Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005874

Physical Location & Seq

Genomic Coordinates Forward (+)

33191736 .. 33195102

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1202600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTCGTAATTGAATGTGCTGGAGCTGGTGACATAGTGTCAATGGCGGGGTTAACAAGCCGCCCTTCTATTGGCCATACAGTTGCAAGCGTTGAGACTATGACTGCATTGCCCACAGTTGTGTTGGATCCACCAACTATTTCCATGACTTTTGGTGTCAATGACTCTCCCTTAGCTGGTCGTGACGGTACCCATTGTATGGGGAAGGTGCGGGTTCGTGAGACGGGTGCTTCCTCTCTCAGATCGACCACAAGACAGGCAAGCCCTGACGGAGGAAGTGGCAACCCTAAAAGGTCAGCTTGCGGCCCAAGAAGCAGCTCGGGAAGCCGAGATTGCAGCCCAGTTATTGGCCCAGGACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

121

Amino Acids

12.1

Weight (kDa)

8.93

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31060 AT2G31060 AT2G31060
fragaria_vesca	FvH4_6g26910 FvH4_6g26910 FvH4_6g26910 FvH4_6g26910 FvH4_6g26910
malus_domestica	MD05G1202600.v1.1 MD09G1241200.v1.1
prunus_persica	Prupe.3G126600_v2.0.a1 Prupe.3G126600_v2.0.a1 Prupe.3G126600_v2.0.a1 Prupe.3G126600_v2.0.a1
pyrus_communis	pycom09g15990 pycom11g16100 pycom17g23730
rosa_chinensis	RchiOBHm_Chr2g0128661
rosa_laevigata	RLG00000019015
rosa_multiflora	Rmu_sc0003465.1_g000048
rosa_roxburghii	Rroxscaffold_2G00115410 Rroxscaffold_2G00115890
rosa_rugosa	Rorug02G0279700
rosa_samantha	Rh2BG341000 Rh2CG319800 Rh2DG357600
rosa_wichuraiana	Rw2G026900 Rw2G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	188
AccB7I	CCANNNNNTGG	2 cut(s)	199, 347
AciI	CCGC	4 cut(s)	47, 61, 211, 303
AclWI	GGATC	2 cut(s)	122, 135
AcoI	YGGCCR	1 cut(s)	73
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	5 cut(s)	71, 176, 199, 272, 347
AgsI	TTSAA	1 cut(s)	14
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	4 cut(s)	26, 176, 299, 318
AluI	AGCT	4 cut(s)	26, 176, 299, 318
Alw26I	GTCTC	2 cut(s)	89, 215
AlwI	GGATC	2 cut(s)	122, 135
Ama87I	CYCGRG	1 cut(s)	319
AoxI	GGCC	3 cut(s)	73, 304, 349
ApeKI	GCWGC	2 cut(s)	315, 336
Asp718I	GGTACC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	305, 350
AsuHPI	GGTGA	1 cut(s)	41
AvaI	CYCGRG	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	75
BamHI	GGATCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	327, 348
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	89, 215
BisI	GCNGC	4 cut(s)	61, 304, 316, 337
BlsI	GCNGC	4 cut(s)	62, 305, 317, 338
Bme1390I	CCNGG	1 cut(s)	354
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	305, 350
BmiI	GGNNCC	2 cut(s)	129, 190
BmrFI	CCNGG	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 176, 199, 272, 347
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	352
BseLI	CCNNNNNNNGG	5 cut(s)	71, 176, 199, 272, 347
BseMI	GCAATG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	327, 348
BshFI	GGCC	3 cut(s)	75, 306, 351
BshNI	GGYRCC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	319
BslI	CCNNNNNNNGG	5 cut(s)	71, 176, 199, 272, 347
BsmAI	GTCTC	2 cut(s)	89, 215
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	3 cut(s)	75, 306, 351
BsoBI	CYCGRG	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	127, 242
BspACI	CCGC	4 cut(s)	47, 61, 211, 303
BspANI	GGCC	3 cut(s)	75, 306, 351
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	2 cut(s)	129, 190
BspPI	GGATC	2 cut(s)	122, 135
BspT107I	GGYRCC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	352
BssMI	GATC	2 cut(s)	127, 242
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	82, 118, 188
BstC8I	GCNNGC	3 cut(s)	88, 262, 301
BstDEI	CTNAG	2 cut(s)	172, 239
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	130, 245
BstMAI	GTCTC	2 cut(s)	89, 215
BstMBI	GATC	2 cut(s)	127, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	312, 324, 333
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	327, 348
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	75, 306, 351
Cac8I	GCNNGC	3 cut(s)	88, 262, 301
Cfr13I	GGNCC	2 cut(s)	305, 350
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	145
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	2 cut(s)	172, 239
DpnI	GATC	2 cut(s)	129, 244
DpnII	GATC	2 cut(s)	127, 242
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	1 cut(s)	148
FaiI	YATR	5 cut(s)	35, 78, 101, 146, 200
FalI	AAGNNNNNCTT	4 cut(s)	49, 81, 283, 315
FatI	CATG	1 cut(s)	144
FauI	CCCGC	2 cut(s)	40, 204
Fnu4HI	GCNGC	4 cut(s)	61, 304, 316, 337
Fsp4HI	GCNGC	4 cut(s)	61, 304, 316, 337
GluI	GCNGC	4 cut(s)	61, 304, 316, 337
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	75, 306, 351
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	164
HpaI	GTTAAC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	242
Hpy188III	TCNNGA	3 cut(s)	182, 218, 321
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	75, 199
HpyCH4III	ACNGT	3 cut(s)	82, 118, 188
HpyCH4V	TGCA	3 cut(s)	86, 107, 336
HpyF10VI	GCNNNNNNNGC	3 cut(s)	312, 324, 333
HpyF3I	CTNAG	2 cut(s)	172, 239
Hsp92II	CATG	1 cut(s)	148
KpnI	GGTACC	1 cut(s)	192
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	127, 242
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	7 cut(s)	6, 12, 162, 242, 279, 339, 354
Lsp1109I	GCAGC	2 cut(s)	327, 348
MaeIII	GTNAC	2 cut(s)	29, 182
MalI	GATC	2 cut(s)	129, 244
MboI	GATC	2 cut(s)	127, 242
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	75
MluCI	AATT	1 cut(s)	9
MluNI	TGGCCA	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	2 cut(s)	244, 266
Mox20I	TGGCCA	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	75
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	312, 324, 333
NdeII	GATC	2 cut(s)	127, 242
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	129, 190
NmeAIII	GCCGAG	1 cut(s)	353
NmuCI	GTSAC	2 cut(s)	29, 182
OliI	CACNNNNGTG	1 cut(s)	119
PflMI	CCANNNNNTGG	2 cut(s)	199, 347
PkrI	GCNGC	4 cut(s)	62, 305, 317, 338
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	2 cut(s)	129, 190
PspPI	GGNCC	2 cut(s)	305, 350
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	4 cut(s)	61, 304, 316, 337
Sau3AI	GATC	2 cut(s)	127, 242
Sau96I	GGNCC	2 cut(s)	305, 350
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	6 cut(s)	28, 178, 210, 296, 301, 320
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	4 cut(s)	47, 61, 211, 303
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	3 cut(s)	82, 118, 188
TaqI	TCGA	1 cut(s)	245
TasI	AATT	1 cut(s)	9
TauI	GCSGC	2 cut(s)	63, 306
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TseFI	GTSAC	2 cut(s)	29, 182
TseI	GCWGC	2 cut(s)	315, 336
Tsp45I	GTSAC	2 cut(s)	29, 182
TspGWI	ACGGA	1 cut(s)	285
Van91I	CCANNNNNTGG	2 cut(s)	199, 347
XagI	CCTNNNNNAGG	1 cut(s)	270
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.