MD05G1347800.v1.1

protein retention in ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015968
Physical Location & Seq
Reverse (-)
46649741 .. 46650442
702 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1347800.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGCTGCCGAAGCACCGGGGTGGGCCGATCAGTGGGGCGCCGGAGGCATTGGAGCACTGGAAGATGCAGAGAGCGCCAAAACGGGAGAAAACGACAGCAGCAACAAGAAGGCAGAGACCAAGTCTGGCTTAGGCAAGGCCAAGGTGGCTGCAATGGCTGGCGCTGAGAAGATCAAGAGCGGCACATCCAACGGCATCAAATGGATCAAAAATCAGTGCCAGAAGAAAAAAACAACCAAACCAGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.55

Weight (kDa)

9.3

Isoelectric Point (pI)

5.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62045
fragaria_vesca FvH4_3g01970
malus_domestica MD05G1347800.v1.1 MD10G1322200.v1.1
prunus_persica Prupe.4G019700_v2.0.a1
pyrus_communis pycom10g27270
rosa_chinensis RchiOBHm_Chr5g0002881
rosa_multiflora Rmu_sc0013603.1_g000008 Rmu_sc0020722.1_g000003
rosa_roxburghii Rroxscaffold_1G00072980
rosa_rugosa Rorug04G0400300
rosa_samantha Rh5AG023300 Rh5CG025900 Rh5DG024400
rosa_wichuraiana Rw5G002170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 33
AleI CACNNNNGTG 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 212
AoxI GGCC 2 cut(s) 24, 138
ApeKI GCWGC 3 cut(s) 5, 99, 149
AspLEI GCGC 3 cut(s) 41, 77, 164
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 111, 136
BceAI ACGGC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 250
BfoI RGCGCY 3 cut(s) 42, 78, 165
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 4 cut(s) 6, 100, 150, 181
BlsI GCNGC 4 cut(s) 7, 101, 151, 182
Bme1390I CCNGG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 18
BmsI GCATC 2 cut(s) 55, 204
Bpu10I CCTNAGC 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 17, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 17, 141
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 111, 136
BshFI GGCC 2 cut(s) 26, 140
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 2 cut(s) 17, 42
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 2 cut(s) 26, 140
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 3 cut(s) 28, 171, 204
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 26, 140
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 17, 141
BssMI GATC 3 cut(s) 28, 171, 204
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 130, 165
BstF5I GGATG 1 cut(s) 185
BstH2I RGCGCY 3 cut(s) 42, 78, 165
BstHHI GCGC 3 cut(s) 41, 77, 164
BstKTI GATC 3 cut(s) 31, 174, 207
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 28, 171, 204
BstMWI GCNNNNNNNGC 5 cut(s) 11, 45, 74, 146, 155
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 2 cut(s) 111, 136
BsuRI GGCC 2 cut(s) 26, 140
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 3 cut(s) 38, 56, 221
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 3 cut(s) 41, 77, 164
Cfr13I GGNCC 1 cut(s) 24
CviJI RGCY 6 cut(s) 5, 26, 129, 140, 149, 158
CviKI_1 RGCY 6 cut(s) 5, 26, 129, 140, 149, 158
DdeI CTNAG 2 cut(s) 130, 165
DinI GGCGCC 1 cut(s) 40
DpnI GATC 3 cut(s) 30, 173, 206
DpnII GATC 3 cut(s) 28, 171, 204
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 141
FalI AAGNNNNNCTT 2 cut(s) 113, 145
Fnu4HI GCNGC 4 cut(s) 6, 100, 150, 181
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 4 cut(s) 6, 100, 150, 181
FspBI CTAG 1 cut(s) 250
GlaI GCGC 3 cut(s) 40, 76, 163
GluI GCNGC 4 cut(s) 6, 100, 150, 181
HaeII RGCGCY 3 cut(s) 42, 78, 165
HaeIII GGCC 2 cut(s) 26, 140
HapII CCGG 2 cut(s) 17, 42
HhaI GCGC 3 cut(s) 41, 77, 164
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 3 cut(s) 39, 75, 162
HinP1I GCGC 3 cut(s) 39, 75, 162
HpaII CCGG 2 cut(s) 17, 42
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 68, 152
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 45, 74, 146, 155
HpyF3I CTNAG 2 cut(s) 130, 165
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 3 cut(s) 39, 75, 162
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 28, 171, 204
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 30, 44, 55, 111, 144, 233
Lsp1109I GCAGC 2 cut(s) 111, 136
LweI GCATC 2 cut(s) 55, 204
MaeI CTAG 1 cut(s) 250
MalI GATC 3 cut(s) 30, 173, 206
MbiI CCGCTC 1 cut(s) 180
MboI GATC 3 cut(s) 28, 171, 204
MboII GAAGA 3 cut(s) 74, 181, 235
MhlI GDGCHC 1 cut(s) 58
Mly113I GGCGCC 1 cut(s) 39
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 2 cut(s) 17, 42
MspR9I CCNGG 1 cut(s) 18
MwoI GCNNNNNNNGC 5 cut(s) 11, 45, 74, 146, 155
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 18
NdeII GATC 3 cut(s) 28, 171, 204
NlaIV GGNNCC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 7, 101, 151, 182
PluTI GGCGCC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 19
SatI GCNGC 4 cut(s) 6, 100, 150, 181
Sau3AI GATC 3 cut(s) 28, 171, 204
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 18
SduI GDGCHC 1 cut(s) 58
SetI ASST 1 cut(s) 147
SfaNI GCATC 2 cut(s) 55, 204
SfoI GGCGCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 19
SsiI CCGC 1 cut(s) 180
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 141
TauI GCSGC 1 cut(s) 183
TscAI CASTG 3 cut(s) 38, 63, 221
TseI GCWGC 3 cut(s) 5, 99, 149
TspRI CASTG 3 cut(s) 38, 63, 221
Tth111I GACNNNGTC 1 cut(s) 121
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.