Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005874

Physical Location & Seq

Genomic Coordinates Forward (+)

30188243 .. 30188944

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0279700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATTGGCCCCAAAGGTTCAGGGCTAGAGAACTGGGATCCCTCTTCTCATTACTACTGCTCCTTCTCTGGAGTTTCATGTGACCACCAATCACGAGTTGTTGCTCTCAACGTGTCCGGTTTGCCTCTGTTTGGGTCGATTCCAGCAGAGATTGGGCTTCTGAACAAACTCGTCAACCTCACCATTGCCGACAACAACTTCACAGGGAAGCTTCCTCTTGAGATGGCCAACCTGACTTGTTTAAAGCTCTTGAACATCTCCAACAACTTGTTCGTTGGAAAATTTCCCGGAGAAATGACGCTCAGAATGACAGAGCTTGAGGTTCTTGACGCCTATAATAACAACTACAATGGCCCACTTCCGGTAGAGCTCGTCAATCTCAAAAAGCTCAAATATCTGCATCTTGGCGGGAACTACTTCAGGGGAGAAATTCCGAATAGTTATTCAGAGATTCAAAGCTTGGAGTATCTGGGCCTCAACGGTATCGGGCTCGACGGAAAGTTCCCTTCCAGCTTGGCTCGGCTAAAGAATATGAAAGAATTGTACGTTGGTTACTACAATACTTATAGCGGTGGAATTCCAACTGAGTTGGGAACGATGCAGTCCTTGCAAGTGCTTGACATGACCAGCTGTAACCTCACCGGCAAGATTCCCGTCAATCTAGGCTTTTTGAAGAACCTACGCAAGTTGAGTTGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C GTP_EFTU GTP_EFTU_D2

Protein Analysis

233

Amino Acids

25.65

Weight (kDa)

7.59

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	45 - 134	2.8e-06	Leucine-rich repeat region
LRR_14	PF23598	124 - 232	5.7e-13	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31060 AT2G31060 AT2G31060
fragaria_vesca	FvH4_6g26910 FvH4_6g26910 FvH4_6g26910 FvH4_6g26910 FvH4_6g26910
malus_domestica	MD05G1202600.v1.1 MD09G1241200.v1.1
prunus_persica	Prupe.3G126600_v2.0.a1 Prupe.3G126600_v2.0.a1 Prupe.3G126600_v2.0.a1 Prupe.3G126600_v2.0.a1
pyrus_communis	pycom09g15990 pycom11g16100 pycom17g23730
rosa_chinensis	RchiOBHm_Chr2g0128661
rosa_laevigata	RLG00000019015
rosa_multiflora	Rmu_sc0003465.1_g000048
rosa_roxburghii	Rroxscaffold_2G00115410 Rroxscaffold_2G00115890
rosa_rugosa	Rorug02G0279700
rosa_samantha	Rh2BG341000 Rh2CG319800 Rh2DG357600
rosa_wichuraiana	Rw2G026900 Rw2G027160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	408, 570
AclWI	GGATC	2 cut(s)	32, 45
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	281, 429, 576
AcuI	CTGAAG	1 cut(s)	403
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	2 cut(s)	131, 361
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	253, 455, 673
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 531, 563
AluBI	AGCT	8 cut(s)	211, 247, 316, 370, 388, 459, 513, 630
AluI	AGCT	8 cut(s)	211, 247, 316, 370, 388, 459, 513, 630
Alw21I	GWGCWC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	32, 45
AoxI	GGCC	4 cut(s)	7, 225, 352, 472
ApoI	RAATTY	3 cut(s)	281, 429, 576
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	3 cut(s)	8, 353, 472
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	172, 631
BalI	TGGCCA	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	372, 492
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	372
BccI	CCATC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	288
BfaI	CTAG	2 cut(s)	26, 662
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	3 cut(s)	8, 353, 472
BmiI	GGNNCC	2 cut(s)	10, 39
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	409, 588
BmuI	ACTGGG	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	239, 338
BpuMI	CCSGG	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	330
BsaWI	WCCGGW	2 cut(s)	116, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 361
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	131, 361
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	316, 576
BseNI	ACTGG	1 cut(s)	38
BshFI	GGCC	4 cut(s)	9, 227, 354, 474
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	4 cut(s)	117, 288, 362, 642
BslI	CCNNNNNNNGG	2 cut(s)	131, 361
BsnI	GGCC	4 cut(s)	9, 227, 354, 474
Bsp1286I	GDGCHC	2 cut(s)	372, 492
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	2 cut(s)	408, 570
BspANI	GGCC	4 cut(s)	9, 227, 354, 474
BspCNI	CTCAG	2 cut(s)	315, 577
BspLI	GGNNCC	2 cut(s)	10, 39
BspPI	GGATC	2 cut(s)	32, 45
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	641
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	330
BssSI	CACGAG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	330
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstDEI	CTNAG	2 cut(s)	302, 585
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstSCI	CCNGG	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	4 cut(s)	9, 227, 354, 474
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	3 cut(s)	8, 353, 472
CseI	GACGC	2 cut(s)	307, 338
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	2 cut(s)	78, 622
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	302, 585
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	372, 492
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	576
EcoT38I	GRGCYC	2 cut(s)	372, 492
FaeI	CATG	2 cut(s)	81, 625
FaiI	YATR	5 cut(s)	79, 336, 533, 567, 623
FatI	CATG	2 cut(s)	77, 621
FauI	CCCGC	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	372, 492
FspBI	CTAG	2 cut(s)	26, 662
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	4 cut(s)	9, 227, 354, 474
HapII	CCGG	4 cut(s)	117, 288, 362, 642
HgaI	GACGC	2 cut(s)	307, 338
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	81, 625
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	2 cut(s)	209, 457
HinfI	GANTC	3 cut(s)	139, 451, 649
HpaII	CCGG	4 cut(s)	117, 288, 362, 642
HphI	GGTGA	2 cut(s)	172, 631
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	4 cut(s)	162, 305, 435, 448
Hpy188III	TCNNGA	5 cut(s)	69, 93, 218, 250, 326
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	2 cut(s)	73, 516
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	2 cut(s)	111, 546
HpyCH4V	TGCA	3 cut(s)	400, 601, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	2 cut(s)	302, 585
HpySE526I	ACGT	2 cut(s)	111, 546
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	81, 625
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	65
LweI	GCATC	2 cut(s)	409, 588
MaeI	CTAG	2 cut(s)	26, 662
MaeII	ACGT	2 cut(s)	111, 546
MaeIII	GTNAC	3 cut(s)	80, 551, 632
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	36, 685
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	372, 492
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	4 cut(s)	281, 429, 539, 576
MluNI	TGGCCA	1 cut(s)	227
MmeI	TCCRAC	3 cut(s)	256, 285, 605
MnlI	CCTC	7 cut(s)	52, 135, 188, 225, 313, 485, 647
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	4 cut(s)	117, 288, 362, 642
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	2 cut(s)	81, 625
NlaIV	GGNNCC	2 cut(s)	10, 39
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	139, 451, 649
PfoI	TCCNGGA	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	10, 39
PspPI	GGNCC	3 cut(s)	8, 353, 472
PsuI	RGATCY	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	630
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	3 cut(s)	8, 353, 472
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	372, 492
SfaNI	GCATC	2 cut(s)	409, 588
SmlI	CTYRAG	2 cut(s)	218, 317
SmoI	CTYRAG	2 cut(s)	218, 317
Sse9I	AATT	4 cut(s)	281, 429, 539, 576
SsiI	CCGC	2 cut(s)	408, 570
SspMI	CTAG	2 cut(s)	26, 662
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	2 cut(s)	114, 549
TaqI	TCGA	2 cut(s)	137, 492
TasI	AATT	4 cut(s)	281, 429, 539, 576
TfiI	GAWTC	3 cut(s)	139, 451, 649
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseFI	GTSAC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	66, 548
TspGWI	ACGGA	1 cut(s)	510
XapI	RAATTY	3 cut(s)	281, 429, 576
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	26, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.