Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0019276

Physical Location & Seq

Genomic Coordinates Reverse (-)

25190283 .. 25192231

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTGCCAATGCCATGACCACCGCCTTCAAGGCAAACACAGAGTTGTCTCGTTGTGTTAAATCTTCGCTAAGACCCTCCTCCTCCAAAGCCAACCCTAATGAAGCCCAACTATGCAGACTGCCAATCGGACTTCCCTTCAACAACTTCTCCTCCGGTCTCTCTCTGACTTCGGCCGGTAATATTTCACAGAGCAGACGCGTAATGTCAGTGTCGAAGAACAACGAGTCCTCCAATGATTTTAGCGCTAGCCGACGTGGTGATGACAGTTGGACGTACAAGGATGCTGGTGTAGATATAGATGCTGGGATGGCACTTGTTGATATAATTAAACAGGAGGATCCTGAAATTGGGTCATTTGGGGGTATTGTCCAAGACGAGATTCTCGATGATGTATGCCTTGTTCATGGTACAGACGGTGTTGGAACGAAACTTAAGCTTGCATTTGAGACTGGAAATCATGAAACCATTGGTATTGATTTGGTTGCCATGAATGTCAATGATATTGTTACTCTTGGGGCCAAGCCAGTATCTTTTCAAGATTACTTTGCTACAGGCCGCCTTGATGTTGATATTGCTGCAAAGGTTATAAAAGGTATTCGTAATGGTTGCAAACAATCTGGCTGTAAACTTTCGGGCGGAGAGACTGCCGAGATGCCAGGTTTTTATAAGGATGGCGAGTATGACCTGGGTGGCTCTGCTGTTGGAGTTGTGAAAAAGGGATCTATCATTGATGGGAAAAACATTGTGGCTGGAGATGTTCTCATTGGCCTACCGTCTAGTGGGGTTCATTCTAATGGTTTCTCTCTTGTGAGAAGGGTTCTGGCTGATAGTGGGCTTTCTCTCAAGGACCAACTACCTGGTGGAGAAGCTATCACATTAGGTGAAGCTTTGATGGTCCCAACTGTGATATACGTTAATGCAGGTGCTCGACTTAATAAGGAAGGGAGGCGTCAAAGGAGTAGCTCATATCACAGGGGGTGGTCTCACAGAAAATATACCTCGAGTGTTCCCGAAAGGCCTAGGAGCTGTCATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008144 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

AIRS AIRS_C

Protein Analysis

347

Amino Acids

36.73

Weight (kDa)

7.61

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019276)

Species	Orthologous Gene IDs
malus_domestica	MD05G1254600.v1.1 MD08G1193800.v1.1 MD08G1194800.v1.1 MD08G1195000.v1.1 MD08G1195100.v1.1 MD15G1382500.v1.1
pyrus_communis	pycom05g23260 pycom08g16740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	590, 669, 1039
AarI	CACCTGC	1 cut(s)	914
Acc36I	ACCTGC	1 cut(s)	914
AccII	CGCG	1 cut(s)	201
AciI	CCGC	3 cut(s)	24, 559, 639
AclWI	GGATC	3 cut(s)	335, 348, 730
AcoI	YGGCCR	1 cut(s)	174
AcyI	GRCGYC	1 cut(s)	952
AfaI	GTAC	2 cut(s)	278, 412
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	350, 782
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	31, 142, 539
AjiI	CACGTC	1 cut(s)	257
AjnI	CCWGG	3 cut(s)	658, 687, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	5 cut(s)	439, 872, 890, 966, 1029
AluI	AGCT	5 cut(s)	439, 872, 890, 966, 1029
Alw21I	GWGCWC	1 cut(s)	931
Alw26I	GTCTC	5 cut(s)	54, 164, 443, 638, 990
AlwI	GGATC	3 cut(s)	335, 348, 730
Ama87I	CYCGRG	1 cut(s)	1003
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	5 cut(s)	174, 519, 556, 769, 1019
ApeKI	GCWGC	2 cut(s)	5, 578
AspA2I	CCTAGG	1 cut(s)	1022
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	519, 850, 898
AsuHPI	GGTGA	2 cut(s)	272, 896
AsuNHI	GCTAGC	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	1003
AvaII	GGWCC	2 cut(s)	850, 898
AvrII	CCTAGG	1 cut(s)	1022
BamHI	GGATCC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	931
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	4 cut(s)	304, 668, 728, 889
BciT130I	CCWGG	3 cut(s)	660, 689, 861
BcoDI	GTCTC	5 cut(s)	54, 164, 443, 638, 990
BfaI	CTAG	3 cut(s)	249, 780, 1023
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	249
BfrI	CTTAAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	914
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	6, 559, 579
BlnI	CCTAGG	1 cut(s)	1022
BlsI	GCNGC	3 cut(s)	7, 560, 580
Bme1390I	CCNGG	3 cut(s)	660, 689, 861
Bme18I	GGWCC	2 cut(s)	850, 898
BmeT110I	CYCGRG	1 cut(s)	1003
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	519, 850, 898
BmiI	GGNNCC	3 cut(s)	342, 520, 900
BmrFI	CCNGG	3 cut(s)	660, 689, 861
BmsI	GCATC	3 cut(s)	274, 292, 645
BmtI	GCTAGC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	747, 779
BpmI	CTGGAG	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	952
BsaI	GGTCTC	2 cut(s)	164, 990
BsaJI	CCNNGG	2 cut(s)	688, 1022
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 137, 164, 167, 215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 782
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	457, 527
BseBI	CCWGG	3 cut(s)	660, 689, 861
BseDI	CCNNGG	2 cut(s)	688, 1022
BseGI	GGATG	3 cut(s)	289, 315, 679
BseLI	CCNNNNNNNGG	2 cut(s)	350, 782
BseNI	ACTGG	2 cut(s)	457, 527
BseRI	GAGGAG	3 cut(s)	70, 73, 142
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	565
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	5 cut(s)	176, 521, 558, 771, 1021
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	931
BsiHKCI	CYCGRG	1 cut(s)	1003
BsiSI	CCGG	2 cut(s)	156, 177
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	350, 782
BsmAI	GTCTC	5 cut(s)	54, 164, 443, 638, 990
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	5 cut(s)	176, 521, 558, 771, 1021
Bso31I	GGTCTC	2 cut(s)	164, 990
BsoBI	CYCGRG	1 cut(s)	1003
Bsp1286I	GDGCHC	1 cut(s)	931
Bsp143I	GATC	2 cut(s)	340, 722
BspACI	CCGC	3 cut(s)	24, 559, 639
BspANI	GGCC	5 cut(s)	176, 521, 558, 771, 1021
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	342, 520, 900
BspMI	ACCTGC	1 cut(s)	914
BspOI	GCTAGC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	335, 348, 730
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	164, 990
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	457, 527
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	688, 1022
BssMI	GATC	2 cut(s)	340, 722
BssNI	GRCGYC	1 cut(s)	952
BssT1I	CCWWGG	1 cut(s)	1022
Bst2UI	CCWGG	3 cut(s)	660, 689, 861
Bst4CI	ACNGT	4 cut(s)	269, 419, 777, 907
BstACI	GRCGYC	1 cut(s)	952
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	250, 441
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	3 cut(s)	289, 315, 679
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	2 cut(s)	343, 725
BstMAI	GTCTC	5 cut(s)	54, 164, 443, 638, 990
BstMBI	GATC	2 cut(s)	340, 722
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 32, 311
BstNI	CCWGG	3 cut(s)	660, 689, 861
BstSCI	CCNGG	3 cut(s)	658, 687, 859
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	565
BstX2I	RGATCY	2 cut(s)	340, 722
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	2 cut(s)	340, 722
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	5 cut(s)	176, 521, 558, 771, 1021
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	289, 315, 679
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	914
Cac8I	GCNNGC	2 cut(s)	250, 441
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	1 cut(s)	248
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	519, 850, 898
CseI	GACGC	2 cut(s)	207, 941
CsiI	ACCWGGT	1 cut(s)	859
Csp6I	GTAC	2 cut(s)	277, 411
CviAII	CATG	4 cut(s)	16, 407, 461, 490
CviQI	GTAC	2 cut(s)	277, 411
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	342, 724
DpnII	GATC	2 cut(s)	340, 722
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	654
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	1022
Eco147I	AGGCCT	1 cut(s)	1021
Eco31I	GGTCTC	2 cut(s)	164, 990
Eco47I	GGWCC	2 cut(s)	850, 898
Eco47III	AGCGCT	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	1003
EcoRII	CCWGG	3 cut(s)	658, 687, 859
EcoT14I	CCWWGG	1 cut(s)	1022
ErhI	CCWWGG	1 cut(s)	1022
FaeI	CATG	4 cut(s)	19, 410, 464, 493
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	4 cut(s)	15, 406, 460, 489
Fnu4HI	GCNGC	3 cut(s)	6, 559, 579
FokI	GGATG	3 cut(s)	296, 322, 686
Fsp4HI	GCNGC	3 cut(s)	6, 559, 579
FspBI	CTAG	3 cut(s)	249, 780, 1023
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	6, 559, 579
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	249
HaeIII	GGCC	5 cut(s)	176, 521, 558, 771, 1021
HapII	CCGG	2 cut(s)	156, 177
HgaI	GACGC	2 cut(s)	207, 941
HhaI	GCGC	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	952
Hin1II	CATG	4 cut(s)	19, 410, 464, 493
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	2 cut(s)	437, 888
HinfI	GANTC	2 cut(s)	227, 382
HpaII	CCGG	2 cut(s)	156, 177
HphI	GGTGA	2 cut(s)	272, 896
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	2 cut(s)	131, 168
Hpy188III	TCNNGA	5 cut(s)	344, 386, 461, 539, 1013
Hpy8I	GTNNAC	1 cut(s)	629
Hpy99I	CGWCG	1 cut(s)	258
HpyAV	CCTTC	4 cut(s)	37, 148, 810, 938
HpyCH4III	ACNGT	4 cut(s)	269, 419, 777, 907
HpyCH4IV	ACGT	3 cut(s)	256, 275, 915
HpyCH4V	TGCA	5 cut(s)	117, 443, 581, 612, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 32, 311
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	3 cut(s)	256, 275, 915
Hsp92I	GRCGYC	1 cut(s)	952
Hsp92II	CATG	4 cut(s)	19, 410, 464, 493
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	340, 722
LmnI	GCTCC	1 cut(s)	1026
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	3 cut(s)	274, 292, 645
MabI	ACCWGGT	1 cut(s)	859
MaeI	CTAG	3 cut(s)	249, 780, 1023
MaeII	ACGT	3 cut(s)	256, 275, 915
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	2 cut(s)	342, 724
MboI	GATC	2 cut(s)	340, 722
MboII	GAAGA	2 cut(s)	57, 229
MflI	RGATCY	2 cut(s)	340, 722
MhlI	GDGCHC	1 cut(s)	931
MluCI	AATT	2 cut(s)	327, 348
MluI	ACGCGT	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	251, 403, 685
MnlI	CCTC	8 cut(s)	88, 91, 94, 163, 241, 331, 942, 1012
MseI	TTAA	5 cut(s)	60, 330, 435, 918, 936
MslI	CAYNNNNRTG	1 cut(s)	795
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	2 cut(s)	156, 177
MspR9I	CCNGG	3 cut(s)	660, 689, 861
MvaI	CCWGG	3 cut(s)	660, 689, 861
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	11, 32, 311
NdeII	GATC	2 cut(s)	340, 722
NheI	GCTAGC	1 cut(s)	248
NlaIII	CATG	4 cut(s)	19, 410, 464, 493
NlaIV	GGNNCC	3 cut(s)	342, 520, 900
NmeAIII	GCCGAG	1 cut(s)	676
PaeR7I	CTCGAG	1 cut(s)	1003
PagI	TCATGA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	914
PceI	AGGCCT	1 cut(s)	1021
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	7, 560, 580
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PsiI	TTATAA	3 cut(s)	590, 669, 1039
Psp6I	CCWGG	3 cut(s)	658, 687, 859
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	3 cut(s)	658, 687, 859
PspN4I	GGNNCC	3 cut(s)	342, 520, 900
PspPI	GGNCC	3 cut(s)	519, 850, 898
PspXI	VCTCGAGB	1 cut(s)	1003
PsrI	GAACNNNNNNTAC	2 cut(s)	387, 419
PsuI	RGATCY	2 cut(s)	340, 722
RsaI	GTAC	2 cut(s)	278, 412
RsaNI	GTAC	2 cut(s)	277, 411
RseI	CAYNNNNRTG	1 cut(s)	795
SaqAI	TTAA	5 cut(s)	60, 330, 435, 918, 936
SatI	GCNGC	3 cut(s)	6, 559, 579
Sau3AI	GATC	2 cut(s)	340, 722
Sau96I	GGNCC	3 cut(s)	519, 850, 898
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	660, 689, 861
SduI	GDGCHC	1 cut(s)	931
SexAI	ACCWGGT	1 cut(s)	859
SfaNI	GCATC	3 cut(s)	274, 292, 645
SfcI	CTRYAG	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	1003
SinI	GGWCC	2 cut(s)	850, 898
SlaI	CTCGAG	1 cut(s)	1003
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	3 cut(s)	434, 845, 1003
SmoI	CTYRAG	3 cut(s)	434, 845, 1003
Sse9I	AATT	2 cut(s)	327, 348
SseBI	AGGCCT	1 cut(s)	1021
SsiI	CCGC	3 cut(s)	24, 559, 639
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	3 cut(s)	249, 780, 1023
StuI	AGGCCT	1 cut(s)	1021
StyD4I	CCNGG	3 cut(s)	658, 687, 859
StyI	CCWWGG	1 cut(s)	1022
TaaI	ACNGT	4 cut(s)	269, 419, 777, 907
TaiI	ACGT	3 cut(s)	259, 278, 918
TaqI	TCGA	4 cut(s)	215, 387, 931, 1004
TasI	AATT	2 cut(s)	327, 348
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	5 cut(s)	60, 330, 435, 918, 936
Tru9I	TTAA	5 cut(s)	60, 330, 435, 918, 936
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	2 cut(s)	5, 578
TspDTI	ATGAA	5 cut(s)	117, 395, 477, 506, 779
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	850, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	860
XhoI	CTCGAG	1 cut(s)	1003
XmaJI	CCTAGG	1 cut(s)	1022
XspI	CTAG	3 cut(s)	249, 780, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.