MD15G1382500.v1.1

Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
47143816 .. 47145875
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1382500.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGGCTGCCAACGGCATGATCAGCGCCTCCCAAGCATCTTGGCTAAGATCCTCTTACTCCGGAGCCCATCTACGTAGACTGCCGCCATCGTCAGTTGGGTTTATCTCTCTGTCTTCACCATCATTCTCAGCTGGTAAAATTTCGCGGAGCAGGCGCGTATTGTCTCCGGAGCAGGAGGCCGCCGGAGGAGGAGGCCTGACGTACAAGGATGCTGGTGTAGATATAGATGCTGGAACGGCGCTTGTTGATAAAATTAAAGCCATGGCTCCTGAAATTGGATCCTTTGGAGGCATTGTCCACGATGAGATACTCGGCGATGATCTGTGCCTTGTTCACGGGACGGATGGCGTTGGAACTAAACTTAAGCTTGCATTTGAGACTGCAATTCACGATACCATTGGCATTGATTTGGTTGCCATGAACGTCAATGATATCGTTACTTGTGGGGCGAAGCCATTATCTTTCCAGGATTACTTTGCTACAGGCCGCCTTGATGTTGATATCGCTGTCAAGGTTATACAAGGTATTCGCGATGGTTGCCAACAATCCGGCTGCAGCTGTAAACTTTCAGGCGGAGAGAGATGCCGGGCTTTTACAAAGACGGGGGAGTATGACCTGGGCGGCTCTGCTGTTGGAGCTGTGAAAAAGGATTCGATCATTGATGGGAAAAACATTGTTCCCGGAGATGTCATCATTGGCCTGCCGTCTAGCGGGGTTCATTCCAATGGTTTCTCTCTTGTTAGAAGGGTTCTGGCTGATGCTGGGGTTTCTCTCAAGGACCAACTGCCTGGTGGAGAAGGTATTACATTTGGCGAAGCTTTGATGGTCCCGACTGTGATATATGTTAAGCAGGTCCTTGACCTAATAAGCAAGGGAGGTGTGAAAGGAGTAGCTCATATCACAGGGGGTGGTTTCACAGAAAATATACCTCGAGTGTTCCCGGAAGGCCTAGGAGCGGACATTTATAAAGACTCATGGGAAGTCCCATGTATTTTCAAATGGATCCAGAAGGCCGGAAGAGTAGAAGAGGCTGAGATGAGACGGACTTTTAACATGGGAATTGGAATGGTTCTTGTTGTGAGTCCGGAGGCATCACAGAGGATACTTGAGGAGGACAGGAATGTTTACCGCATTGGTGAGGTTGTAAGCAGTCATGAAGGAGTGGCTTATGTATGGTTGATTTTAAGAACCAGGATCCTCTCCCGAGCAATTCCCTAG

Protein Analysis

406

Amino Acids

42.85

Weight (kDa)

6.2

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIRS PF00586 105 - 214 9.4e-20 AIR synthase related protein, N-terminal domain
AIRS_C PF02769 227 - 389 4.8e-35 AIR synthase related protein, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
Acc36I ACCTGC 1 cut(s) 841
AccBSI CCGCTC 1 cut(s) 956
AccI GTMKAC 1 cut(s) 76
AccII CGCG 3 cut(s) 145, 156, 531
AccIII TCCGGA 3 cut(s) 59, 166, 1084
AciI CCGC 9 cut(s) 83, 145, 180, 487, 573, 621, 711, 956, 1129
AclWI GGATC 7 cut(s) 42, 273, 286, 997, 1010, 1189, 1202
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 3 cut(s) 275, 710, 955
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 997
AjnI CCWGG 4 cut(s) 465, 615, 787, 1190
AluBI AGCT 6 cut(s) 131, 367, 558, 638, 818, 893
AluI AGCT 6 cut(s) 131, 367, 558, 638, 818, 893
Alw26I GTCTC 3 cut(s) 168, 371, 1033
AlwI GGATC 7 cut(s) 42, 273, 286, 997, 1010, 1189, 1202
Ama87I CYCGRG 2 cut(s) 930, 1203
Aor13HI TCCGGA 3 cut(s) 59, 166, 1084
AoxI GGCC 6 cut(s) 177, 193, 484, 697, 946, 1011
ApeKI GCWGC 3 cut(s) 5, 552, 555
ApoI RAATTY 1 cut(s) 138
AspA2I CCTAGG 1 cut(s) 949
AspLEI GCGC 3 cut(s) 26, 156, 241
AspS9I GGNCC 3 cut(s) 778, 826, 853
AsuC2I CCSGG 3 cut(s) 587, 681, 941
AsuHPI GGTGA 2 cut(s) 108, 1148
AvaI CYCGRG 2 cut(s) 930, 1203
AvaII GGWCC 3 cut(s) 778, 826, 853
AvrII CCTAGG 1 cut(s) 949
BamHI GGATCC 3 cut(s) 278, 1002, 1194
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 539, 567
BccI CCATC 7 cut(s) 75, 94, 127, 338, 527, 656, 817
BceAI ACGGC 3 cut(s) 28, 252, 688
BciT130I CCWGG 4 cut(s) 467, 617, 789, 1192
BciVI GTATCC 1 cut(s) 1095
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 3 cut(s) 587, 681, 941
BcoDI GTCTC 3 cut(s) 168, 371, 1033
BfaI CTAG 3 cut(s) 708, 950, 1216
BfmI CTRYAG 2 cut(s) 480, 553
BfoI RGCGCY 2 cut(s) 27, 242
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 841
BfuI GTATCC 1 cut(s) 1095
BisI GCNGC 7 cut(s) 6, 83, 180, 487, 553, 556, 622
BlnI CCTAGG 1 cut(s) 949
BlsI GCNGC 7 cut(s) 7, 84, 181, 488, 554, 557, 623
Bme1390I CCNGG 7 cut(s) 467, 587, 617, 681, 789, 941, 1192
Bme18I GGWCC 3 cut(s) 778, 826, 853
BmeT110I CYCGRG 2 cut(s) 930, 1203
BmgT120I GGNCC 3 cut(s) 778, 826, 853
BmiI GGNNCC 6 cut(s) 64, 267, 280, 828, 1004, 1196
BmrFI CCNGG 7 cut(s) 467, 587, 617, 681, 789, 941, 1192
BmsI GCATC 6 cut(s) 44, 199, 217, 572, 748, 1100
BpiI GAAGAC 1 cut(s) 105
BpuEI CTTGAG 2 cut(s) 758, 1127
BpuMI CCSGG 3 cut(s) 587, 681, 941
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 261, 616, 949
BsaWI WCCGGW 3 cut(s) 59, 166, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 710, 955
BseAI TCCGGA 3 cut(s) 59, 166, 1084
BseBI CCWGG 4 cut(s) 467, 617, 789, 1192
BseDI CCNNGG 3 cut(s) 261, 616, 949
BseGI GGATG 2 cut(s) 214, 349
BseLI CCNNNNNNNGG 3 cut(s) 275, 710, 955
BseMII CTCAG 2 cut(s) 141, 1023
BseRI GAGGAG 3 cut(s) 201, 204, 1124
BseXI GCAGC 2 cut(s) 539, 567
BseYI CCCAGC 1 cut(s) 761
Bsh1236I CGCG 3 cut(s) 145, 156, 531
BshFI GGCC 6 cut(s) 179, 195, 486, 699, 948, 1013
BsiHKCI CYCGRG 2 cut(s) 930, 1203
BsiSI CCGG 9 cut(s) 60, 167, 183, 549, 586, 681, 941, 1014, 1085
BslFI GGGAC 3 cut(s) 352, 812, 968
BslI CCNNNNNNNGG 3 cut(s) 275, 710, 955
BsmAI GTCTC 3 cut(s) 168, 371, 1033
BsmBI CGTCTC 1 cut(s) 1033
BsmFI GGGAC 3 cut(s) 352, 812, 968
BsnI GGCC 6 cut(s) 179, 195, 486, 699, 948, 1013
BsoBI CYCGRG 2 cut(s) 930, 1203
Bsp1286I GDGCHC 1 cut(s) 67
Bsp13I TCCGGA 3 cut(s) 59, 166, 1084
Bsp143I GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
Bsp19I CCATGG 1 cut(s) 261
Bsp68I TCGCGA 1 cut(s) 531
BspACI CCGC 9 cut(s) 83, 145, 180, 487, 573, 621, 711, 956, 1129
BspANI GGCC 6 cut(s) 179, 195, 486, 699, 948, 1013
BspCNI CTCAG 2 cut(s) 140, 1024
BspEI TCCGGA 3 cut(s) 59, 166, 1084
BspFNI CGCG 3 cut(s) 145, 156, 531
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 6 cut(s) 64, 267, 280, 828, 1004, 1196
BspMAI CTGCAG 1 cut(s) 557
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 7 cut(s) 42, 273, 286, 997, 1010, 1189, 1202
BspTI CTTAAG 1 cut(s) 362
BsrBI CCGCTC 1 cut(s) 956
BssECI CCNNGG 3 cut(s) 261, 616, 949
BssMI GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
BssT1I CCWWGG 2 cut(s) 261, 949
Bst2UI CCWGG 4 cut(s) 467, 617, 789, 1192
Bst4CI ACNGT 1 cut(s) 835
Bst6I CTCTTC 2 cut(s) 1012, 1020
BstAFI CTTAAG 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 3 cut(s) 152, 369, 701
BstDEI CTNAG 3 cut(s) 44, 127, 1032
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 214, 349
BstFNI CGCG 3 cut(s) 145, 156, 531
BstH2I RGCGCY 2 cut(s) 27, 242
BstHHI GCGC 3 cut(s) 26, 156, 241
BstKTI GATC 7 cut(s) 21, 50, 281, 322, 657, 1005, 1197
BstMAI GTCTC 3 cut(s) 168, 371, 1033
BstMBI GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
BstMWI GCNNNNNNNGC 6 cut(s) 21, 32, 151, 236, 537, 635
BstNI CCWGG 4 cut(s) 467, 617, 789, 1192
BstSCI CCNGG 7 cut(s) 465, 585, 615, 679, 787, 939, 1190
BstSFI CTRYAG 2 cut(s) 480, 553
BstSNI TACGTA 1 cut(s) 74
BstUI CGCG 3 cut(s) 145, 156, 531
BstV1I GCAGC 2 cut(s) 539, 567
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 4 cut(s) 47, 278, 1002, 1194
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 4 cut(s) 47, 278, 1002, 1194
BsuI GTATCC 1 cut(s) 1095
BsuRI GGCC 6 cut(s) 179, 195, 486, 699, 948, 1013
BtgI CCRYGG 1 cut(s) 261
BtgZI GCGATG 2 cut(s) 330, 546
BtsCI GGATG 2 cut(s) 214, 349
BtuMI TCGCGA 1 cut(s) 531
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 3 cut(s) 152, 369, 701
CciI TCATGA 1 cut(s) 1153
CfoI GCGC 3 cut(s) 26, 156, 241
Cfr13I GGNCC 3 cut(s) 778, 826, 853
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 16, 262, 418, 975, 987, 1054, 1154
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 44, 127, 1032
DpnI GATC 7 cut(s) 20, 49, 280, 321, 656, 1004, 1196
DpnII GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
Eam1104I CTCTTC 2 cut(s) 1012, 1020
EarI CTCTTC 2 cut(s) 1012, 1020
EciI GGCGGA 1 cut(s) 588
Eco105I TACGTA 1 cut(s) 74
Eco130I CCWWGG 2 cut(s) 261, 949
Eco147I AGGCCT 2 cut(s) 195, 948
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 2 cut(s) 433, 502
Eco47I GGWCC 3 cut(s) 778, 826, 853
Eco88I CYCGRG 2 cut(s) 930, 1203
EcoO109I RGGNCCY 1 cut(s) 853
EcoRII CCWGG 4 cut(s) 465, 615, 787, 1190
EcoRV GATATC 2 cut(s) 433, 502
EcoT14I CCWWGG 2 cut(s) 261, 949
EcoT38I GRGCYC 1 cut(s) 67
ErhI CCWWGG 2 cut(s) 261, 949
Esp3I CGTCTC 1 cut(s) 1033
FaeI CATG 7 cut(s) 19, 265, 421, 978, 990, 1057, 1157
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 3 cut(s) 352, 812, 968
FatI CATG 7 cut(s) 15, 261, 417, 974, 986, 1053, 1153
FauI CCCGC 1 cut(s) 704
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 7 cut(s) 6, 83, 180, 487, 553, 556, 622
FokI GGATG 2 cut(s) 221, 356
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 7 cut(s) 6, 83, 180, 487, 553, 556, 622
FspBI CTAG 3 cut(s) 708, 950, 1216
GlaI GCGC 3 cut(s) 25, 155, 240
GluI GCNGC 7 cut(s) 6, 83, 180, 487, 553, 556, 622
GsaI CCCAGC 1 cut(s) 765
HaeII RGCGCY 2 cut(s) 27, 242
HaeIII GGCC 6 cut(s) 179, 195, 486, 699, 948, 1013
HapII CCGG 9 cut(s) 60, 167, 183, 549, 586, 681, 941, 1014, 1085
HhaI GCGC 3 cut(s) 26, 156, 241
Hin1II CATG 7 cut(s) 19, 265, 421, 978, 990, 1057, 1157
Hin6I GCGC 3 cut(s) 24, 154, 239
HinP1I GCGC 3 cut(s) 24, 154, 239
HindIII AAGCTT 2 cut(s) 365, 816
HinfI GANTC 3 cut(s) 650, 971, 1081
HpaII CCGG 9 cut(s) 60, 167, 183, 549, 586, 681, 941, 1014, 1085
HphI GGTGA 2 cut(s) 108, 1148
Hpy166II GTNNAC 5 cut(s) 77, 298, 334, 563, 1126
Hpy8I GTNNAC 5 cut(s) 77, 298, 334, 563, 1126
HpyAV CCTTC 5 cut(s) 738, 791, 938, 1003, 1151
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4IV ACGT 3 cut(s) 73, 200, 423
HpyCH4V TGCA 3 cut(s) 371, 383, 555
HpyF10VI GCNNNNNNNGC 6 cut(s) 21, 32, 151, 236, 537, 635
HpyF3I CTNAG 3 cut(s) 44, 127, 1032
HpySE526I ACGT 3 cut(s) 73, 200, 423
Hsp92II CATG 7 cut(s) 19, 265, 421, 978, 990, 1057, 1157
HspAI GCGC 3 cut(s) 24, 154, 239
Kpn2I TCCGGA 3 cut(s) 59, 166, 1084
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
LmnI GCTCC 6 cut(s) 62, 147, 169, 271, 635, 953
Lsp1109I GCAGC 2 cut(s) 539, 567
LweI GCATC 6 cut(s) 44, 199, 217, 572, 748, 1100
MaeI CTAG 3 cut(s) 708, 950, 1216
MaeII ACGT 3 cut(s) 73, 200, 423
MaeIII GTNAC 1 cut(s) 436
MalI GATC 7 cut(s) 20, 49, 280, 321, 656, 1004, 1196
MbiI CCGCTC 1 cut(s) 956
MboI GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
MboII GAAGA 3 cut(s) 105, 1029, 1037
MflI RGATCY 4 cut(s) 47, 278, 1002, 1194
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 6 cut(s) 138, 252, 273, 384, 1059, 1209
MlyI GAGTC 2 cut(s) 965, 1090
MmeI TCCRAC 2 cut(s) 331, 613
MroI TCCGGA 3 cut(s) 59, 166, 1084
MseI TTAA 5 cut(s) 255, 363, 846, 1050, 1184
MslI CAYNNNNRTG 1 cut(s) 723
MspA1I CMGCKG 2 cut(s) 131, 558
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 9 cut(s) 60, 167, 183, 549, 586, 681, 941, 1014, 1085
MspR9I CCNGG 7 cut(s) 467, 587, 617, 681, 789, 941, 1192
MvaI CCWGG 4 cut(s) 467, 617, 789, 1192
MvnI CGCG 3 cut(s) 145, 156, 531
MwoI GCNNNNNNNGC 6 cut(s) 21, 32, 151, 236, 537, 635
NciI CCSGG 3 cut(s) 587, 681, 941
NcoI CCATGG 1 cut(s) 261
NdeII GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
NlaIII CATG 7 cut(s) 19, 265, 421, 978, 990, 1057, 1157
NlaIV GGNNCC 6 cut(s) 64, 267, 280, 828, 1004, 1196
NmeAIII GCCGAG 1 cut(s) 291
NruI TCGCGA 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 930
PagI TCATGA 1 cut(s) 1153
PceI AGGCCT 2 cut(s) 195, 948
PfeI GAWTC 1 cut(s) 650
PfoI TCCNGGA 3 cut(s) 465, 679, 939
PkrI GCNGC 7 cut(s) 7, 84, 181, 488, 554, 557, 623
PleI GAGTC 2 cut(s) 965, 1089
PpsI GAGTC 2 cut(s) 965, 1089
Ppu21I YACGTR 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 853
PsiI TTATAA 1 cut(s) 966
Psp5II RGGWCCY 1 cut(s) 853
Psp6I CCWGG 4 cut(s) 465, 615, 787, 1190
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 4 cut(s) 465, 615, 787, 1190
PspN4I GGNNCC 6 cut(s) 64, 267, 280, 828, 1004, 1196
PspPI GGNCC 3 cut(s) 778, 826, 853
PspPPI RGGWCCY 1 cut(s) 853
PspXI VCTCGAGB 1 cut(s) 930
PstI CTGCAG 1 cut(s) 557
PsuI RGATCY 4 cut(s) 47, 278, 1002, 1194
PvuII CAGCTG 2 cut(s) 131, 558
RruI TCGCGA 1 cut(s) 531
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 723
SaqAI TTAA 5 cut(s) 255, 363, 846, 1050, 1184
SatI GCNGC 7 cut(s) 6, 83, 180, 487, 553, 556, 622
Sau3AI GATC 7 cut(s) 18, 47, 278, 319, 654, 1002, 1194
Sau96I GGNCC 3 cut(s) 778, 826, 853
SchI GAGTC 2 cut(s) 965, 1090
ScrFI CCNGG 7 cut(s) 467, 587, 617, 681, 789, 941, 1192
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 6 cut(s) 44, 199, 217, 572, 748, 1100
SfcI CTRYAG 2 cut(s) 480, 553
Sfr274I CTCGAG 1 cut(s) 930
SinI GGWCC 3 cut(s) 778, 826, 853
SlaI CTCGAG 1 cut(s) 930
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 4 cut(s) 362, 773, 930, 1106
SmoI CTYRAG 4 cut(s) 362, 773, 930, 1106
SnaBI TACGTA 1 cut(s) 74
Sse9I AATT 6 cut(s) 138, 252, 273, 384, 1059, 1209
SseBI AGGCCT 2 cut(s) 195, 948
SsiI CCGC 9 cut(s) 83, 145, 180, 487, 573, 621, 711, 956, 1129
SspMI CTAG 3 cut(s) 708, 950, 1216
StuI AGGCCT 2 cut(s) 195, 948
StyD4I CCNGG 7 cut(s) 465, 585, 615, 679, 787, 939, 1190
StyI CCWWGG 2 cut(s) 261, 949
TaaI ACNGT 1 cut(s) 835
TaiI ACGT 3 cut(s) 76, 203, 426
TaqI TCGA 2 cut(s) 653, 931
TasI AATT 6 cut(s) 138, 252, 273, 384, 1059, 1209
TauI GCSGC 4 cut(s) 85, 182, 489, 624
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 5 cut(s) 255, 363, 846, 1050, 1184
Tru9I TTAA 5 cut(s) 255, 363, 846, 1050, 1184
TseI GCWGC 3 cut(s) 5, 552, 555
TspDTI ATGAA 3 cut(s) 434, 707, 1170
TspGWI ACGGA 2 cut(s) 356, 1057
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 3 cut(s) 778, 826, 853
XapI RAATTY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 788
XhoI CTCGAG 1 cut(s) 930
XmaJI CCTAGG 1 cut(s) 949
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 3 cut(s) 708, 950, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.