MD08G1195100.v1.1

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
25156563 .. 25159173
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1195100.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGGCTGCCTACGGCATGATCACCGCCTTCCAAGCGTCTTGGCTAAGATCCTCTTACTCCGGAGCCCATCTATGCAGACTGCCGCCATCATCATCATCATCATCAGTTGGGTTTCTCTCTCTGTCTTCACCAGCATCATCAGCTGGTAAAGTTTCGCAGAGCCGGCGCGTGTTGTCTTCGGAGCAGAAGGCCGCCGGAGTAGGAGGTCTGACGTACAAGGATGCTGGTGTAGATATAGATGCTGGAACGGCGCTTGTTGATAAAATTAAAGCCATGGCTCCTGAAATTGGATCCTTTGGGGGTATTGTCCATGATGAGATACTCCGCGAAAAAGACGTATGCCTTGTTCACGGGACGGATGGCGTTGGAACTAAACTTAAGCTTGCTTTTGAGACTGGAATTCATGACACCATTGGTATTGATTTGGTTGCCATGAATGTCAATGATATCGTTACTTGTGGGGCGAAGCCATTATCTTTCCAGGATTACTTTTCTACAAGCCGCCTTGATGTTGATATCGCTGTCAAGGTTATACAAGGTATTCGCGATGGTTGCCAACAATCTGGCTGCAGCTGTAAACTTTCAGGCGGAGAGACTGCAGAGATGCCGGATTTTTACAAAGACGGCGAGTATGACCTGGGCGGCTCTGCTGTTGGAGCTGTGAAAAAGGATTCGATCATTGATGGGAAAAACATTGCTCCCGGAGATGTCATCATTGGCCTGCCGTCCAGTGGGGTTCATTCCAATGGTTTTTCTCTTGTGAGAAGGGTTCTTGCTGATACTGGGGTTTCTCTCAAGGACCAACTGCCTGGTGGAGAAGGTGTTACATTTGGCGAAGCTTTGATGGTCCCGACTGTGATATATGTTAATCAGGTCCTTGACTTAATAAGCAAGGGAGGTGTCAACGGAGTAGCTCATATCACAGGGGGTGGTTTCACAGAAAATATACCCCGAGTGTTCCCGAAAGGCCTAGGAGCGGTCATTTATAAAGACTCATGGGAAGTCCCACCAGTTTTCAAATGGATCCAGAAGGCCGGAAGAGTAGAAGAGGCTGAGATGAGACGGACTTTTAACATGGGAATTGGCATGGTTCTTGTTGTGAGTCCGGAGGCATCCCACAGGATACTTGAAGAGGATGGGAATGGAGCTGCTTATAAAGTATACCGCATCGGTGAGGTTGTAAGCAGTCATGAAGGAGTGATTTATGTATAG

Protein Analysis

404

Amino Acids

42.35

Weight (kDa)

5.56

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIRS PF00586 111 - 221 1.9e-20 AIR synthase related protein, N-terminal domain
AIRS_C PF02769 234 - 402 1.4e-36 AIR synthase related protein, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 987, 1155
AccBSI CCGCTC 1 cut(s) 977
AccI GTMKAC 1 cut(s) 1161
AccII CGCG 3 cut(s) 168, 327, 546
AccIII TCCGGA 2 cut(s) 59, 1105
AciI CCGC 9 cut(s) 24, 83, 192, 325, 502, 588, 642, 977, 1165
AclWI GGATC 5 cut(s) 42, 285, 298, 1018, 1031
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 3 cut(s) 287, 731, 976
AflII CTTAAG 1 cut(s) 377
AgsI TTSAA 2 cut(s) 1018, 1130
AjnI CCWGG 3 cut(s) 480, 636, 808
AluBI AGCT 7 cut(s) 143, 382, 573, 659, 839, 914, 1148
AluI AGCT 7 cut(s) 143, 382, 573, 659, 839, 914, 1148
Alw26I GTCTC 3 cut(s) 386, 587, 1054
AlwI GGATC 5 cut(s) 42, 285, 298, 1018, 1031
Ama87I CYCGRG 1 cut(s) 951
Aor13HI TCCGGA 2 cut(s) 59, 1105
AoxI GGCC 4 cut(s) 189, 718, 967, 1032
ApeKI GCWGC 4 cut(s) 5, 567, 570, 1148
ApoI RAATTY 1 cut(s) 399
AspA2I CCTAGG 1 cut(s) 970
AspLEI GCGC 2 cut(s) 168, 253
AspS9I GGNCC 3 cut(s) 799, 847, 874
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 3 cut(s) 13, 120, 1184
AvaI CYCGRG 1 cut(s) 951
AvaII GGWCC 3 cut(s) 799, 847, 874
AvrII CCTAGG 1 cut(s) 970
BaeI ACNNNNGTAYC 2 cut(s) 771, 804
BamHI GGATCC 2 cut(s) 290, 1023
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 117, 168
BbvI GCAGC 3 cut(s) 554, 582, 1135
BccI CCATC 7 cut(s) 75, 94, 353, 542, 677, 838, 1130
BceAI ACGGC 4 cut(s) 28, 264, 640, 709
BciT130I CCWGG 3 cut(s) 482, 638, 810
BciVI GTATCC 1 cut(s) 1116
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 1 cut(s) 702
BcoDI GTCTC 3 cut(s) 386, 587, 1054
BfaI CTAG 1 cut(s) 971
BfmI CTRYAG 2 cut(s) 568, 597
BfoI RGCGCY 1 cut(s) 254
BfrI CTTAAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 1116
BisI GCNGC 8 cut(s) 6, 83, 192, 502, 568, 571, 643, 1149
BlnI CCTAGG 1 cut(s) 970
BlsI GCNGC 8 cut(s) 7, 84, 193, 503, 569, 572, 644, 1150
Bme1390I CCNGG 4 cut(s) 482, 638, 702, 810
Bme18I GGWCC 3 cut(s) 799, 847, 874
BmeT110I CYCGRG 1 cut(s) 951
BmgT120I GGNCC 3 cut(s) 799, 847, 874
BmiI GGNNCC 5 cut(s) 64, 279, 292, 849, 1025
BmrFI CCNGG 4 cut(s) 482, 638, 702, 810
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 6 cut(s) 143, 211, 229, 594, 1121, 1176
BmuI ACTGGG 1 cut(s) 792
BpiI GAAGAC 2 cut(s) 117, 168
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 1 cut(s) 702
BsaJI CCNNGG 3 cut(s) 273, 637, 970
BsaWI WCCGGW 2 cut(s) 59, 1105
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 731, 976
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 4 cut(s) 400, 729, 787, 1010
Bse3DI GCAATG 1 cut(s) 693
BseAI TCCGGA 2 cut(s) 59, 1105
BseBI CCWGG 3 cut(s) 482, 638, 810
BseDI CCNNGG 3 cut(s) 273, 637, 970
BseGI GGATG 4 cut(s) 226, 364, 1112, 1141
BseLI CCNNNNNNNGG 3 cut(s) 287, 731, 976
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 1 cut(s) 1044
BseNI ACTGG 4 cut(s) 400, 729, 787, 1010
BseXI GCAGC 3 cut(s) 554, 582, 1135
Bsh1236I CGCG 3 cut(s) 168, 327, 546
BshFI GGCC 4 cut(s) 191, 720, 969, 1034
BsiHKCI CYCGRG 1 cut(s) 951
BsiSI CCGG 7 cut(s) 60, 163, 195, 608, 702, 1035, 1106
BslFI GGGAC 3 cut(s) 367, 833, 989
BslI CCNNNNNNNGG 3 cut(s) 287, 731, 976
BsmAI GTCTC 3 cut(s) 386, 587, 1054
BsmBI CGTCTC 1 cut(s) 1054
BsmFI GGGAC 3 cut(s) 367, 833, 989
BsnI GGCC 4 cut(s) 191, 720, 969, 1034
BsoBI CYCGRG 1 cut(s) 951
Bsp1286I GDGCHC 1 cut(s) 67
Bsp13I TCCGGA 2 cut(s) 59, 1105
Bsp143I GATC 5 cut(s) 18, 47, 290, 675, 1023
Bsp19I CCATGG 1 cut(s) 273
Bsp68I TCGCGA 1 cut(s) 546
BspACI CCGC 9 cut(s) 24, 83, 192, 325, 502, 588, 642, 977, 1165
BspANI GGCC 4 cut(s) 191, 720, 969, 1034
BspCNI CTCAG 1 cut(s) 1045
BspEI TCCGGA 2 cut(s) 59, 1105
BspFNI CGCG 3 cut(s) 168, 327, 546
BspHI TCATGA 2 cut(s) 403, 1189
BspLI GGNNCC 5 cut(s) 64, 279, 292, 849, 1025
BspMAI CTGCAG 2 cut(s) 572, 601
BspPI GGATC 5 cut(s) 42, 285, 298, 1018, 1031
BspTI CTTAAG 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 977
BsrDI GCAATG 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 4 cut(s) 400, 729, 787, 1010
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 273, 637, 970
BssMI GATC 5 cut(s) 18, 47, 290, 675, 1023
BssNAI GTATAC 1 cut(s) 1162
BssT1I CCWWGG 2 cut(s) 273, 970
Bst1107I GTATAC 1 cut(s) 1162
Bst2UI CCWGG 3 cut(s) 482, 638, 810
Bst4CI ACNGT 1 cut(s) 856
Bst6I CTCTTC 3 cut(s) 1033, 1041, 1125
BstAFI CTTAAG 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 164, 384, 722
BstDEI CTNAG 2 cut(s) 44, 1053
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 4 cut(s) 226, 364, 1112, 1141
BstFNI CGCG 3 cut(s) 168, 327, 546
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 2 cut(s) 168, 253
BstKTI GATC 5 cut(s) 21, 50, 293, 678, 1026
BstMAI GTCTC 3 cut(s) 386, 587, 1054
BstMBI GATC 5 cut(s) 18, 47, 290, 675, 1023
BstMWI GCNNNNNNNGC 6 cut(s) 32, 140, 163, 248, 552, 656
BstNI CCWGG 3 cut(s) 482, 638, 810
BstSCI CCNGG 4 cut(s) 480, 636, 700, 808
BstSFI CTRYAG 2 cut(s) 568, 597
BstUI CGCG 3 cut(s) 168, 327, 546
BstV1I GCAGC 3 cut(s) 554, 582, 1135
BstV2I GAAGAC 2 cut(s) 117, 168
BstX2I RGATCY 3 cut(s) 47, 290, 1023
BstXI CCANNNNNNTGG 2 cut(s) 563, 809
BstYI RGATCY 3 cut(s) 47, 290, 1023
BstZ17I GTATAC 1 cut(s) 1162
BsuI GTATCC 1 cut(s) 1116
BsuRI GGCC 4 cut(s) 191, 720, 969, 1034
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 226, 364, 1112, 1141
BtsIMutI CAGTG 1 cut(s) 736
BtuMI TCGCGA 1 cut(s) 546
Cac8I GCNNGC 3 cut(s) 164, 384, 722
CciI TCATGA 2 cut(s) 403, 1189
CfoI GCGC 2 cut(s) 168, 253
Cfr10I RCCGGY 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 799, 847, 874
CseI GACGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 214
CviAII CATG 9 cut(s) 16, 274, 311, 404, 433, 996, 1075, 1087, 1190
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 44, 1053
DpnI GATC 5 cut(s) 20, 49, 292, 677, 1025
DpnII GATC 5 cut(s) 18, 47, 290, 675, 1023
Eam1104I CTCTTC 3 cut(s) 1033, 1041, 1125
EarI CTCTTC 3 cut(s) 1033, 1041, 1125
EciI GGCGGA 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 273, 970
Eco147I AGGCCT 1 cut(s) 969
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 2 cut(s) 448, 517
Eco47I GGWCC 3 cut(s) 799, 847, 874
Eco88I CYCGRG 1 cut(s) 951
EcoO109I RGGNCCY 1 cut(s) 874
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 3 cut(s) 480, 636, 808
EcoRV GATATC 2 cut(s) 448, 517
EcoT14I CCWWGG 2 cut(s) 273, 970
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 2 cut(s) 273, 970
Esp3I CGTCTC 1 cut(s) 1054
FaeI CATG 9 cut(s) 19, 277, 314, 407, 436, 999, 1078, 1090, 1193
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 3 cut(s) 367, 833, 989
FatI CATG 9 cut(s) 15, 273, 310, 403, 432, 995, 1074, 1086, 1189
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 1161
Fnu4HI GCNGC 8 cut(s) 6, 83, 192, 502, 568, 571, 643, 1149
FokI GGATG 4 cut(s) 233, 371, 1099, 1148
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 8 cut(s) 6, 83, 192, 502, 568, 571, 643, 1149
FspBI CTAG 1 cut(s) 971
GlaI GCGC 2 cut(s) 167, 252
GluI GCNGC 8 cut(s) 6, 83, 192, 502, 568, 571, 643, 1149
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 4 cut(s) 191, 720, 969, 1034
HapII CCGG 7 cut(s) 60, 163, 195, 608, 702, 1035, 1106
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 168, 253
Hin1II CATG 9 cut(s) 19, 277, 314, 407, 436, 999, 1078, 1090, 1193
Hin6I GCGC 2 cut(s) 166, 251
HinP1I GCGC 2 cut(s) 166, 251
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HindIII AAGCTT 2 cut(s) 380, 837
HinfI GANTC 3 cut(s) 671, 992, 1102
HpaII CCGG 7 cut(s) 60, 163, 195, 608, 702, 1035, 1106
HphI GGTGA 3 cut(s) 13, 120, 1184
Hpy166II GTNNAC 4 cut(s) 349, 578, 904, 1162
Hpy188I TCNGA 2 cut(s) 181, 210
Hpy188III TCNNGA 9 cut(s) 60, 281, 404, 545, 850, 961, 1027, 1106, 1190
Hpy8I GTNNAC 4 cut(s) 349, 578, 904, 1162
HpyAV CCTTC 6 cut(s) 37, 181, 759, 812, 1024, 1187
HpyCH4III ACNGT 1 cut(s) 856
HpyCH4IV ACGT 2 cut(s) 212, 336
HpyCH4V TGCA 3 cut(s) 75, 570, 599
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 140, 163, 248, 552, 656
HpyF3I CTNAG 2 cut(s) 44, 1053
HpySE526I ACGT 2 cut(s) 212, 336
Hsp92II CATG 9 cut(s) 19, 277, 314, 407, 436, 999, 1078, 1090, 1193
HspAI GCGC 2 cut(s) 166, 251
Kpn2I TCCGGA 2 cut(s) 59, 1105
KroI GCCGGC 1 cut(s) 162
KroNI GCCGGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 5 cut(s) 18, 47, 290, 675, 1023
LmnI GCTCC 7 cut(s) 62, 181, 283, 656, 703, 974, 1145
Lsp1109I GCAGC 3 cut(s) 554, 582, 1135
LweI GCATC 6 cut(s) 143, 211, 229, 594, 1121, 1176
MaeI CTAG 1 cut(s) 971
MaeII ACGT 2 cut(s) 212, 336
MaeIII GTNAC 2 cut(s) 451, 823
MalI GATC 5 cut(s) 20, 49, 292, 677, 1025
MbiI CCGCTC 1 cut(s) 977
MboI GATC 5 cut(s) 18, 47, 290, 675, 1023
MboII GAAGA 5 cut(s) 117, 168, 1050, 1058, 1142
MflI RGATCY 3 cut(s) 47, 290, 1023
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 4 cut(s) 264, 285, 399, 1080
MlyI GAGTC 2 cut(s) 986, 1111
MmeI TCCRAC 2 cut(s) 346, 634
MnlI CCTC 7 cut(s) 61, 197, 890, 1042, 1102, 1126, 1168
MroI TCCGGA 2 cut(s) 59, 1105
MroNI GCCGGC 1 cut(s) 162
MseI TTAA 5 cut(s) 267, 378, 867, 884, 1071
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 143, 573
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 7 cut(s) 60, 163, 195, 608, 702, 1035, 1106
MspR9I CCNGG 4 cut(s) 482, 638, 702, 810
MvaI CCWGG 3 cut(s) 482, 638, 810
MvnI CGCG 3 cut(s) 168, 327, 546
MwoI GCNNNNNNNGC 6 cut(s) 32, 140, 163, 248, 552, 656
NaeI GCCGGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 702
NcoI CCATGG 1 cut(s) 273
NdeII GATC 5 cut(s) 18, 47, 290, 675, 1023
NgoMIV GCCGGC 1 cut(s) 162
NlaIII CATG 9 cut(s) 19, 277, 314, 407, 436, 999, 1078, 1090, 1193
NlaIV GGNNCC 5 cut(s) 64, 279, 292, 849, 1025
NruI TCGCGA 1 cut(s) 546
PagI TCATGA 2 cut(s) 403, 1189
PceI AGGCCT 1 cut(s) 969
PdiI GCCGGC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 671
PfoI TCCNGGA 2 cut(s) 480, 700
PkrI GCNGC 8 cut(s) 7, 84, 193, 503, 569, 572, 644, 1150
PleI GAGTC 2 cut(s) 986, 1110
PpsI GAGTC 2 cut(s) 986, 1110
PpuMI RGGWCCY 1 cut(s) 874
PsiI TTATAA 2 cut(s) 987, 1155
Psp5II RGGWCCY 1 cut(s) 874
Psp6I CCWGG 3 cut(s) 480, 636, 808
PspGI CCWGG 3 cut(s) 480, 636, 808
PspN4I GGNNCC 5 cut(s) 64, 279, 292, 849, 1025
PspPI GGNCC 3 cut(s) 799, 847, 874
PspPPI RGGWCCY 1 cut(s) 874
PsrI GAACNNNNNNTAC 2 cut(s) 330, 362
PstI CTGCAG 2 cut(s) 572, 601
PsuI RGATCY 3 cut(s) 47, 290, 1023
PvuII CAGCTG 2 cut(s) 143, 573
RruI TCGCGA 1 cut(s) 546
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 5 cut(s) 267, 378, 867, 884, 1071
SatI GCNGC 8 cut(s) 6, 83, 192, 502, 568, 571, 643, 1149
Sau3AI GATC 5 cut(s) 18, 47, 290, 675, 1023
Sau96I GGNCC 3 cut(s) 799, 847, 874
SchI GAGTC 2 cut(s) 986, 1111
ScrFI CCNGG 4 cut(s) 482, 638, 702, 810
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 6 cut(s) 143, 211, 229, 594, 1121, 1176
SfcI CTRYAG 2 cut(s) 568, 597
SinI GGWCC 3 cut(s) 799, 847, 874
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 377, 794
SmoI CTYRAG 2 cut(s) 377, 794
Sse9I AATT 4 cut(s) 264, 285, 399, 1080
SseBI AGGCCT 1 cut(s) 969
SsiI CCGC 9 cut(s) 24, 83, 192, 325, 502, 588, 642, 977, 1165
SspMI CTAG 1 cut(s) 971
StuI AGGCCT 1 cut(s) 969
StyD4I CCNGG 4 cut(s) 480, 636, 700, 808
StyI CCWWGG 2 cut(s) 273, 970
TaaI ACNGT 1 cut(s) 856
TaiI ACGT 2 cut(s) 215, 339
TaqI TCGA 1 cut(s) 674
TasI AATT 4 cut(s) 264, 285, 399, 1080
TauI GCSGC 4 cut(s) 85, 194, 504, 645
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 5 cut(s) 267, 378, 867, 884, 1071
Tru9I TTAA 5 cut(s) 267, 378, 867, 884, 1071
TscAI CASTG 1 cut(s) 736
TseI GCWGC 4 cut(s) 5, 567, 570, 1148
TspDTI ATGAA 4 cut(s) 392, 449, 728, 1206
TspGWI ACGGA 3 cut(s) 371, 921, 1078
TspRI CASTG 1 cut(s) 736
Vha464I CTTAAG 1 cut(s) 377
VpaK11BI GGWCC 3 cut(s) 799, 847, 874
XapI RAATTY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 2 cut(s) 809, 1017
XmaJI CCTAGG 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 1161
XspI CTAG 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.