	CAGCTG	1 cut(s)	1724
RsaI	GTAC	9 cut(s)	401, 423, 456, 553, 637, 1254, 1305, 1366, 1911
RsaNI	GTAC	9 cut(s)	400, 422, 455, 552, 636, 1253, 1304, 1365, 1910
Rsr2I	CGGWCCG	2 cut(s)	102, 219
RsrII	CGGWCCG	2 cut(s)	102, 219
SacI	GAGCTC	1 cut(s)	1809
SacII	CCGCGG	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	1979
Sau3AI	GATC	9 cut(s)	51, 137, 176, 433, 619, 721, 1678, 1729, 1990
ScaI	AGTACT	2 cut(s)	1305, 1366
SchI	GAGTC	4 cut(s)	86, 748, 896, 1996
ScrFI	CCNGG	5 cut(s)	819, 870, 998, 1103, 2069
SduI	GDGCHC	4 cut(s)	1033, 1752, 1809, 1974
SfaNI	GCATC	5 cut(s)	457, 742, 767, 1618, 1953
SfcI	CTRYAG	2 cut(s)	963, 1950
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SinI	GGWCC	5 cut(s)	31, 102, 219, 693, 1131
SmlI	CTYRAG	5 cut(s)	172, 392, 1109, 1248, 1481
SmoI	CTYRAG	5 cut(s)	172, 392, 1109, 1248, 1481
SphI	GCATGC	1 cut(s)	1439
Sse9I	AATT	8 cut(s)	408, 845, 858, 1092, 1281, 1348, 1415, 2055
SseBI	AGGCCT	1 cut(s)	1703
SsiI	CCGC	9 cut(s)	21, 44, 105, 107, 113, 222, 1469, 1914, 1917
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	1809
StuI	AGGCCT	1 cut(s)	1703
StyD4I	CCNGG	5 cut(s)	817, 868, 996, 1101, 2067
StyI	CCWWGG	2 cut(s)	853, 1500
TaaI	ACNGT	7 cut(s)	671, 793, 967, 1015, 1045, 1369, 1621
TaqI	TCGA	5 cut(s)	50, 132, 450, 769, 1164
TasI	AATT	8 cut(s)	408, 845, 858, 1092, 1281, 1348, 1415, 2055
TatI	WGTACW	5 cut(s)	399, 454, 1252, 1303, 1364
TauI	GCSGC	3 cut(s)	110, 1471, 1919
TfiI	GAWTC	4 cut(s)	605, 814, 1208, 1527
TscAI	CASTG	1 cut(s)	972
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	7 cut(s)	62, 65, 110, 560, 1082, 1399, 1949
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	180, 345, 375, 723, 963
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	972
Van91I	CCANNNNNTGG	2 cut(s)	1141, 1847
Vha464I	CTTAAG	2 cut(s)	172, 1481
VneI	GTGCAC	1 cut(s)	1029
VpaK11BI	GGWCC	5 cut(s)	31, 102, 219, 693, 1131
VspI	ATTAAT	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	995
XapI	RAATTY	3 cut(s)	845, 1348, 2055
XceI	RCATGY	1 cut(s)	1439
XmiI	GTMKAC	1 cut(s)	1244
XmnI	GAANNNNTTC	4 cut(s)	1061, 1583, 1892, 2059
XspI	CTAG	1 cut(s)	549
ZrmI	AGTACT	2 cut(s)	1305, 1366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.