RLG00000032948

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
21262171 .. 21262500
330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032948

Sequence Viewer

Length: 330 bp
ATGGCAAAGAGCAAGGATGACATAAAGTATGCAACTTCACAAGCGAGGCTTGGTGAAGATGAAGCAGTGAGAGTTGCTTACGAGCATGGAACACCTCTTGAAGGTGGAAAGATAGCCGAGTCTGAGCGTGTTGATCTATTTCGCGCTGCTCATAACATTTCTAAGAGCACCGAGTCTGATAGTCATGATGTTCCAAATCGACAACCACAAGATTCTAGCAATCAGTCGCAGATGCGACGTGAGCCTGCTGATAATATACTAGTTGGTCATGAATCCAACACCACTAGTGCTAGGTTTCCCAAGAAGCCTGAACCTCTAAATACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.1

Weight (kDa)

6.07

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12960
malus_domestica MD05G1219200.v1.1 MD05G1300500.v1.1
prunus_persica Prupe.4G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0026701
rosa_laevigata RLG00000032948
rosa_multiflora Rmu_co8063442.1_g000001 Rmu_sc0002301.1_g000002
rosa_rugosa Rorug05G0094900
rosa_samantha Rh5BG184900 Rh5CG204700 Rh5DG187100
rosa_wichuraiana Rw5G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 101
AhlI ACTAGT 2 cut(s) 259, 284
AjiI CACGTC 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 133
BcuI ACTAGT 2 cut(s) 259, 284
BfaI CTAG 4 cut(s) 216, 260, 285, 291
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 239
BmsI GCATC 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 133
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 2 cut(s) 184, 268
BssMI GATC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 123, 162
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 146
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 133
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 246
CciI TCATGA 2 cut(s) 184, 268
CfoI GCGC 1 cut(s) 146
CviAII CATG 3 cut(s) 86, 185, 269
CviJI RGCY 4 cut(s) 49, 116, 244, 307
CviKI_1 RGCY 4 cut(s) 49, 116, 244, 307
DdeI CTNAG 2 cut(s) 123, 162
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 99
FaeI CATG 3 cut(s) 89, 188, 272
FaiI YATR 7 cut(s) 23, 30, 87, 153, 186, 257, 270
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 3 cut(s) 85, 184, 268
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 4 cut(s) 216, 260, 285, 291
GlaI GCGC 1 cut(s) 145
GluI GCNGC 1 cut(s) 147
HhaI GCGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 89, 188, 272
Hin6I GCGC 1 cut(s) 144
HinP1I GCGC 1 cut(s) 144
HinfI GANTC 4 cut(s) 119, 173, 212, 272
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 124, 178
Hpy188III TCNNGA 3 cut(s) 98, 185, 269
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 2 cut(s) 123, 162
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 3 cut(s) 89, 188, 272
HspAI GCGC 1 cut(s) 144
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 258, 321
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 222
MaeI CTAG 4 cut(s) 216, 260, 285, 291
MaeII ACGT 1 cut(s) 238
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 170
MlyI GAGTC 2 cut(s) 128, 182
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 39, 105, 324
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 1 cut(s) 133
NlaIII CATG 3 cut(s) 89, 188, 272
NmeAIII GCCGAG 1 cut(s) 142
PagI TCATGA 2 cut(s) 184, 268
PfeI GAWTC 2 cut(s) 212, 272
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 2 cut(s) 127, 181
PpsI GAGTC 2 cut(s) 127, 181
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 2 cut(s) 128, 182
SduI GDGCHC 1 cut(s) 170
SetI ASST 5 cut(s) 97, 106, 241, 296, 316
SfaNI GCATC 1 cut(s) 222
SpeI ACTAGT 2 cut(s) 259, 284
SspMI CTAG 4 cut(s) 216, 260, 285, 291
TaiI ACGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 199
TfiI GAWTC 2 cut(s) 212, 272
TscAI CASTG 1 cut(s) 72
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 75, 285
TspRI CASTG 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 99
XspI CTAG 4 cut(s) 216, 260, 285, 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.