Rroxscaffold_1G00072020

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014116
Physical Location & Seq
Forward (+)
93212083 .. 93214059
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072020.1

Sequence Viewer

Length: 822 bp
ATGGATGTCACATTTGAACCCCAAAGAGGAAGGCCATCCTTCACCATTGAAATTGGTTACTTCGACACTGTCCTAGAGATCAAAGAAAAGGTTCAGAAATACCAAGGAATACCCGTTTCCCAGCAAACCCTAGTCTTCAACGGCCAAGTCCTCCACGACGAACGCGACGTTGCCTACTGTGAAATCCTCGACCAATCCAAGATTCAGCTCATTATTAATTCCGAATCCGATAAACATGCTACCAATGTCAAGCTGGAAAACTCATCCCCGCCCAAGAAGATCCAGCTCAATGTGAAGACCCCCACGTCCAAAGTGCATGTCCCCATAGAAATGGACCCAAATGACACCGTGACCAAGTTGAGGGAGAAGATTCAAGGCTTGGAGCCGGTTCCCCTTAGCCGTTTGGTGCTGCATTACACCGGTAACGAACTACACGATCATCGATCTTTGCGTGAATGTGAGATTTCCGACAATGCAGAGATCGAGGTGAGCTTGAGACCGTCCCCAACAGCTGTTTCAGCTGGTGGGGCAATGGCAGTGTCCCCCGGGTCAAAAAATAAGTTGAAGCTGATGGTGTTGCCCAAATGCGGGACTAAAAAGATTCCAGTGGAGGTTAACGCATCGGATAATGTAGGGGAGCTGAGAAAGGAGTTGCAAAAGTTACACCAGAGGCTACATTTTCATCTGCCTCAAGAGAGCTACTTCTTCATCTATAAGCAGAATGTGATGGACGATGACAAGTCGTTTAGGCTGCTAGCAACGACCATTGAACGGTGGCACAATCCATATTGCTCGTGGGATGTACCTCTTACTGGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

273

Amino Acids

31.04

Weight (kDa)

6.56

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 10 - 73 7.3e-17 Ubiquitin family
Rad60-SLD PF11976 94 - 164 2.7e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 96 - 167 6.3e-15 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05230 AT4G05240 AT4G05260
fragaria_vesca FvH4_2g19820 FvH4_3g02641
malus_domestica MD05G1341200.v1.1 MD05G1341300.v1.1 MD10G1314800.v1.1
prunus_persica Prupe.4G026000_v2.0.a1
pyrus_communis pycom10g26690
rosa_chinensis RchiOBHm_Chr5g0003951
rosa_multiflora Rmu_sc0000547.1_g000007
rosa_roxburghii Rroxscaffold_1G00072020
rosa_samantha Rh5BG035000 Rh5CG038600 Rh5DG034600
rosa_wichuraiana Rw5G003290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 269, 588
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 142
AfaI GTAC 1 cut(s) 804
AfiI CCNNNNNNNGG 6 cut(s) 26, 360, 587, 588, 771, 812
AgeI ACCGGT 1 cut(s) 419
AgsI TTSAA 6 cut(s) 17, 50, 139, 374, 565, 770
AjiI CACGTC 1 cut(s) 306
AjuI GAANNNNNNNTTGG 4 cut(s) 186, 218, 499, 531
AluBI AGCT 9 cut(s) 208, 253, 286, 492, 512, 521, 568, 640, 699
AluI AGCT 9 cut(s) 208, 253, 286, 492, 512, 521, 568, 640, 699
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 545
AoxI GGCC 2 cut(s) 32, 142
ApeKI GCWGC 2 cut(s) 409, 751
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AseI ATTAAT 1 cut(s) 216
AsiGI ACCGGT 1 cut(s) 419
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 2 cut(s) 546, 547
AsuHPI GGTGA 2 cut(s) 34, 499
AsuNHI GCTAGC 1 cut(s) 754
AvaI CYCGRG 1 cut(s) 545
AvaII GGWCC 1 cut(s) 334
BauI CACGAG 1 cut(s) 793
BbsI GAAGAC 2 cut(s) 127, 302
BbvI GCAGC 2 cut(s) 396, 738
BccI CCATC 3 cut(s) 43, 565, 721
BceAI ACGGC 2 cut(s) 157, 384
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcnI CCSGG 2 cut(s) 546, 547
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 3 cut(s) 74, 131, 755
BisI GCNGC 2 cut(s) 410, 752
BlsI GCNGC 2 cut(s) 411, 753
Bme1390I CCNGG 2 cut(s) 546, 547
Bme18I GGWCC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 545
BmgBI CACGTC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 3 cut(s) 336, 384, 390
BmrFI CCNGG 2 cut(s) 546, 547
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 1 cut(s) 629
BmtI GCTAGC 1 cut(s) 758
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 2 cut(s) 127, 302
Bpu10I CCTNAGC 1 cut(s) 395
BpuEI CTTGAG 2 cut(s) 514, 675
BpuMI CCSGG 2 cut(s) 546, 547
Bsa29I ATCGAT 1 cut(s) 442
BsaI GGTCTC 1 cut(s) 490
BsaJI CCNNGG 3 cut(s) 103, 544, 545
BsaWI WCCGGW 1 cut(s) 419
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 360, 587, 588, 771, 812
Bse118I RCCGGY 2 cut(s) 385, 419
Bse1I ACTGG 2 cut(s) 605, 817
Bse3DI GCAATG 1 cut(s) 537
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 3 cut(s) 103, 544, 545
BseGI GGATG 4 cut(s) 10, 35, 263, 805
BseLI CCNNNNNNNGG 6 cut(s) 26, 360, 587, 588, 771, 812
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 2 cut(s) 605, 817
BseXI GCAGC 2 cut(s) 396, 738
BseYI CCCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 34, 144
BshTI ACCGGT 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 442
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 3 cut(s) 386, 420, 546
BslFI GGGAC 4 cut(s) 305, 487, 526, 604
BslI CCNNNNNNNGG 6 cut(s) 26, 360, 587, 588, 771, 812
BsmAI GTCTC 1 cut(s) 490
BsmFI GGGAC 4 cut(s) 305, 487, 526, 604
BsnI GGCC 2 cut(s) 34, 144
Bso31I GGTCTC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 545
Bsp143I GATC 5 cut(s) 78, 279, 436, 443, 480
BspACI CCGC 2 cut(s) 269, 588
BspANI GGCC 2 cut(s) 34, 144
BspCNI CTCAG 1 cut(s) 633
BspDI ATCGAT 1 cut(s) 442
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 3 cut(s) 336, 384, 390
BspOI GCTAGC 1 cut(s) 758
BspPI GGATC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 2 cut(s) 385, 419
BsrI ACTGG 2 cut(s) 605, 817
BssAI RCCGGY 2 cut(s) 385, 419
BssECI CCNNGG 3 cut(s) 103, 544, 545
BssMI GATC 5 cut(s) 78, 279, 436, 443, 480
BssSI CACGAG 1 cut(s) 793
BssT1I CCWWGG 1 cut(s) 103
Bst2BI CACGAG 1 cut(s) 793
Bst4CI ACNGT 5 cut(s) 70, 179, 349, 501, 774
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 2 cut(s) 395, 641
BstF5I GGATG 4 cut(s) 10, 35, 263, 805
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 5 cut(s) 81, 282, 439, 446, 483
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 5 cut(s) 78, 279, 436, 443, 480
BstMWI GCNNNNNNNGC 2 cut(s) 518, 527
BstNSI RCATGY 2 cut(s) 239, 320
BstSCI CCNGG 2 cut(s) 544, 545
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 396, 738
BstV2I GAAGAC 2 cut(s) 127, 302
BstX2I RGATCY 1 cut(s) 279
BstXI CCANNNNNNTGG 1 cut(s) 331
BstYI RGATCY 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 442
BsuRI GGCC 2 cut(s) 34, 144
BsuTUI ATCGAT 1 cut(s) 442
BtrI CACGTC 1 cut(s) 306
BtsCI GGATG 4 cut(s) 10, 35, 263, 805
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 66, 543, 612
Cac8I GCNNGC 1 cut(s) 756
Cfr10I RCCGGY 2 cut(s) 385, 419
Cfr13I GGNCC 1 cut(s) 334
Cfr9I CCCGGG 1 cut(s) 545
ClaI ATCGAT 1 cut(s) 442
Csp6I GTAC 1 cut(s) 803
CspAI ACCGGT 1 cut(s) 419
CviAII CATG 2 cut(s) 236, 317
CviQI GTAC 1 cut(s) 803
DdeI CTNAG 2 cut(s) 395, 641
DpnI GATC 5 cut(s) 80, 281, 438, 445, 482
DpnII GATC 5 cut(s) 78, 279, 436, 443, 480
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 239, 320
FaiI YATR 5 cut(s) 237, 318, 326, 714, 787
FaqI GGGAC 4 cut(s) 305, 487, 526, 604
FatI CATG 2 cut(s) 235, 316
FauI CCCGC 2 cut(s) 276, 581
Fnu4HI GCNGC 2 cut(s) 410, 752
FokI GGATG 4 cut(s) 17, 22, 250, 812
Fsp4HI GCNGC 2 cut(s) 410, 752
FspBI CTAG 3 cut(s) 74, 131, 755
GluI GCNGC 2 cut(s) 410, 752
GsaI CCCAGC 1 cut(s) 124
HaeIII GGCC 2 cut(s) 34, 144
HapII CCGG 3 cut(s) 386, 420, 546
Hin1II CATG 2 cut(s) 239, 320
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 4 cut(s) 202, 224, 370, 601
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 3 cut(s) 386, 420, 546
HphI GGTGA 2 cut(s) 34, 499
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 5 cut(s) 96, 223, 229, 469, 625
Hpy188III TCNNGA 1 cut(s) 692
Hpy8I GTNNAC 1 cut(s) 616
Hpy99I CGWCG 2 cut(s) 161, 170
HpyAV CCTTC 2 cut(s) 24, 49
HpyCH4III ACNGT 5 cut(s) 70, 179, 349, 501, 774
HpyCH4IV ACGT 2 cut(s) 168, 305
HpyCH4V TGCA 4 cut(s) 316, 412, 476, 655
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 527
HpyF3I CTNAG 2 cut(s) 395, 641
HpySE526I ACGT 2 cut(s) 168, 305
Hsp92II CATG 2 cut(s) 239, 320
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 5 cut(s) 78, 279, 436, 443, 480
LmnI GCTCC 2 cut(s) 382, 637
Lsp1109I GCAGC 2 cut(s) 396, 738
LweI GCATC 1 cut(s) 629
MaeI CTAG 3 cut(s) 74, 131, 755
MaeII ACGT 2 cut(s) 168, 305
MaeIII GTNAC 5 cut(s) 7, 56, 349, 422, 660
MalI GATC 5 cut(s) 80, 281, 438, 445, 482
MboI GATC 5 cut(s) 78, 279, 436, 443, 480
MboII GAAGA 5 cut(s) 127, 289, 307, 379, 697
MflI RGATCY 1 cut(s) 279
MluCI AATT 2 cut(s) 51, 217
MmeI TCCRAC 1 cut(s) 492
MnlI CCTC 9 cut(s) 20, 161, 197, 354, 478, 604, 663, 699, 816
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 2 cut(s) 216, 615
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 512, 521
MspI CCGG 3 cut(s) 386, 420, 546
MspR9I CCNGG 2 cut(s) 546, 547
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 518, 527
NciI CCSGG 2 cut(s) 546, 547
NdeII GATC 5 cut(s) 78, 279, 436, 443, 480
NheI GCTAGC 1 cut(s) 754
NlaIII CATG 2 cut(s) 239, 320
NlaIV GGNNCC 3 cut(s) 336, 384, 390
NmuCI GTSAC 2 cut(s) 7, 349
NspI RCATGY 2 cut(s) 239, 320
PcsI WCGNNNNNNNCGW 4 cut(s) 162, 165, 432, 448
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 4 cut(s) 202, 224, 370, 601
PflFI GACNNNGTC 1 cut(s) 68
PinAI ACCGGT 1 cut(s) 419
PkrI GCNGC 2 cut(s) 411, 753
PshBI ATTAAT 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 120
PspN4I GGNNCC 3 cut(s) 336, 384, 390
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 512, 521
RsaI GTAC 1 cut(s) 804
RsaNI GTAC 1 cut(s) 803
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 2 cut(s) 216, 615
SatI GCNGC 2 cut(s) 410, 752
Sau3AI GATC 5 cut(s) 78, 279, 436, 443, 480
Sau96I GGNCC 1 cut(s) 334
ScrFI CCNGG 2 cut(s) 546, 547
SfaNI GCATC 1 cut(s) 629
SinI GGWCC 1 cut(s) 334
SmaI CCCGGG 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 493, 690
SmoI CTYRAG 2 cut(s) 493, 690
Sse9I AATT 2 cut(s) 51, 217
SsiI CCGC 2 cut(s) 269, 588
SspMI CTAG 3 cut(s) 74, 131, 755
StyD4I CCNGG 2 cut(s) 544, 545
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 5 cut(s) 70, 179, 349, 501, 774
TaiI ACGT 2 cut(s) 171, 308
TaqI TCGA 4 cut(s) 63, 189, 442, 483
TasI AATT 2 cut(s) 51, 217
TfiI GAWTC 4 cut(s) 202, 224, 370, 601
Tru1I TTAA 2 cut(s) 216, 615
Tru9I TTAA 2 cut(s) 216, 615
TscAI CASTG 3 cut(s) 73, 543, 612
TseFI GTSAC 2 cut(s) 7, 349
TseI GCWGC 2 cut(s) 409, 751
Tsp45I GTSAC 2 cut(s) 7, 349
TspDTI ATGAA 2 cut(s) 671, 697
TspMI CCCGGG 1 cut(s) 545
TspRI CASTG 3 cut(s) 73, 543, 612
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 334
VspI ATTAAT 1 cut(s) 216
XceI RCATGY 2 cut(s) 239, 320
XcmI CCANNNNNNNNNTGG 2 cut(s) 250, 792
XmaI CCCGGG 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 3 cut(s) 74, 131, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.