Rh5DG187100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
20794076 .. 20794360
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG187100.1

Sequence Viewer

Length: 285 bp
ATGGCAAAGAGCAAGGATGACATAAAGTATGCGACTTCACAAGCGAGGCTCAGTGAAGATGAAGCAGTGAGAGTGGCTTACGAGCATGGAACACCTCTTGAAGGTGGAAAGATAGCCCAGTCTGAGCGTGTTGATCTATTTCCGGCTGCTCATAACATTTCCAAGAGCACCGAGTCTCATAGTCATGATGATCCAAATCGACAACCACAAGATTCTAGCAATCAGTCCCAGATGCGACGTGAGCCTGCTGATAATATACAAGTTGGTCATGAATCTAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.43

Weight (kDa)

5.42

Isoelectric Point (pI)

65.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12960
malus_domestica MD05G1219200.v1.1 MD05G1300500.v1.1
prunus_persica Prupe.4G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0026701
rosa_laevigata RLG00000032948
rosa_multiflora Rmu_co8063442.1_g000001 Rmu_sc0002301.1_g000002
rosa_rugosa Rorug05G0094900
rosa_samantha Rh5BG184900 Rh5CG204700 Rh5DG187100
rosa_wichuraiana Rw5G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 101
AjiI CACGTC 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 2 cut(s) 216, 283
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 239
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 195
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 2 cut(s) 64, 114
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 133, 190
BspCNI CTCAG 2 cut(s) 63, 115
BspHI TCATGA 2 cut(s) 184, 268
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 118
BssMI GATC 2 cut(s) 133, 190
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 50, 123
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 136, 193
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 2 cut(s) 133, 190
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 133
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 58, 72
Cac8I GCNNGC 1 cut(s) 246
CciI TCATGA 2 cut(s) 184, 268
CviAII CATG 3 cut(s) 86, 185, 269
CviJI RGCY 5 cut(s) 49, 77, 116, 146, 244
CviKI_1 RGCY 5 cut(s) 49, 77, 116, 146, 244
DdeI CTNAG 2 cut(s) 50, 123
DpnI GATC 2 cut(s) 135, 192
DpnII GATC 2 cut(s) 133, 190
EcoNI CCTNNNNNAGG 1 cut(s) 99
FaeI CATG 3 cut(s) 89, 188, 272
FaiI YATR 8 cut(s) 23, 30, 87, 153, 180, 186, 257, 270
FaqI GGGAC 1 cut(s) 211
FatI CATG 3 cut(s) 85, 184, 268
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 2 cut(s) 216, 283
GluI GCNGC 1 cut(s) 147
HapII CCGG 1 cut(s) 143
Hin1II CATG 3 cut(s) 89, 188, 272
HinfI GANTC 3 cut(s) 173, 212, 272
HpaII CCGG 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 98, 185, 269
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 2 cut(s) 50, 123
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 89, 188, 272
Kzo9I GATC 2 cut(s) 133, 190
LpnPI CCDG 4 cut(s) 131, 156, 242, 258
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 222
MaeI CTAG 2 cut(s) 216, 283
MaeII ACGT 1 cut(s) 238
MalI GATC 2 cut(s) 135, 192
MboI GATC 2 cut(s) 133, 190
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 182
MnlI CCTC 2 cut(s) 39, 105
MslI CAYNNNNRTG 1 cut(s) 183
MspI CCGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 2 cut(s) 133, 190
NlaIII CATG 3 cut(s) 89, 188, 272
PagI TCATGA 2 cut(s) 184, 268
PfeI GAWTC 2 cut(s) 212, 272
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 183
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 2 cut(s) 133, 190
SchI GAGTC 1 cut(s) 182
SduI GDGCHC 1 cut(s) 170
SetI ASST 4 cut(s) 97, 106, 241, 284
SfaNI GCATC 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 183
SspMI CTAG 2 cut(s) 216, 283
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 199
TfiI GAWTC 2 cut(s) 212, 272
TscAI CASTG 2 cut(s) 58, 72
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 75, 285
TspRI CASTG 2 cut(s) 58, 72
XagI CCTNNNNNAGG 1 cut(s) 99
XspI CTAG 2 cut(s) 216, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.