pycom08g16740

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
16801733 .. 16803994
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g16740.3

Sequence Viewer

Length: 1134 bp
ATGGGACTGGTGAGCGCTCCCTCCTCCACTCCCGCTCCCGCTCTAGCTCCAGCTCCCTCCGTCGCAGACAACCTTCGGCCTCCCTGTTGCAAATTTACAATGGCTGCCTACGGCATAATCACGGCCTTCCAAGCGTCTTGGCTAAGATCCTCTTACTCCGGAGCCCATCTATGCAGACTGCCGCCATCATCATCATCAGTTGGGTTTCTCTCTCTGTCTTCACCATCATCATCAGCTGGTAAAATTTCGCAGCGCCGGCGCGTGATGTCTTCGGAGCAGGAGGCCTCCGGAGGAGGAGGTCTGACGTACAAGGATGCTGGTGTTGATATAGATGCTGGAACGGCGCTTGTTGATAAAATTAAAGCCATGGCTCCTGAAATTGGATCCTTTGGGGGTATTGTCCATGACGAGATACTCGGCGATGACCTATGCCTTGTTCACGGGACGGATGGCGTTGGAACTAAACTTAAGCTTGCATTTGAGACTGGAATTCATGATACCATTGGTATTGATTTGACTGCAGAGATGCCGGGTTTTTACAAAGACGGCGAGTATGACCTGGGCGGCTCTGCTGTTGGAGCTGTGAAAAAGGAATCGATCATTGATGGAAAAAACATTGCTCCCGGAGATGTCATCATTGGCCTGCCGTCCAGCGGGGTTCATTCCAATGGTTTCTCTCTCGTGAGAAGGGTTCTTGCTGATACTGGGGTTTCTCTCAAGGACCAACTGCCTGGGGGAGAAGGTGTTACATTTGGCGAAGCTTTGATGGTCCCGACTGTGATATATGTTAATCAGGTCCTTGACTTAATAAGCAAGGGAGGTGTCAAAGGAGTAGCTCATATCACAGGGGGTGGTTTCACAGAAAATATACCCCGAGTGTTCCCGAAGGGCCTAGGAGCGGTCATTTATAAAGACTCATGGGAAGTCCCACCAGTTTTCAAATGGATCGAGAAGGCTGGAAGAGTAGAAGAGGCTGAGATGAGACGGACTTTTAACATGGGAATTGGAATGGTTCTTGTTGTGAGTCCGGAGGCATCCCACAGGATACTTGAAGAGGATGGGAATGGAGCTGCTTATAAATTATACCGCATCGGTGAGGTTGTAAGCAGTCATGAAGGAGTGATTTATGTATAG

Protein Analysis

378

Amino Acids

39.35

Weight (kDa)

5.55

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 909, 1077
AccBSI CCGCTC 3 cut(s) 35, 41, 899
AccII CGCG 1 cut(s) 261
AccIII TCCGGA 3 cut(s) 158, 287, 1027
AciI CCGC 7 cut(s) 33, 39, 182, 564, 654, 899, 1087
AclWI GGATC 4 cut(s) 141, 378, 391, 953
AcsI RAATTY 3 cut(s) 92, 243, 489
AfaI GTAC 1 cut(s) 308
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 3 cut(s) 380, 653, 898
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 940, 1052
AjnI CCWGG 2 cut(s) 558, 730
AluBI AGCT 8 cut(s) 47, 53, 236, 472, 581, 761, 836, 1070
AluI AGCT 8 cut(s) 47, 53, 236, 472, 581, 761, 836, 1070
Alw26I GTCTC 2 cut(s) 476, 976
AlwI GGATC 4 cut(s) 141, 378, 391, 953
Ama87I CYCGRG 1 cut(s) 873
Aor13HI TCCGGA 3 cut(s) 158, 287, 1027
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 5 cut(s) 77, 123, 282, 640, 889
ApeKI GCWGC 3 cut(s) 104, 250, 1070
ApoI RAATTY 3 cut(s) 92, 243, 489
AspA2I CCTAGG 1 cut(s) 892
AspLEI GCGC 4 cut(s) 17, 255, 261, 346
AspS9I GGNCC 4 cut(s) 721, 769, 796, 889
AsuC2I CCSGG 2 cut(s) 531, 624
AsuHPI GGTGA 3 cut(s) 22, 213, 1106
AvaI CYCGRG 1 cut(s) 873
AvaII GGWCC 3 cut(s) 721, 769, 796
AvrII CCTAGG 1 cut(s) 892
BaeI ACNNNNGTAYC 2 cut(s) 693, 726
BamHI GGATCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 166
BauI CACGAG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 210, 261
BbvI GCAGC 3 cut(s) 91, 262, 1057
BccI CCATC 7 cut(s) 174, 193, 232, 443, 599, 760, 1052
BceAI ACGGC 5 cut(s) 127, 138, 357, 562, 631
BciT130I CCWGG 2 cut(s) 560, 732
BciVI GTATCC 1 cut(s) 1038
BcnI CCSGG 2 cut(s) 531, 624
BcoDI GTCTC 2 cut(s) 476, 976
BfaI CTAG 2 cut(s) 44, 893
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 3 cut(s) 18, 256, 347
BfrI CTTAAG 1 cut(s) 467
BfuI GTATCC 1 cut(s) 1038
BisI GCNGC 5 cut(s) 105, 182, 251, 565, 1071
BlnI CCTAGG 1 cut(s) 892
BlsI GCNGC 5 cut(s) 106, 183, 252, 566, 1072
Bme1390I CCNGG 4 cut(s) 531, 560, 624, 732
Bme18I GGWCC 3 cut(s) 721, 769, 796
BmeT110I CYCGRG 1 cut(s) 873
BmgT120I GGNCC 4 cut(s) 721, 769, 796, 889
BmiI GGNNCC 4 cut(s) 163, 372, 385, 771
BmrFI CCNGG 4 cut(s) 531, 560, 624, 732
BmrI ACTGGG 1 cut(s) 714
BmsI GCATC 5 cut(s) 304, 322, 516, 1043, 1098
BmuI ACTGGG 1 cut(s) 714
BpiI GAAGAC 2 cut(s) 210, 261
BpmI CTGGAG 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 2 cut(s) 531, 624
Bsa29I ATCGAT 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 366, 559, 731, 892
BsaWI WCCGGW 3 cut(s) 158, 287, 1027
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 729, 759
Bsc4I CCNNNNNNNGG 3 cut(s) 380, 653, 898
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 4 cut(s) 12, 490, 709, 932
Bse3DI GCAATG 1 cut(s) 615
BseAI TCCGGA 3 cut(s) 158, 287, 1027
BseBI CCWGG 2 cut(s) 560, 732
BseCI ATCGAT 1 cut(s) 596
BseDI CCNNGG 4 cut(s) 366, 559, 731, 892
BseGI GGATG 4 cut(s) 319, 454, 1034, 1063
BseLI CCNNNNNNNGG 3 cut(s) 380, 653, 898
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 1 cut(s) 966
BseNI ACTGG 4 cut(s) 12, 490, 709, 932
BseRI GAGGAG 3 cut(s) 13, 306, 309
BseXI GCAGC 3 cut(s) 91, 262, 1057
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 5 cut(s) 79, 125, 284, 642, 891
BshVI ATCGAT 1 cut(s) 596
BsiHKCI CYCGRG 1 cut(s) 873
BsiSI CCGG 6 cut(s) 159, 256, 288, 530, 624, 1028
BslFI GGGAC 4 cut(s) 18, 457, 755, 911
BslI CCNNNNNNNGG 3 cut(s) 380, 653, 898
BsmAI GTCTC 2 cut(s) 476, 976
BsmBI CGTCTC 1 cut(s) 976
BsmFI GGGAC 4 cut(s) 18, 457, 755, 911
BsnI GGCC 5 cut(s) 79, 125, 284, 642, 891
BsoBI CYCGRG 1 cut(s) 873
Bsp1286I GDGCHC 1 cut(s) 166
Bsp13I TCCGGA 3 cut(s) 158, 287, 1027
Bsp143I GATC 4 cut(s) 146, 383, 597, 945
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 7 cut(s) 33, 39, 182, 564, 654, 899, 1087
BspANI GGCC 5 cut(s) 79, 125, 284, 642, 891
BspCNI CTCAG 1 cut(s) 967
BspDI ATCGAT 1 cut(s) 596
BspEI TCCGGA 3 cut(s) 158, 287, 1027
BspFNI CGCG 1 cut(s) 261
BspHI TCATGA 2 cut(s) 493, 1111
BspLI GGNNCC 4 cut(s) 163, 372, 385, 771
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 4 cut(s) 141, 378, 391, 953
BspTI CTTAAG 1 cut(s) 467
BsrBI CCGCTC 3 cut(s) 35, 41, 899
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 4 cut(s) 12, 490, 709, 932
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 4 cut(s) 366, 559, 731, 892
BssMI GATC 4 cut(s) 146, 383, 597, 945
BssSI CACGAG 1 cut(s) 680
BssT1I CCWWGG 2 cut(s) 366, 892
Bst2BI CACGAG 1 cut(s) 680
Bst2UI CCWGG 2 cut(s) 560, 732
Bst4CI ACNGT 1 cut(s) 778
Bst6I CTCTTC 3 cut(s) 955, 963, 1047
BstAFI CTTAAG 1 cut(s) 467
BstC8I GCNNGC 3 cut(s) 257, 474, 644
BstDEI CTNAG 2 cut(s) 143, 975
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 319, 454, 1034, 1063
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 3 cut(s) 18, 256, 347
BstHHI GCGC 4 cut(s) 17, 255, 261, 346
BstKTI GATC 4 cut(s) 149, 386, 600, 948
BstMAI GTCTC 2 cut(s) 476, 976
BstMBI GATC 4 cut(s) 146, 383, 597, 945
BstMWI GCNNNNNNNGC 4 cut(s) 131, 256, 341, 578
BstNI CCWGG 2 cut(s) 560, 732
BstSCI CCNGG 4 cut(s) 529, 558, 622, 730
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 3 cut(s) 91, 262, 1057
BstV2I GAAGAC 2 cut(s) 210, 261
BstX2I RGATCY 2 cut(s) 146, 383
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 2 cut(s) 146, 383
Bsu15I ATCGAT 1 cut(s) 596
BsuI GTATCC 1 cut(s) 1038
BsuRI GGCC 5 cut(s) 79, 125, 284, 642, 891
BsuTUI ATCGAT 1 cut(s) 596
BtgI CCRYGG 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 4 cut(s) 319, 454, 1034, 1063
Cac8I GCNNGC 3 cut(s) 257, 474, 644
CciI TCATGA 2 cut(s) 493, 1111
CfoI GCGC 4 cut(s) 17, 255, 261, 346
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 4 cut(s) 721, 769, 796, 889
ClaI ATCGAT 1 cut(s) 596
CseI GACGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 307
CviAII CATG 6 cut(s) 367, 404, 494, 918, 997, 1112
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 143, 975
DpnI GATC 4 cut(s) 148, 385, 599, 947
DpnII GATC 4 cut(s) 146, 383, 597, 945
Eam1104I CTCTTC 3 cut(s) 955, 963, 1047
EarI CTCTTC 3 cut(s) 955, 963, 1047
Eco130I CCWWGG 2 cut(s) 366, 892
Eco147I AGGCCT 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 3 cut(s) 721, 769, 796
Eco47III AGCGCT 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 873
EcoO109I RGGNCCY 2 cut(s) 796, 889
EcoRI GAATTC 1 cut(s) 489
EcoRII CCWGG 2 cut(s) 558, 730
EcoT14I CCWWGG 2 cut(s) 366, 892
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 366, 892
Esp3I CGTCTC 1 cut(s) 976
FaeI CATG 6 cut(s) 370, 407, 497, 921, 1000, 1115
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FaqI GGGAC 4 cut(s) 18, 457, 755, 911
FatI CATG 6 cut(s) 366, 403, 493, 917, 996, 1111
FauI CCCGC 3 cut(s) 40, 46, 647
Fnu4HI GCNGC 5 cut(s) 105, 182, 251, 565, 1071
FokI GGATG 4 cut(s) 326, 461, 1021, 1070
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 5 cut(s) 105, 182, 251, 565, 1071
FspBI CTAG 2 cut(s) 44, 893
GlaI GCGC 4 cut(s) 16, 254, 260, 345
GluI GCNGC 5 cut(s) 105, 182, 251, 565, 1071
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 3 cut(s) 18, 256, 347
HaeIII GGCC 5 cut(s) 79, 125, 284, 642, 891
HapII CCGG 6 cut(s) 159, 256, 288, 530, 624, 1028
HgaI GACGC 1 cut(s) 123
HhaI GCGC 4 cut(s) 17, 255, 261, 346
Hin1II CATG 6 cut(s) 370, 407, 497, 921, 1000, 1115
Hin6I GCGC 4 cut(s) 15, 253, 259, 344
HinP1I GCGC 4 cut(s) 15, 253, 259, 344
HindIII AAGCTT 2 cut(s) 470, 759
HinfI GANTC 3 cut(s) 593, 914, 1024
HpaII CCGG 6 cut(s) 159, 256, 288, 530, 624, 1028
HphI GGTGA 3 cut(s) 22, 213, 1106
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 2 cut(s) 274, 303
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 7 cut(s) 83, 136, 681, 734, 880, 946, 1109
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 4 cut(s) 90, 174, 476, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 256, 341, 578
HpyF3I CTNAG 2 cut(s) 143, 975
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 6 cut(s) 370, 407, 497, 921, 1000, 1115
HspAI GCGC 4 cut(s) 15, 253, 259, 344
Kpn2I TCCGGA 3 cut(s) 158, 287, 1027
KroI GCCGGC 1 cut(s) 255
KroNI GCCGGC 1 cut(s) 257
Kzo9I GATC 4 cut(s) 146, 383, 597, 945
Lsp1109I GCAGC 3 cut(s) 91, 262, 1057
LweI GCATC 5 cut(s) 304, 322, 516, 1043, 1098
MaeI CTAG 2 cut(s) 44, 893
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 745
MalI GATC 4 cut(s) 148, 385, 599, 947
MbiI CCGCTC 3 cut(s) 35, 41, 899
MboI GATC 4 cut(s) 146, 383, 597, 945
MboII GAAGA 5 cut(s) 210, 261, 972, 980, 1064
MflI RGATCY 2 cut(s) 146, 383
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 7 cut(s) 92, 243, 357, 378, 489, 1002, 1079
MlyI GAGTC 2 cut(s) 908, 1033
MmeI TCCRAC 2 cut(s) 436, 556
MreI CGCCGGCG 1 cut(s) 255
MroI TCCGGA 3 cut(s) 158, 287, 1027
MroNI GCCGGC 1 cut(s) 255
MseI TTAA 5 cut(s) 360, 468, 789, 806, 993
MslI CAYNNNNRTG 1 cut(s) 666
MspA1I CMGCKG 2 cut(s) 236, 654
MspCI CTTAAG 1 cut(s) 467
MspI CCGG 6 cut(s) 159, 256, 288, 530, 624, 1028
MspR9I CCNGG 4 cut(s) 531, 560, 624, 732
MvaI CCWGG 2 cut(s) 560, 732
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 4 cut(s) 131, 256, 341, 578
NaeI GCCGGC 1 cut(s) 257
NciI CCSGG 2 cut(s) 531, 624
NcoI CCATGG 1 cut(s) 366
NdeII GATC 4 cut(s) 146, 383, 597, 945
NgoMIV GCCGGC 1 cut(s) 255
NlaIII CATG 6 cut(s) 370, 407, 497, 921, 1000, 1115
NlaIV GGNNCC 4 cut(s) 163, 372, 385, 771
NmeAIII GCCGAG 1 cut(s) 396
PagI TCATGA 2 cut(s) 493, 1111
PceI AGGCCT 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 593
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 5 cut(s) 106, 183, 252, 566, 1072
PleI GAGTC 2 cut(s) 908, 1032
PpsI GAGTC 2 cut(s) 908, 1032
PpuMI RGGWCCY 1 cut(s) 796
PsiI TTATAA 2 cut(s) 909, 1077
Psp5II RGGWCCY 1 cut(s) 796
Psp6I CCWGG 2 cut(s) 558, 730
PspGI CCWGG 2 cut(s) 558, 730
PspN4I GGNNCC 4 cut(s) 163, 372, 385, 771
PspPI GGNCC 4 cut(s) 721, 769, 796, 889
PspPPI RGGWCCY 1 cut(s) 796
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 2 cut(s) 146, 383
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 5 cut(s) 360, 468, 789, 806, 993
SatI GCNGC 5 cut(s) 105, 182, 251, 565, 1071
Sau3AI GATC 4 cut(s) 146, 383, 597, 945
Sau96I GGNCC 4 cut(s) 721, 769, 796, 889
SchI GAGTC 2 cut(s) 908, 1033
ScrFI CCNGG 4 cut(s) 531, 560, 624, 732
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 5 cut(s) 304, 322, 516, 1043, 1098
SfcI CTRYAG 1 cut(s) 519
SgrAI CRCCGGYG 1 cut(s) 255
SinI GGWCC 3 cut(s) 721, 769, 796
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 467, 716
SmoI CTYRAG 2 cut(s) 467, 716
Sse9I AATT 7 cut(s) 92, 243, 357, 378, 489, 1002, 1079
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 7 cut(s) 33, 39, 182, 564, 654, 899, 1087
SspMI CTAG 2 cut(s) 44, 893
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 4 cut(s) 529, 558, 622, 730
StyI CCWWGG 2 cut(s) 366, 892
TaaI ACNGT 1 cut(s) 778
TaiI ACGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 596, 948
TasI AATT 7 cut(s) 92, 243, 357, 378, 489, 1002, 1079
TauI GCSGC 2 cut(s) 184, 567
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 5 cut(s) 360, 468, 789, 806, 993
Tru9I TTAA 5 cut(s) 360, 468, 789, 806, 993
TseI GCWGC 3 cut(s) 104, 250, 1070
TspDTI ATGAA 3 cut(s) 482, 650, 1128
TspGWI ACGGA 3 cut(s) 49, 461, 1000
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 3 cut(s) 721, 769, 796
XapI RAATTY 3 cut(s) 92, 243, 489
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XmaJI CCTAGG 1 cut(s) 892
XspI CTAG 2 cut(s) 44, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.