Rmu_sc0000547.1_g000007

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000547.1
OG0014116
Physical Location & Seq
Reverse (-)
25695 .. 26510
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000547.1_g000007.1.cds

Sequence Viewer

Length: 816 bp
atggatgtcacatttgaaccccaaagaggaaggccatccttcaccattgaaattggttacttcgacactgtcctagagatcaaagaaaaggttcagaaataccaaggaatacccgtttcccagcaaaccctagtcttcaacggccaagtcctccacgacgaacgcgacgttgcctactgtgaaatcctcgaccaatccaagattcagctcattattaattccgaatccgataaacatgctaccaatgtcaagctggaagactcatccccgcccaagaagatccagctcaatgtgaagacccccacgtccaaaatgcatgtccccgtagaaatggacccaaatgacaccgtgaccaagttgagggagaagattcaaggcttggagccggttcctcttagccgtttggtgctgcattacaccggtaacgaactacacgatcatcgatctttgcgtgaatgtgagatttccgacaatgcagagatcgaggtgagcttgagaccgtctccaacagctgtttcagctggtggggcaatggcggtgtcccccgggtcaaaaaataagttgaagctgatggtgctgcccaaatgcgggactaaaaagcttccagtggaggttaacgcatcggataatgtaggggagctgagaaaggagttgcaaaagttacaccagaggctacattttcatctgcctcaagagagctacttcttcatctataagcagaatgtgatggacgatgacaagtcgtttaggtggcaccatgtttgccagggtgatactattgaaattttcaatgggagcgttaccggtggttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

271

Amino Acids

30.61

Weight (kDa)

6.27

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05230 AT4G05240 AT4G05260
fragaria_vesca FvH4_2g19820 FvH4_3g02641
malus_domestica MD05G1341200.v1.1 MD05G1341300.v1.1 MD10G1314800.v1.1
prunus_persica Prupe.4G026000_v2.0.a1
pyrus_communis pycom10g26690
rosa_chinensis RchiOBHm_Chr5g0003951
rosa_multiflora Rmu_sc0000547.1_g000007
rosa_roxburghii Rroxscaffold_1G00072020
rosa_samantha Rh5BG035000 Rh5CG038600 Rh5DG034600
rosa_wichuraiana Rw5G003290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 753
AccII CGCG 1 cut(s) 165
AciI CCGC 3 cut(s) 269, 536, 588
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 783
AfiI CCNNNNNNNGG 4 cut(s) 26, 360, 587, 588
AgeI ACCGGT 2 cut(s) 419, 803
AgsI TTSAA 7 cut(s) 17, 50, 139, 374, 565, 782, 790
AjiI CACGTC 1 cut(s) 306
AjnI CCWGG 1 cut(s) 765
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 499, 531
Alw26I GTCTC 2 cut(s) 490, 507
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 32, 142
ApeKI GCWGC 2 cut(s) 409, 577
ApoI RAATTY 1 cut(s) 783
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AseI ATTAAT 1 cut(s) 216
AsiGI ACCGGT 2 cut(s) 419, 803
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 546, 547
AsuHPI GGTGA 3 cut(s) 34, 499, 782
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 753
BbsI GAAGAC 3 cut(s) 127, 264, 302
BbvI GCAGC 2 cut(s) 396, 564
BccI CCATC 3 cut(s) 43, 565, 721
BceAI ACGGC 2 cut(s) 157, 384
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BciT130I CCWGG 1 cut(s) 767
BcnI CCSGG 2 cut(s) 546, 547
BcoDI GTCTC 2 cut(s) 490, 507
BfaI CTAG 3 cut(s) 74, 131, 814
BisI GCNGC 2 cut(s) 410, 578
BlsI GCNGC 2 cut(s) 411, 579
Bme1390I CCNGG 3 cut(s) 546, 547, 767
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 545
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 5 cut(s) 336, 384, 390, 755, 811
BmrFI CCNGG 3 cut(s) 546, 547, 767
BmsI GCATC 1 cut(s) 629
BpiI GAAGAC 3 cut(s) 127, 264, 302
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpuEI CTTGAG 2 cut(s) 514, 675
BpuMI CCSGG 2 cut(s) 546, 547
Bsa29I ATCGAT 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 4 cut(s) 103, 544, 545, 766
BsaWI WCCGGW 2 cut(s) 419, 803
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 360, 587, 588
Bse118I RCCGGY 3 cut(s) 385, 419, 803
Bse1I ACTGG 1 cut(s) 605
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 1 cut(s) 767
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 4 cut(s) 103, 544, 545, 766
BseGI GGATG 3 cut(s) 10, 35, 263
BseLI CCNNNNNNNGG 4 cut(s) 26, 360, 587, 588
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 1 cut(s) 605
BseXI GCAGC 2 cut(s) 396, 564
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 34, 144
BshNI GGYRCC 1 cut(s) 753
BshTI ACCGGT 2 cut(s) 419, 803
BshVI ATCGAT 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 4 cut(s) 386, 420, 546, 804
BslFI GGGAC 3 cut(s) 305, 526, 604
BslI CCNNNNNNNGG 4 cut(s) 26, 360, 587, 588
BsmAI GTCTC 2 cut(s) 490, 507
BsmBI CGTCTC 1 cut(s) 507
BsmFI GGGAC 3 cut(s) 305, 526, 604
BsnI GGCC 2 cut(s) 34, 144
Bso31I GGTCTC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 545
Bsp143I GATC 5 cut(s) 78, 279, 436, 443, 480
BspACI CCGC 3 cut(s) 269, 536, 588
BspANI GGCC 2 cut(s) 34, 144
BspCNI CTCAG 1 cut(s) 633
BspDI ATCGAT 1 cut(s) 442
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 336, 384, 390, 755, 811
BspPI GGATC 1 cut(s) 274
BspT107I GGYRCC 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 3 cut(s) 385, 419, 803
BsrI ACTGG 1 cut(s) 605
BssAI RCCGGY 3 cut(s) 385, 419, 803
BssECI CCNNGG 4 cut(s) 103, 544, 545, 766
BssMI GATC 5 cut(s) 78, 279, 436, 443, 480
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 4 cut(s) 70, 179, 349, 501
BstDEI CTNAG 2 cut(s) 395, 641
BstF5I GGATG 3 cut(s) 10, 35, 263
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 5 cut(s) 81, 282, 439, 446, 483
BstMAI GTCTC 2 cut(s) 490, 507
BstMBI GATC 5 cut(s) 78, 279, 436, 443, 480
BstMWI GCNNNNNNNGC 3 cut(s) 518, 527, 574
BstNI CCWGG 1 cut(s) 767
BstNSI RCATGY 2 cut(s) 239, 320
BstSCI CCNGG 3 cut(s) 544, 545, 765
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 396, 564
BstV2I GAAGAC 3 cut(s) 127, 264, 302
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 442
BsuRI GGCC 2 cut(s) 34, 144
BsuTUI ATCGAT 1 cut(s) 442
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 3 cut(s) 10, 35, 263
BtsIMutI CAGTG 2 cut(s) 66, 612
Cfr10I RCCGGY 3 cut(s) 385, 419, 803
Cfr13I GGNCC 1 cut(s) 334
Cfr9I CCCGGG 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 442
CspAI ACCGGT 2 cut(s) 419, 803
CviAII CATG 3 cut(s) 236, 317, 758
DdeI CTNAG 2 cut(s) 395, 641
DpnI GATC 5 cut(s) 80, 281, 438, 445, 482
DpnII GATC 5 cut(s) 78, 279, 436, 443, 480
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 545
EcoRII CCWGG 1 cut(s) 765
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 3 cut(s) 239, 320, 761
FaiI YATR 4 cut(s) 237, 318, 714, 759
FaqI GGGAC 3 cut(s) 305, 526, 604
FatI CATG 3 cut(s) 235, 316, 757
FauI CCCGC 2 cut(s) 276, 581
Fnu4HI GCNGC 2 cut(s) 410, 578
FokI GGATG 3 cut(s) 17, 22, 250
Fsp4HI GCNGC 2 cut(s) 410, 578
FspBI CTAG 3 cut(s) 74, 131, 814
GluI GCNGC 2 cut(s) 410, 578
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 2 cut(s) 34, 144
HapII CCGG 4 cut(s) 386, 420, 546, 804
Hin1II CATG 3 cut(s) 239, 320, 761
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 202, 224, 260, 370
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 4 cut(s) 386, 420, 546, 804
HphI GGTGA 3 cut(s) 34, 499, 782
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 5 cut(s) 96, 223, 229, 469, 625
Hpy188III TCNNGA 1 cut(s) 692
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 2 cut(s) 161, 170
HpyAV CCTTC 2 cut(s) 24, 49
HpyCH4III ACNGT 4 cut(s) 70, 179, 349, 501
HpyCH4IV ACGT 2 cut(s) 168, 305
HpyCH4V TGCA 4 cut(s) 316, 412, 476, 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 518, 527, 574
HpyF3I CTNAG 2 cut(s) 395, 641
HpySE526I ACGT 2 cut(s) 168, 305
Hsp92II CATG 3 cut(s) 239, 320, 761
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 5 cut(s) 78, 279, 436, 443, 480
LmnI GCTCC 3 cut(s) 382, 637, 795
Lsp1109I GCAGC 2 cut(s) 396, 564
LweI GCATC 1 cut(s) 629
MaeI CTAG 3 cut(s) 74, 131, 814
MaeII ACGT 2 cut(s) 168, 305
MaeIII GTNAC 6 cut(s) 7, 56, 349, 422, 660, 799
MalI GATC 5 cut(s) 80, 281, 438, 445, 482
MboI GATC 5 cut(s) 78, 279, 436, 443, 480
MboII GAAGA 6 cut(s) 127, 269, 289, 307, 379, 697
MflI RGATCY 1 cut(s) 279
MluCI AATT 3 cut(s) 51, 217, 783
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 492, 530
MnlI CCTC 9 cut(s) 20, 161, 197, 354, 402, 478, 604, 663, 699
Mph1103I ATGCAT 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 216, 615
MspA1I CMGCKG 2 cut(s) 512, 521
MspI CCGG 4 cut(s) 386, 420, 546, 804
MspR9I CCNGG 3 cut(s) 546, 547, 767
MvaI CCWGG 1 cut(s) 767
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 3 cut(s) 518, 527, 574
NciI CCSGG 2 cut(s) 546, 547
NdeII GATC 5 cut(s) 78, 279, 436, 443, 480
NlaIII CATG 3 cut(s) 239, 320, 761
NlaIV GGNNCC 5 cut(s) 336, 384, 390, 755, 811
NmuCI GTSAC 2 cut(s) 7, 349
NsiI ATGCAT 1 cut(s) 318
NspI RCATGY 2 cut(s) 239, 320
PcsI WCGNNNNNNNCGW 4 cut(s) 162, 165, 432, 448
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 3 cut(s) 202, 224, 370
PflFI GACNNNGTC 1 cut(s) 68
PinAI ACCGGT 2 cut(s) 419, 803
PkrI GCNGC 2 cut(s) 411, 579
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 5 cut(s) 336, 384, 390, 755, 811
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 512, 521
SaqAI TTAA 2 cut(s) 216, 615
SatI GCNGC 2 cut(s) 410, 578
Sau3AI GATC 5 cut(s) 78, 279, 436, 443, 480
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 3 cut(s) 546, 547, 767
SfaNI GCATC 1 cut(s) 629
SinI GGWCC 1 cut(s) 334
SmaI CCCGGG 1 cut(s) 547
SmlI CTYRAG 2 cut(s) 493, 690
SmoI CTYRAG 2 cut(s) 493, 690
Sse9I AATT 3 cut(s) 51, 217, 783
SsiI CCGC 3 cut(s) 269, 536, 588
SspMI CTAG 3 cut(s) 74, 131, 814
StyD4I CCNGG 3 cut(s) 544, 545, 765
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 4 cut(s) 70, 179, 349, 501
TaiI ACGT 2 cut(s) 171, 308
TaqI TCGA 4 cut(s) 63, 189, 442, 483
TasI AATT 3 cut(s) 51, 217, 783
TfiI GAWTC 3 cut(s) 202, 224, 370
Tru1I TTAA 2 cut(s) 216, 615
Tru9I TTAA 2 cut(s) 216, 615
TscAI CASTG 2 cut(s) 73, 612
TseFI GTSAC 2 cut(s) 7, 349
TseI GCWGC 2 cut(s) 409, 577
Tsp45I GTSAC 2 cut(s) 7, 349
TspDTI ATGAA 2 cut(s) 671, 697
TspMI CCCGGG 1 cut(s) 545
TspRI CASTG 2 cut(s) 73, 612
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 783
XceI RCATGY 2 cut(s) 239, 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 3 cut(s) 74, 131, 814
Zsp2I ATGCAT 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.