Prupe.4G140900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
7935386 .. 7936046
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G140900.1

Sequence Viewer

Length: 291 bp
ATGGCAAAGAGCAAAGATGACATAAAGTATGGGACTTCACAAGCGAGGCTGAACGAGGATGAAGCTGTGAGGGTTGCATACAAGCATGGGACGCCTCTTGAAGGAGGCAAAATTGCTGATTCTGAGCCTGTGGATTTATTTTCCAGTGCTCATAATATTCCAAAGGCTCAAGCTCAGGCTCATCATCATCTTCATGATGAAGATTCTAATCACAACCAGTCCCAGATGAAACAAGATGAACTTACTAGAAGAGAAGGTGGTCGAGATTCCGCTGCAGACAGTACTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.61

Weight (kDa)

5.93

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12960
malus_domestica MD05G1219200.v1.1 MD05G1300500.v1.1
prunus_persica Prupe.4G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0026701
rosa_laevigata RLG00000032948
rosa_multiflora Rmu_co8063442.1_g000001 Rmu_sc0002301.1_g000002
rosa_rugosa Rorug05G0094900
rosa_samantha Rh5BG184900 Rh5CG204700 Rh5DG187100
rosa_wichuraiana Rw5G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 65, 173
AluI AGCT 2 cut(s) 65, 173
Alw21I GWGCWC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 259
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 283
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 2 cut(s) 144, 217
Bse8I GATNNNNATC 1 cut(s) 207
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 114, 188
BseNI ACTGG 2 cut(s) 144, 217
BseXI GCAGC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 151
BslFI GGGAC 3 cut(s) 46, 103, 205
BslI CCNNNNNNNGG 1 cut(s) 101
BsmFI GGGAC 3 cut(s) 46, 103, 205
Bsp1286I GDGCHC 1 cut(s) 151
BspACI CCGC 1 cut(s) 270
BspCNI CTCAG 2 cut(s) 115, 187
BspHI TCATGA 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 277
BsrI ACTGG 2 cut(s) 144, 217
BssNI GRCGYC 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 123, 174
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 151
CciI TCATGA 1 cut(s) 193
CseI GACGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 282
CviAII CATG 2 cut(s) 86, 194
CviJI RGCY 6 cut(s) 49, 65, 127, 167, 173, 179
CviKI_1 RGCY 6 cut(s) 49, 65, 127, 167, 173, 179
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 2 cut(s) 123, 174
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
EcoNI CCTNNNNNAGG 1 cut(s) 99
FaeI CATG 2 cut(s) 89, 197
FaiI YATR 6 cut(s) 23, 30, 79, 87, 153, 195
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 3 cut(s) 46, 103, 205
FatI CATG 2 cut(s) 85, 193
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 273
HgaI GACGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 2 cut(s) 89, 197
HinfI GANTC 3 cut(s) 119, 203, 266
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 98, 194, 263
HpyAV CCTTC 2 cut(s) 95, 248
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 77, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 91
HpyF3I CTNAG 2 cut(s) 123, 174
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 89, 197
LpnPI CCDG 5 cut(s) 141, 157, 161, 230, 236
Lsp1109I GCAGC 1 cut(s) 259
MaeI CTAG 1 cut(s) 246
MboII GAAGA 3 cut(s) 182, 212, 261
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 1 cut(s) 111
MnlI CCTC 5 cut(s) 39, 49, 63, 98, 105
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 91
NlaIII CATG 2 cut(s) 89, 197
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 3 cut(s) 119, 203, 266
PkrI GCNGC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 192
SatI GCNGC 1 cut(s) 273
ScaI AGTACT 1 cut(s) 283
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 67, 175, 259
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
Sse9I AATT 1 cut(s) 111
SsiI CCGC 1 cut(s) 270
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 3 cut(s) 119, 203, 266
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 5 cut(s) 75, 182, 213, 242, 252
TspRI CASTG 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 99
XspI CTAG 1 cut(s) 246
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.