Rw5G017070

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
21836707 .. 21837037
331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017070.1

Sequence Viewer

Length: 285 bp
ATGGCAAAGAGCAAGGATGACATGAAGTATGCGACTTCACAAGCGAGGCTTAGTGAAGATGAAGCAGTGAGAGTTGCTTACGAGCATGGAACACCTCTTGAAGGTGGAAAGATAGCCCACACCGAGTCTCATAGTCATGATGATCCAAATCGACAACCACAAGATTCTAGCAATCAGTCCCATATGCGACGTGAGCCTGCTGATAATATACAAGTCGGTCATGAATCTAACACCAATAGTGCTAGGTTTCCCAAGAAGACTGCACCTTCTCTAAATACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

6.58

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12960
malus_domestica MD05G1219200.v1.1 MD05G1300500.v1.1
prunus_persica Prupe.4G140900_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0026701
rosa_laevigata RLG00000032948
rosa_multiflora Rmu_co8063442.1_g000001 Rmu_sc0002301.1_g000002
rosa_rugosa Rorug05G0094900
rosa_samantha Rh5BG184900 Rh5CG204700 Rh5DG187100
rosa_wichuraiana Rw5G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 101
AjiI CACGTC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 168, 243
BmgBI CACGTC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse8I GATNNNNATC 1 cut(s) 147
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 142
BspHI TCATGA 2 cut(s) 136, 220
BspPI GGATC 1 cut(s) 137
BssMI GATC 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 263
BtrI CACGTC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 2 cut(s) 136, 220
CviAII CATG 4 cut(s) 22, 86, 137, 221
CviJI RGCY 3 cut(s) 49, 116, 196
CviKI_1 RGCY 3 cut(s) 49, 116, 196
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 99
FaeI CATG 4 cut(s) 25, 89, 140, 224
FaiI YATR 9 cut(s) 23, 30, 87, 132, 138, 183, 185, 209, 222
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 21, 85, 136, 220
FauNDI CATATG 1 cut(s) 183
FokI GGATG 1 cut(s) 29
FspBI CTAG 2 cut(s) 168, 243
Hin1II CATG 4 cut(s) 25, 89, 140, 224
HinfI GANTC 3 cut(s) 125, 164, 224
Hpy188III TCNNGA 3 cut(s) 98, 137, 221
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 95, 276
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 4 cut(s) 25, 89, 140, 224
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 1 cut(s) 210
MaeI CTAG 2 cut(s) 168, 243
MaeII ACGT 1 cut(s) 190
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 68, 268
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 2 cut(s) 39, 105
MslI CAYNNNNRTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeI CATATG 1 cut(s) 183
NdeII GATC 1 cut(s) 142
NlaIII CATG 4 cut(s) 25, 89, 140, 224
PagI TCATGA 2 cut(s) 136, 220
PfeI GAWTC 2 cut(s) 164, 224
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 135
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 134
SetI ASST 5 cut(s) 97, 106, 193, 248, 268
SmiMI CAYNNNNRTG 1 cut(s) 135
SspMI CTAG 2 cut(s) 168, 243
TaiI ACGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 151
TaqII GACCGA 1 cut(s) 206
TfiI GAWTC 2 cut(s) 164, 224
TscAI CASTG 1 cut(s) 72
TspDTI ATGAA 3 cut(s) 38, 75, 237
TspRI CASTG 1 cut(s) 72
XagI CCTNNNNNAGG 1 cut(s) 99
XspI CTAG 2 cut(s) 168, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.