MD05G1300500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
43360689 .. 43360910
222 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1300500.v1.1.491

Sequence Viewer

Length: 222 bp
ATGCGGTTCAGTCTAAACCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGATAGAGAGACAATGGCAAAGAGTTGGGACGATATAAAGTATGCGACTTCACAGGCGAGGCTTGATGAAGACGAAGTTGTGAGGACTACTGCGTACAAGCATGGAACTCCTCTTGAAGGAGGCAAGATTGCCGAGTCGGAGCCTGTTGATTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.71

Weight (kDa)

5.22

Isoelectric Point (pI)

18.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12960
malus_domestica MD05G1219200.v1.1 MD05G1300500.v1.1
prunus_persica Prupe.4G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0026701
rosa_laevigata RLG00000032948
rosa_multiflora Rmu_co8063442.1_g000001 Rmu_sc0002301.1_g000002
rosa_rugosa Rorug05G0094900
rosa_samantha Rh5BG184900 Rh5CG204700 Rh5DG187100
rosa_wichuraiana Rw5G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 179
BseRI GAGGAG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 104
BspACI CCGC 1 cut(s) 4
BspLI GGNNCC 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 157
CviAII CATG 1 cut(s) 164
CviJI RGCY 2 cut(s) 124, 205
CviKI_1 RGCY 2 cut(s) 124, 205
CviQI GTAC 1 cut(s) 157
EcoNI CCTNNNNNAGG 1 cut(s) 177
FaeI CATG 1 cut(s) 167
FaiI YATR 3 cut(s) 98, 105, 165
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 163
Hin1II CATG 1 cut(s) 167
HinfI GANTC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 167
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 32, 101
MboII GAAGA 2 cut(s) 143, 208
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 53, 114, 138, 176, 183
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 204
NmeAIII GCCGAG 1 cut(s) 220
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 204
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SchI GAGTC 1 cut(s) 206
SsiI CCGC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 144
XagI CCTNNNNNAGG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.