MD05G1341200.v1.1

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014116
Physical Location & Seq
Forward (+)
46182960 .. 46183355
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1341200.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGATGTTAATTTTGAGCTCCGGAGAGGAAAATACTTCACCATTGAAGTTGGTTATTTTGACACCGTTCTCGAGATCAAAGAGAAGGTTCAGAAATACCAAGGGATTCCCATTTCCCACCAAACCCTAGTCTTTAACGGCCAAGTCCTCAACGATGAACGAGACGTTGCATACTGCGAGATCTACAACAATTCCAGCATCCAACTCCTGATCGCATCTGAATTTGATAAATCGATGAACAACAGTTGTAATAACAATGAGAAGGCCGCGGAGGACAAGCATAAGAAAATCCAGCTCAACGTGAAGACTCCCACGTCCAAAATCCATGTACCTATTGAAATGGACGTACACGACACAGTCTCAAAGTTGAAAGAGAAAATCCAAGCCATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

132

Amino Acids

15.12

Weight (kDa)

5.81

Isoelectric Point (pI)

23.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 8 - 71 2.6e-16 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05230 AT4G05240 AT4G05260
fragaria_vesca FvH4_2g19820 FvH4_3g02641
malus_domestica MD05G1341200.v1.1 MD05G1341300.v1.1 MD10G1314800.v1.1
prunus_persica Prupe.4G026000_v2.0.a1
pyrus_communis pycom10g26690
rosa_chinensis RchiOBHm_Chr5g0003951
rosa_multiflora Rmu_sc0000547.1_g000007
rosa_roxburghii Rroxscaffold_1G00072020
rosa_samantha Rh5BG035000 Rh5CG038600 Rh5DG034600
rosa_wichuraiana Rw5G003290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
AccII CGCG 1 cut(s) 269
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 2 cut(s) 267, 269
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 2 cut(s) 330, 348
AgsI TTSAA 3 cut(s) 47, 338, 370
AjiI CACGTC 1 cut(s) 315
AluBI AGCT 2 cut(s) 19, 295
AluI AGCT 2 cut(s) 19, 295
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 156, 364
Ama87I CYCGRG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 139, 264
ApoI RAATTY 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 71
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 156, 364
BfaI CTAG 1 cut(s) 128
BglII AGATCT 1 cut(s) 180
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 315
BmsI GCATC 2 cut(s) 207, 224
BpiI GAAGAC 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 100, 267
BsaWI WCCGGW 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 233
BseDI CCNNGG 2 cut(s) 100, 267
BseGI GGATG 2 cut(s) 10, 198
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 141, 266
BshVI ATCGAT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 156, 364
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 2 cut(s) 141, 266
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 21
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 75, 180, 210
BspACI CCGC 2 cut(s) 267, 269
BspANI GGCC 2 cut(s) 141, 266
BspDI ATCGAT 1 cut(s) 233
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 100, 267
BssMI GATC 3 cut(s) 75, 180, 210
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 67, 245, 358
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 10, 198
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 3 cut(s) 78, 183, 213
BstMAI GTCTC 2 cut(s) 156, 364
BstMBI GATC 3 cut(s) 75, 180, 210
BstUI CGCG 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
Bsu15I ATCGAT 1 cut(s) 233
BsuRI GGCC 2 cut(s) 141, 266
BsuTUI ATCGAT 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 267
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 10, 198
Cfr42I CCGCGG 1 cut(s) 270
ClaI ATCGAT 1 cut(s) 233
Csp6I GTAC 2 cut(s) 329, 347
CviAII CATG 1 cut(s) 326
CviJI RGCY 5 cut(s) 19, 141, 266, 295, 386
CviKI_1 RGCY 5 cut(s) 19, 141, 266, 295, 386
CviQI GTAC 2 cut(s) 329, 347
DpnI GATC 3 cut(s) 77, 182, 212
DpnII GATC 3 cut(s) 75, 180, 210
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 1 cut(s) 329
FaiI YATR 4 cut(s) 172, 282, 327, 389
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 17, 185
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 2 cut(s) 141, 266
HapII CCGG 1 cut(s) 22
Hin1II CATG 1 cut(s) 329
HinfI GANTC 2 cut(s) 106, 307
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 2 cut(s) 93, 220
Hpy188III TCNNGA 4 cut(s) 22, 71, 73, 208
Hpy8I GTNNAC 1 cut(s) 349
HpyAV CCTTC 2 cut(s) 79, 256
HpyCH4III ACNGT 3 cut(s) 67, 245, 358
HpyCH4IV ACGT 4 cut(s) 165, 300, 314, 345
HpyCH4V TGCA 1 cut(s) 170
HpySE526I ACGT 4 cut(s) 165, 300, 314, 345
Hsp92II CATG 1 cut(s) 329
Kpn2I TCCGGA 1 cut(s) 21
KspI CCGCGG 1 cut(s) 270
Kzo9I GATC 3 cut(s) 75, 180, 210
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 35, 208, 221, 305
LweI GCATC 2 cut(s) 207, 224
MaeI CTAG 1 cut(s) 128
MaeII ACGT 4 cut(s) 165, 300, 314, 345
MalI GATC 3 cut(s) 77, 182, 212
MboI GATC 3 cut(s) 75, 180, 210
MboII GAAGA 1 cut(s) 316
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 10, 190, 221
MlyI GAGTC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 3 cut(s) 20, 158, 265
MroI TCCGGA 1 cut(s) 21
MseI TTAA 2 cut(s) 9, 135
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 269
NdeII GATC 3 cut(s) 75, 180, 210
NlaIII CATG 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 71
PfeI GAWTC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 21
PsuI RGATCY 1 cut(s) 180
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 2 cut(s) 330, 348
RsaNI GTAC 2 cut(s) 329, 347
SacI GAGCTC 1 cut(s) 21
SacII CCGCGG 1 cut(s) 270
SaqAI TTAA 2 cut(s) 9, 135
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 75, 180, 210
SchI GAGTC 1 cut(s) 301
SduI GDGCHC 1 cut(s) 21
SetI ASST 8 cut(s) 21, 90, 168, 297, 303, 317, 334, 348
SfaNI GCATC 2 cut(s) 207, 224
Sfr274I CTCGAG 1 cut(s) 71
Sfr303I CCGCGG 1 cut(s) 270
SgrBI CCGCGG 1 cut(s) 270
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 3 cut(s) 10, 190, 221
SsiI CCGC 2 cut(s) 267, 269
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 1 cut(s) 21
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 3 cut(s) 67, 245, 358
TaiI ACGT 4 cut(s) 168, 303, 317, 348
TaqI TCGA 2 cut(s) 72, 233
TasI AATT 3 cut(s) 10, 190, 221
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 9, 135
Tru9I TTAA 2 cut(s) 9, 135
TspDTI ATGAA 2 cut(s) 171, 251
Tth111I GACNNNGTC 1 cut(s) 356
XapI RAATTY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 71
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.