Rorug05G0094900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017183
Physical Location & Seq
Reverse (-)
8458509 .. 8459140
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0094900.1

Sequence Viewer

Length: 567 bp
ATGGCGGTGAAGCTAGGGTTCGACGAGGGAAATGAGATTTCCACCAAGAATTGTGCAGAAACAACTAGCCGCTCTTCTCCTGCGAACGGCGAGACCGCGGCAATGAAGGTTGACGAAGCCGAGGAGACGCCGACAGAAAGAAAATCCGAAACAAGTAGCCGCTCTTCTCCGGCGAACATCGACGGCAAGAAGGTTGACGAAGCCGAGGAGACGCTGACGGAAACCAAATCTGGTGCTGAAGTGAAGCTAGCCTTTGGTGACAATGGAAATGCGGTCACCACCAAGAATTGTACTGAAAGAAGTAGCGGCTCTTCTCCTCCAGCGGACATTGACAGCCAGAACGGATCAATTAAAGGTGACGAAGGCGATGAGACGCCAGTTGAAACCAAAATGGTGCATGGACAATTGCTTAAGGGTTCGAAGATGGAAGAGGTGGTTTTGGGAGACGATTTGGGCAAAGGCACAGAAGCTTGTGAGAAAAGCAAAACAGAGGGGGTAGAGGACATGATTTCTGGTAAAGATTACCGAAAATCTTTTCATCAAATTTGGTGTTATATGATTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.11

Weight (kDa)

4.64

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12960
malus_domestica MD05G1219200.v1.1 MD05G1300500.v1.1
prunus_persica Prupe.4G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0026701
rosa_laevigata RLG00000032948
rosa_multiflora Rmu_co8063442.1_g000001 Rmu_sc0002301.1_g000002
rosa_rugosa Rorug05G0094900
rosa_samantha Rh5BG184900 Rh5CG204700 Rh5DG187100
rosa_wichuraiana Rw5G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 72, 162
AccII CGCG 1 cut(s) 98
AciI CCGC 8 cut(s) 5, 70, 96, 98, 160, 272, 306, 323
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 1 cut(s) 258
AcyI GRCGYC 2 cut(s) 128, 374
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 1 cut(s) 86
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 1 cut(s) 383
AluBI AGCT 3 cut(s) 13, 247, 470
AluI AGCT 3 cut(s) 13, 247, 470
Alw26I GTCTC 5 cut(s) 86, 119, 203, 365, 438
AlwI GGATC 1 cut(s) 352
ApoI RAATTY 1 cut(s) 543
AsuHPI GGTGA 4 cut(s) 19, 268, 269, 368
AsuII TTCGAA 1 cut(s) 419
AsuNHI GCTAGC 1 cut(s) 247
BarI GAAGNNNNNNTAC 4 cut(s) 148, 180, 295, 327
BccI CCATC 1 cut(s) 418
BceAI ACGGC 2 cut(s) 103, 199
BcoDI GTCTC 5 cut(s) 86, 119, 203, 365, 438
BfaI CTAG 3 cut(s) 14, 66, 248
BfrI CTTAAG 1 cut(s) 410
BisI GCNGC 4 cut(s) 70, 99, 160, 307
BlsI GCNGC 4 cut(s) 71, 100, 161, 308
BmtI GCTAGC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 303
Bpu14I TTCGAA 1 cut(s) 419
BsaHI GRCGYC 2 cut(s) 128, 374
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 96, 120, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 96, 120, 204
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 3 cut(s) 137, 221, 306
BsgI GTGCAG 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 5 cut(s) 86, 119, 203, 365, 438
BsmBI CGTCTC 4 cut(s) 119, 203, 365, 438
Bso31I GGTCTC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 419
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 8 cut(s) 5, 70, 96, 98, 160, 272, 306, 323
BspFNI CGCG 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 251
BspPI GGATC 1 cut(s) 352
BspQI GCTCTTC 3 cut(s) 79, 169, 316
BspT104I TTCGAA 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 86
BsrBI CCGCTC 2 cut(s) 72, 162
BsrDI GCAATG 1 cut(s) 108
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 96, 120, 204
BssMI GATC 1 cut(s) 344
BssNI GRCGYC 2 cut(s) 128, 374
Bst6I CTCTTC 4 cut(s) 79, 169, 316, 423
BstACI GRCGYC 2 cut(s) 128, 374
BstAFI CTTAAG 1 cut(s) 410
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 274
BstFNI CGCG 1 cut(s) 98
BstKTI GATC 1 cut(s) 347
BstMAI GTCTC 5 cut(s) 86, 119, 203, 365, 438
BstMBI GATC 1 cut(s) 344
BstPI GGTNACC 1 cut(s) 274
BstUI CGCG 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 249
Cfr42I CCGCGG 1 cut(s) 99
CseI GACGC 3 cut(s) 136, 220, 382
Csp6I GTAC 1 cut(s) 291
CviAII CATG 2 cut(s) 398, 505
CviQI GTAC 1 cut(s) 291
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
Eam1104I CTCTTC 4 cut(s) 79, 169, 316, 423
EarI CTCTTC 4 cut(s) 79, 169, 316, 423
Eco31I GGTCTC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
Esp3I CGTCTC 4 cut(s) 119, 203, 365, 438
FaeI CATG 2 cut(s) 401, 508
FaiI YATR 6 cut(s) 399, 506, 555, 557, 563, 565
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 2 cut(s) 397, 504
Fnu4HI GCNGC 4 cut(s) 70, 99, 160, 307
Fsp4HI GCNGC 4 cut(s) 70, 99, 160, 307
FspBI CTAG 3 cut(s) 14, 66, 248
GluI GCNGC 4 cut(s) 70, 99, 160, 307
GsuI CTGGAG 1 cut(s) 303
HapII CCGG 1 cut(s) 170
HgaI GACGC 3 cut(s) 136, 220, 382
Hin1I GRCGYC 2 cut(s) 128, 374
Hin1II CATG 2 cut(s) 401, 508
HincII GTYRAC 2 cut(s) 112, 196
HindII GTYRAC 2 cut(s) 112, 196
HindIII AAGCTT 1 cut(s) 468
HpaII CCGG 1 cut(s) 170
HphI GGTGA 4 cut(s) 19, 268, 269, 368
Hpy166II GTNNAC 2 cut(s) 112, 196
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 2 cut(s) 112, 196
Hpy99I CGWCG 2 cut(s) 26, 185
HpyAV CCTTC 3 cut(s) 100, 184, 356
HpyCH4V TGCA 2 cut(s) 56, 397
Hsp92I GRCGYC 2 cut(s) 128, 374
Hsp92II CATG 2 cut(s) 401, 508
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 344
LguI GCTCTTC 3 cut(s) 79, 169, 316
LpnPI CCDG 7 cut(s) 93, 183, 216, 333, 350, 390, 498
MaeI CTAG 3 cut(s) 14, 66, 248
MaeIII GTNAC 3 cut(s) 257, 274, 356
MalI GATC 1 cut(s) 346
MbiI CCGCTC 2 cut(s) 72, 162
MboI GATC 1 cut(s) 344
MboII GAAGA 5 cut(s) 66, 156, 303, 433, 440
MfeI CAATTG 1 cut(s) 404
MluCI AATT 5 cut(s) 49, 286, 348, 404, 543
MnlI CCTC 7 cut(s) 19, 115, 199, 327, 424, 484, 493
MseI TTAA 2 cut(s) 351, 411
MspA1I CMGCKG 2 cut(s) 98, 323
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 170
MunI CAATTG 1 cut(s) 404
MvnI CGCG 1 cut(s) 98
NdeII GATC 1 cut(s) 344
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 2 cut(s) 401, 508
NmeAIII GCCGAG 2 cut(s) 145, 229
NmuCI GTSAC 3 cut(s) 257, 274, 356
NspV TTCGAA 1 cut(s) 419
PciSI GCTCTTC 3 cut(s) 79, 169, 316
PkrI GCNGC 4 cut(s) 71, 100, 161, 308
PspEI GGTNACC 1 cut(s) 274
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SacII CCGCGG 1 cut(s) 99
SapI GCTCTTC 3 cut(s) 79, 169, 316
SaqAI TTAA 2 cut(s) 351, 411
SatI GCNGC 4 cut(s) 70, 99, 160, 307
Sau3AI GATC 1 cut(s) 344
SetI ASST 7 cut(s) 15, 111, 195, 249, 358, 435, 472
Sfr303I CCGCGG 1 cut(s) 99
SfuI TTCGAA 1 cut(s) 419
SgrBI CCGCGG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 5 cut(s) 49, 286, 348, 404, 543
SsiI CCGC 8 cut(s) 5, 70, 96, 98, 160, 272, 306, 323
SspMI CTAG 3 cut(s) 14, 66, 248
TaqI TCGA 3 cut(s) 21, 180, 419
TasI AATT 5 cut(s) 49, 286, 348, 404, 543
TatI WGTACW 1 cut(s) 290
TauI GCSGC 4 cut(s) 72, 101, 162, 309
Tru1I TTAA 2 cut(s) 351, 411
Tru9I TTAA 2 cut(s) 351, 411
TseFI GTSAC 3 cut(s) 257, 274, 356
Tsp45I GTSAC 3 cut(s) 257, 274, 356
TspDTI ATGAA 2 cut(s) 119, 527
TspGWI ACGGA 2 cut(s) 233, 357
Vha464I CTTAAG 1 cut(s) 410
XapI RAATTY 1 cut(s) 543
XspI CTAG 3 cut(s) 14, 66, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.