Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0019276

Physical Location & Seq

Genomic Coordinates Reverse (-)

38513692 .. 38516051

Gene Structure 2360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1254600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCTGCCAATGCCATGACCACCGCCTTCAAGGCAAACACAGAGTTGTCTCGTTGTGTTAAATCTTCGCTAAGACCCTCCTCCTCCAAAGCCAACCCTAATGAAGCCCAACTATGCAGACTGCCAATCGGACTTCCCTTCAACAACTTCTCCTCCGGTCTCTCTCTGACTTCGGCCGGTAATATTTCACAGAGCAGACGCGTAATGTCAGTGTCGAAGAACAACGAGTCCTCCAATGATTTTAGTGCTAGCCGACGTGGTGATGACAGTTGGACGTACAAGGATGCTGGTGTAGATATAGATGCTGGGATGGCACTTGTTGATATAATTAAACAGGAGGATCCTGAAATTGGGTCATTTGGGGGTATTGTCCAAGATGAGATTCTCGATGATGTATGCCTCGTTCACGGTACAGACGGTGTTGGAACGAAACTTAAGCTTGCATTTGAGACTGGAAATCATGAAACCATTGGTATTGATTTGGTTGCCATGAATGTCAATGATATCGTTACTCTTGGGGCTAAGCCAGTATCTTTTCAAGATTACTTTGCTACAGGCCGCCTTGATGTTGATATTGCTGCAAAGGTTATAAAAGGTATTCGTAATGGTTGCAAACAATCTGGCTGTAAACTTTCGGGCGGAGAGACTGCCGAGATGCCAGGTTTTTATAAAGATGGCGAGTATGACCTGGGTGGCTCTGCTGTTGGAGTTGTGAAAAAGGGATCTATCATTGATGGGAAAAACATTGTGGCTGGAGATGTTCTCATTGGCCTACCGTCTAGTGGGGTTCATTCTAATGGTTTCTCTCTTGTGAGAAGGGTTCTGGCTGATAGTGGGCTTTCTCTCAAGGACCAACTACCTGGTGGAGAAGCTATCACATTAGGTGAAGCTTTGATGGTCCCAACTGTGATATATGTTAAGCAGGTGCTCGACTTAATAAGGAAGGGAGGTGTCAAAGGAGTAGCTCACATCACAGGGGGTGGTCTCACAGAAAATATACCTCGAGTGTTCCCGAAAGGCCTAGGGGCTGTCATTTATAAAGATTCATGGGAAGTCCCACCTGTTTTCAAGTGGATCCAAGAAGCTGGACGGATTAAAGATGCTGAGATGAAACGAACTTTTAACATGGGTATTGGAATGGTTCTTGTTGTGAGTCAGGAGGCGTCCCACAGAATACTTGGGGAGGATGGAAATGTAGCTGCCTATAAAGCTTACCACATTGGTGAAGTAGCAAGCGGTGTTGAGGGAGTGATTTATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

421

Amino Acids

44.37

Weight (kDa)

5.79

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIRS	PF00586	130 - 238	1.7e-23	AIR synthase related protein, N-terminal domain
AIRS_C	PF02769	251 - 417	1e-35	AIR synthase related protein, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019276)

Species	Orthologous Gene IDs
malus_domestica	MD05G1254600.v1.1 MD08G1193800.v1.1 MD08G1194800.v1.1 MD08G1195000.v1.1 MD08G1195100.v1.1 MD15G1382500.v1.1
pyrus_communis	pycom05g23260 pycom08g16740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	590, 669, 1038
AarI	CACCTGC	1 cut(s)	913
Acc36I	ACCTGC	1 cut(s)	913
AccII	CGCG	1 cut(s)	201
AciI	CCGC	4 cut(s)	24, 559, 639, 1236
AclWI	GGATC	5 cut(s)	335, 348, 730, 1069, 1082
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	1163
AfaI	GTAC	2 cut(s)	278, 412
AfiI	CCNNNNNNNGG	2 cut(s)	350, 782
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	31, 142, 539, 1069
AjiI	CACGTC	1 cut(s)	257
AjnI	CCWGG	3 cut(s)	658, 687, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AleI	CACNNNNGTG	1 cut(s)	1221
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	7 cut(s)	439, 872, 890, 965, 1085, 1199, 1211
AluI	AGCT	7 cut(s)	439, 872, 890, 965, 1085, 1199, 1211
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	5 cut(s)	54, 164, 443, 638, 989
AlwI	GGATC	5 cut(s)	335, 348, 730, 1069, 1082
Ama87I	CYCGRG	1 cut(s)	1002
AoxI	GGCC	4 cut(s)	174, 556, 769, 1018
ApeKI	GCWGC	3 cut(s)	5, 578, 1199
AspA2I	CCTAGG	1 cut(s)	1021
AspS9I	GGNCC	2 cut(s)	850, 898
AsuHPI	GGTGA	3 cut(s)	272, 896, 1235
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	2 cut(s)	850, 898
AvrII	CCTAGG	1 cut(s)	1021
BamHI	GGATCC	2 cut(s)	340, 1074
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	565, 1186
BccI	CCATC	5 cut(s)	304, 668, 728, 889, 1181
BciT130I	CCWGG	3 cut(s)	660, 689, 861
BcoDI	GTCTC	5 cut(s)	54, 164, 443, 638, 989
BfaI	CTAG	3 cut(s)	249, 780, 1022
BfmI	CTRYAG	1 cut(s)	552
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	913
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	4 cut(s)	6, 559, 579, 1200
BlnI	CCTAGG	1 cut(s)	1021
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	4 cut(s)	7, 560, 580, 1201
Bme1390I	CCNGG	3 cut(s)	660, 689, 861
Bme18I	GGWCC	2 cut(s)	850, 898
BmeT110I	CYCGRG	1 cut(s)	1002
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	850, 898
BmiI	GGNNCC	3 cut(s)	342, 900, 1076
BmrFI	CCNGG	3 cut(s)	660, 689, 861
BmsI	GCATC	4 cut(s)	274, 292, 645, 1090
BmtI	GCTAGC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpmI	CTGGAG	1 cut(s)	774
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	1163
BsaI	GGTCTC	2 cut(s)	164, 989
BsaJI	CCNNGG	2 cut(s)	688, 1021
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 137, 164, 167, 215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 782
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	457, 527
BseBI	CCWGG	3 cut(s)	660, 689, 861
BseDI	CCNNGG	2 cut(s)	688, 1021
BseGI	GGATG	3 cut(s)	289, 315, 1192
BseLI	CCNNNNNNNGG	2 cut(s)	350, 782
BseMII	CTCAG	1 cut(s)	1095
BseNI	ACTGG	2 cut(s)	457, 527
BseRI	GAGGAG	3 cut(s)	70, 73, 142
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	565, 1186
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	176, 558, 771, 1020
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	2 cut(s)	156, 177
BslFI	GGGAC	3 cut(s)	884, 1040, 1150
BslI	CCNNNNNNNGG	2 cut(s)	350, 782
BsmAI	GTCTC	5 cut(s)	54, 164, 443, 638, 989
BsmFI	GGGAC	3 cut(s)	884, 1040, 1150
BsnI	GGCC	4 cut(s)	176, 558, 771, 1020
Bso31I	GGTCTC	2 cut(s)	164, 989
BsoBI	CYCGRG	1 cut(s)	1002
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp143I	GATC	3 cut(s)	340, 722, 1074
Bsp1720I	GCTNAGC	1 cut(s)	522
BspACI	CCGC	4 cut(s)	24, 559, 639, 1236
BspANI	GGCC	4 cut(s)	176, 558, 771, 1020
BspCNI	CTCAG	1 cut(s)	1096
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	342, 900, 1076
BspMI	ACCTGC	1 cut(s)	913
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	5 cut(s)	335, 348, 730, 1069, 1082
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	164, 989
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	457, 527
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	688, 1021
BssMI	GATC	3 cut(s)	340, 722, 1074
BssNI	GRCGYC	1 cut(s)	1163
BssT1I	CCWWGG	1 cut(s)	1021
Bst2UI	CCWGG	3 cut(s)	660, 689, 861
Bst4CI	ACNGT	5 cut(s)	269, 410, 419, 777, 907
BstACI	GRCGYC	1 cut(s)	1163
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	250, 441, 1234
BstDEI	CTNAG	3 cut(s)	71, 522, 1104
BstF5I	GGATG	3 cut(s)	289, 315, 1192
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	343, 725, 1077
BstMAI	GTCTC	5 cut(s)	54, 164, 443, 638, 989
BstMBI	GATC	3 cut(s)	340, 722, 1074
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 32, 311, 1208
BstNI	CCWGG	3 cut(s)	660, 689, 861
BstSCI	CCNGG	3 cut(s)	658, 687, 859
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	565, 1186
BstX2I	RGATCY	3 cut(s)	340, 722, 1074
BstXI	CCANNNNNNTGG	2 cut(s)	860, 1085
BstYI	RGATCY	3 cut(s)	340, 722, 1074
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	176, 558, 771, 1020
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	289, 315, 1192
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	913
Cac8I	GCNNGC	3 cut(s)	250, 441, 1234
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	850, 898
CseI	GACGC	2 cut(s)	207, 1152
CsiI	ACCWGGT	1 cut(s)	859
Csp6I	GTAC	2 cut(s)	277, 411
CviAII	CATG	5 cut(s)	16, 461, 490, 1047, 1126
CviQI	GTAC	2 cut(s)	277, 411
DdeI	CTNAG	3 cut(s)	71, 522, 1104
DpnI	GATC	3 cut(s)	342, 724, 1076
DpnII	GATC	3 cut(s)	340, 722, 1074
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	654
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	1021
Eco147I	AGGCCT	1 cut(s)	1020
Eco31I	GGTCTC	2 cut(s)	164, 989
Eco32I	GATATC	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	850, 898
Eco52I	CGGCCG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	1002
EcoRII	CCWGG	3 cut(s)	658, 687, 859
EcoRV	GATATC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	1021
ErhI	CCWWGG	1 cut(s)	1021
FaeI	CATG	5 cut(s)	19, 464, 493, 1050, 1129
FaqI	GGGAC	3 cut(s)	884, 1040, 1150
FatI	CATG	5 cut(s)	15, 460, 489, 1046, 1125
Fnu4HI	GCNGC	4 cut(s)	6, 559, 579, 1200
FokI	GGATG	3 cut(s)	296, 322, 1199
Fsp4HI	GCNGC	4 cut(s)	6, 559, 579, 1200
FspBI	CTAG	3 cut(s)	249, 780, 1022
GluI	GCNGC	4 cut(s)	6, 559, 579, 1200
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	4 cut(s)	176, 558, 771, 1020
HapII	CCGG	2 cut(s)	156, 177
HgaI	GACGC	2 cut(s)	207, 1152
Hin1I	GRCGYC	1 cut(s)	1163
Hin1II	CATG	5 cut(s)	19, 464, 493, 1050, 1129
HindIII	AAGCTT	3 cut(s)	437, 888, 1209
HinfI	GANTC	4 cut(s)	227, 382, 1043, 1153
HpaII	CCGG	2 cut(s)	156, 177
HphI	GGTGA	3 cut(s)	272, 896, 1235
Hpy166II	GTNNAC	2 cut(s)	406, 629
Hpy188I	TCNGA	2 cut(s)	131, 168
Hpy188III	TCNNGA	6 cut(s)	344, 386, 461, 539, 1012, 1157
Hpy8I	GTNNAC	2 cut(s)	406, 629
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	4 cut(s)	37, 148, 810, 937
HpyCH4III	ACNGT	5 cut(s)	269, 410, 419, 777, 907
HpyCH4IV	ACGT	2 cut(s)	256, 275
HpyCH4V	TGCA	4 cut(s)	117, 443, 581, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 32, 311, 1208
HpyF3I	CTNAG	3 cut(s)	71, 522, 1104
HpySE526I	ACGT	2 cut(s)	256, 275
Hsp92I	GRCGYC	1 cut(s)	1163
Hsp92II	CATG	5 cut(s)	19, 464, 493, 1050, 1129
Kzo9I	GATC	3 cut(s)	340, 722, 1074
Lsp1109I	GCAGC	2 cut(s)	565, 1186
LweI	GCATC	4 cut(s)	274, 292, 645, 1090
MabI	ACCWGGT	1 cut(s)	859
MaeI	CTAG	3 cut(s)	249, 780, 1022
MaeII	ACGT	2 cut(s)	256, 275
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	342, 724, 1076
MboI	GATC	3 cut(s)	340, 722, 1074
MboII	GAAGA	2 cut(s)	57, 229
MflI	RGATCY	3 cut(s)	340, 722, 1074
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	2 cut(s)	327, 348
MluI	ACGCGT	1 cut(s)	199
MlyI	GAGTC	2 cut(s)	236, 1162
MmeI	TCCRAC	3 cut(s)	251, 403, 685
MseI	TTAA	7 cut(s)	60, 330, 435, 918, 935, 1095, 1122
MslI	CAYNNNNRTG	2 cut(s)	795, 1221
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	2 cut(s)	156, 177
MspR9I	CCNGG	3 cut(s)	660, 689, 861
MvaI	CCWGG	3 cut(s)	660, 689, 861
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	11, 32, 311, 1208
NdeII	GATC	3 cut(s)	340, 722, 1074
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	5 cut(s)	19, 464, 493, 1050, 1129
NlaIV	GGNNCC	3 cut(s)	342, 900, 1076
NmeAIII	GCCGAG	1 cut(s)	676
OliI	CACNNNNGTG	1 cut(s)	1221
PaeR7I	CTCGAG	1 cut(s)	1002
PagI	TCATGA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	1020
PfeI	GAWTC	2 cut(s)	382, 1043
PkrI	GCNGC	4 cut(s)	7, 560, 580, 1201
PleI	GAGTC	2 cut(s)	235, 1161
PpsI	GAGTC	2 cut(s)	235, 1161
PsiI	TTATAA	3 cut(s)	590, 669, 1038
Psp6I	CCWGG	3 cut(s)	658, 687, 859
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	658, 687, 859
PspN4I	GGNNCC	3 cut(s)	342, 900, 1076
PspPI	GGNCC	2 cut(s)	850, 898
PspXI	VCTCGAGB	1 cut(s)	1002
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PsuI	RGATCY	3 cut(s)	340, 722, 1074
RsaI	GTAC	2 cut(s)	278, 412
RsaNI	GTAC	2 cut(s)	277, 411
RseI	CAYNNNNRTG	2 cut(s)	795, 1221
SaqAI	TTAA	7 cut(s)	60, 330, 435, 918, 935, 1095, 1122
SatI	GCNGC	4 cut(s)	6, 559, 579, 1200
Sau3AI	GATC	3 cut(s)	340, 722, 1074
Sau96I	GGNCC	2 cut(s)	850, 898
SchI	GAGTC	2 cut(s)	236, 1162
ScrFI	CCNGG	3 cut(s)	660, 689, 861
SduI	GDGCHC	1 cut(s)	930
SexAI	ACCWGGT	1 cut(s)	859
SfaNI	GCATC	4 cut(s)	274, 292, 645, 1090
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	1002
SinI	GGWCC	2 cut(s)	850, 898
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	2 cut(s)	795, 1221
SmlI	CTYRAG	3 cut(s)	434, 845, 1002
SmoI	CTYRAG	3 cut(s)	434, 845, 1002
Sse9I	AATT	2 cut(s)	327, 348
SseBI	AGGCCT	1 cut(s)	1020
SsiI	CCGC	4 cut(s)	24, 559, 639, 1236
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	3 cut(s)	249, 780, 1022
StuI	AGGCCT	1 cut(s)	1020
StyD4I	CCNGG	3 cut(s)	658, 687, 859
StyI	CCWWGG	1 cut(s)	1021
TaaI	ACNGT	5 cut(s)	269, 410, 419, 777, 907
TaiI	ACGT	2 cut(s)	259, 278
TaqI	TCGA	4 cut(s)	215, 387, 930, 1003
TasI	AATT	2 cut(s)	327, 348
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	382, 1043
Tru1I	TTAA	7 cut(s)	60, 330, 435, 918, 935, 1095, 1122
Tru9I	TTAA	7 cut(s)	60, 330, 435, 918, 935, 1095, 1122
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	3 cut(s)	5, 578, 1199
TspDTI	ATGAA	6 cut(s)	117, 477, 506, 779, 1035, 1124
TspGWI	ACGGA	1 cut(s)	1105
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	850, 898
XcmI	CCANNNNNNNNNTGG	2 cut(s)	860, 1175
XhoI	CTCGAG	1 cut(s)	1002
XmaJI	CCTAGG	1 cut(s)	1021
XspI	CTAG	3 cut(s)	249, 780, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.