RchiOBHm_Chr5g0002881

protein retention in ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015968
Physical Location & Seq
Forward (+)
1690526 .. 1691765
1240 bp
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UTR
Exon/CDS
Intron
PRQ28422

Sequence Viewer

Length: 474 bp
ATGAACAGAAGAAGGGCACTAATATTAGGGAAAATGCCAAACGTACAACATATAAATGTGATAGGAGAGCCAGCCCATCATCCACAAGTGGACCCTTTTATTATTGAAGCTTCCTCAAGGTCTCTCTCTCCAATTCTTATTTCTTGGCAAACCCTCCTTTGCTTAAACTACTTCTTCATCTTTCTGAATCTGTACGCTAACAATCTCCAGGGTATTGAAATGGCGACGGAAGCACCAGGGTGGGCGGATCAATGGGGCGCCGGAGGCATCGGTGCATTGGAAGATGAAGACAAGAACAAAAGCCTGGAAGACAACAACAAGAAGAAGGGAGAGACCAAGTCTGGACTAAACAAAGCTAAGGTTGCAGCAATGGCTGGCGCTGAAAAGATCAAAAGTGGCACAACCAATGGCATCAAATGGATCAAAAATCAGTGCCAGAAGAAGAAATCTACCAAGACCCCAACTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.32

Weight (kDa)

9.37

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62045
fragaria_vesca FvH4_3g01970
malus_domestica MD05G1347800.v1.1 MD10G1322200.v1.1
prunus_persica Prupe.4G019700_v2.0.a1
pyrus_communis pycom10g27270
rosa_chinensis RchiOBHm_Chr5g0002881
rosa_multiflora Rmu_sc0013603.1_g000008 Rmu_sc0020722.1_g000003
rosa_roxburghii Rroxscaffold_1G00072980
rosa_rugosa Rorug04G0400300
rosa_samantha Rh5AG023300 Rh5CG025900 Rh5DG024400
rosa_wichuraiana Rw5G002170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 245
AclWI GGATC 2 cut(s) 255, 428
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 45, 194
AgsI TTSAA 2 cut(s) 107, 218
AjnI CCWGG 3 cut(s) 207, 235, 303
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AleI CACNNNNGTG 1 cut(s) 238
AluBI AGCT 2 cut(s) 110, 356
AluI AGCT 2 cut(s) 110, 356
Alw26I GTCTC 2 cut(s) 126, 326
AlwI GGATC 2 cut(s) 255, 428
ApeKI GCWGC 1 cut(s) 365
AspLEI GCGC 2 cut(s) 260, 380
AspS9I GGNCC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 294, 315
BbvI GCAGC 1 cut(s) 377
BccI CCATC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 209, 237, 305
BcoDI GTCTC 2 cut(s) 126, 326
BfoI RGCGCY 2 cut(s) 261, 381
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 3 cut(s) 209, 237, 305
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 93, 259
BmrFI CCNGG 3 cut(s) 209, 237, 305
BmsI GCATC 2 cut(s) 276, 420
BpiI GAAGAC 2 cut(s) 294, 315
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 100
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 2 cut(s) 126, 326
BsaJI CCNNGG 2 cut(s) 208, 236
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 3 cut(s) 209, 237, 305
BseDI CCNNGG 2 cut(s) 208, 236
BseGI GGATG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 19
BseXI GCAGC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 126, 326
Bso31I GGTCTC 2 cut(s) 126, 326
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 247, 387, 420
BspACI CCGC 1 cut(s) 245
BspLI GGNNCC 2 cut(s) 93, 259
BspPI GGATC 2 cut(s) 255, 428
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 2 cut(s) 126, 326
BsrDI GCAATG 1 cut(s) 375
BssECI CCNNGG 2 cut(s) 208, 236
BssMI GATC 3 cut(s) 247, 387, 420
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 3 cut(s) 209, 237, 305
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 72, 376
BstDEI CTNAG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 2 cut(s) 261, 381
BstHHI GCGC 2 cut(s) 260, 380
BstKTI GATC 3 cut(s) 250, 390, 423
BstMAI GTCTC 2 cut(s) 126, 326
BstMBI GATC 3 cut(s) 247, 387, 420
BstMWI GCNNNNNNNGC 4 cut(s) 230, 264, 362, 371
BstNI CCWGG 3 cut(s) 209, 237, 305
BstSCI CCNGG 3 cut(s) 207, 235, 303
BstSLI GKGCMC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 377
BstV2I GAAGAC 2 cut(s) 294, 315
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 437
Cac8I GCNNGC 2 cut(s) 72, 376
CfoI GCGC 2 cut(s) 260, 380
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 44, 193
CviJI RGCY 6 cut(s) 70, 74, 110, 303, 356, 374
CviKI_1 RGCY 6 cut(s) 70, 74, 110, 303, 356, 374
CviQI GTAC 2 cut(s) 44, 193
DdeI CTNAG 1 cut(s) 357
DinI GGCGCC 1 cut(s) 259
DpnI GATC 3 cut(s) 249, 389, 422
DpnII GATC 3 cut(s) 247, 387, 420
EciI GGCGGA 1 cut(s) 260
Eco31I GGTCTC 2 cut(s) 126, 326
Eco47I GGWCC 1 cut(s) 91
EcoRII CCWGG 3 cut(s) 207, 235, 303
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
FaiI YATR 2 cut(s) 51, 53
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 366
GlaI GCGC 2 cut(s) 259, 379
GluI GCNGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 2 cut(s) 261, 381
HapII CCGG 1 cut(s) 261
HhaI GCGC 2 cut(s) 260, 380
Hin1I GRCGYC 1 cut(s) 258
Hin6I GCGC 2 cut(s) 258, 378
HinP1I GCGC 2 cut(s) 258, 378
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 342
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 6, 319
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 275, 365
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 264, 362, 371
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 258
HspAI GCGC 2 cut(s) 258, 378
KasI GGCGCC 1 cut(s) 257
Kzo9I GATC 3 cut(s) 247, 387, 420
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 276, 420
MaeII ACGT 1 cut(s) 42
MalI GATC 3 cut(s) 249, 389, 422
MboI GATC 3 cut(s) 247, 387, 420
MboII GAAGA 8 cut(s) 21, 166, 293, 299, 320, 334, 451, 454
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 258
MnlI CCTC 3 cut(s) 124, 164, 257
MseI TTAA 2 cut(s) 164, 472
MslI CAYNNNNRTG 2 cut(s) 54, 238
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 3 cut(s) 209, 237, 305
MvaI CCWGG 3 cut(s) 209, 237, 305
MwoI GCNNNNNNNGC 4 cut(s) 230, 264, 362, 371
NarI GGCGCC 1 cut(s) 258
NdeII GATC 3 cut(s) 247, 387, 420
NlaIV GGNNCC 2 cut(s) 93, 259
OliI CACNNNNGTG 1 cut(s) 238
PfeI GAWTC 1 cut(s) 187
PflFI GACNNNGTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 261
Psp6I CCWGG 3 cut(s) 207, 235, 303
PspGI CCWGG 3 cut(s) 207, 235, 303
PspN4I GGNNCC 2 cut(s) 93, 259
PspPI GGNCC 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 337
RsaI GTAC 2 cut(s) 45, 194
RsaNI GTAC 2 cut(s) 44, 193
RseI CAYNNNNRTG 2 cut(s) 54, 238
SaqAI TTAA 2 cut(s) 164, 472
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 3 cut(s) 247, 387, 420
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 3 cut(s) 209, 237, 305
SduI GDGCHC 1 cut(s) 19
SetI ASST 5 cut(s) 45, 112, 122, 358, 363
SfaNI GCATC 2 cut(s) 276, 420
SfoI GGCGCC 1 cut(s) 259
SinI GGWCC 1 cut(s) 91
SmiMI CAYNNNNRTG 2 cut(s) 54, 238
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 132
SsiI CCGC 1 cut(s) 245
SspDI GGCGCC 1 cut(s) 257
SspI AATATT 1 cut(s) 24
StyD4I CCNGG 3 cut(s) 207, 235, 303
TaiI ACGT 1 cut(s) 45
TasI AATT 1 cut(s) 132
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 2 cut(s) 164, 472
Tru9I TTAA 2 cut(s) 164, 472
TscAI CASTG 1 cut(s) 437
TseI GCWGC 1 cut(s) 365
TspDTI ATGAA 3 cut(s) 17, 166, 300
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 437
Tth111I GACNNNGTC 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.