Prupe.4G019700_v2.0.a1

protein retention in ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0015968
Physical Location & Seq
Forward (+)
919117 .. 919501
385 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G019700.1

Sequence Viewer

Length: 252 bp
ATGGCAACAGAAGCACCAGGGTGGGCCGACCAATGGGGCGCAGGCGGCATCGGTGCCCTGGAGGATGGAGACAACACCAAAGCCACAGAAAACAGCAGCAACAACAAGAAGGCAGATACCAAGTCTGGATTAGGCAAAGCCAAGGTGGCTGCAATGGCTGGCGCAGAAAAGATCAAAAATGGGACATCCAATGGTATCAAATGGATCAAAAATCAGTGCCAGAAAAAAAAACCTTCTAAACCAGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.6

Weight (kDa)

9.63

Isoelectric Point (pI)

6.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62045
fragaria_vesca FvH4_3g01970
malus_domestica MD05G1347800.v1.1 MD10G1322200.v1.1
prunus_persica Prupe.4G019700_v2.0.a1
pyrus_communis pycom10g27270
rosa_chinensis RchiOBHm_Chr5g0002881
rosa_multiflora Rmu_sc0013603.1_g000008 Rmu_sc0020722.1_g000003
rosa_roxburghii Rroxscaffold_1G00072980
rosa_rugosa Rorug04G0400300
rosa_samantha Rh5AG023300 Rh5CG025900 Rh5DG024400
rosa_wichuraiana Rw5G002170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 33
AjnI CCWGG 2 cut(s) 16, 57
AleI CACNNNNGTG 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 96, 149
AspLEI GCGC 2 cut(s) 41, 164
AspS9I GGNCC 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 108, 136
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 18, 59
BcoDI GTCTC 1 cut(s) 63
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 3 cut(s) 46, 97, 150
BlsI GCNGC 3 cut(s) 47, 98, 151
Bme1390I CCNGG 2 cut(s) 18, 59
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 18, 59
BmsI GCATC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 80
BsaJI CCNNGG 3 cut(s) 17, 57, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 2 cut(s) 18, 59
BseDI CCNNGG 3 cut(s) 17, 57, 141
BseGI GGATG 2 cut(s) 70, 185
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 2 cut(s) 108, 136
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 171, 204
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 17, 57, 141
BssMI GATC 2 cut(s) 171, 204
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 18, 59
BstC8I GCNNGC 2 cut(s) 43, 160
BstF5I GGATG 2 cut(s) 70, 185
BstHHI GCGC 2 cut(s) 41, 164
BstKTI GATC 2 cut(s) 174, 207
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 171, 204
BstMWI GCNNNNNNNGC 4 cut(s) 11, 45, 146, 155
BstNI CCWGG 2 cut(s) 18, 59
BstSCI CCNGG 2 cut(s) 16, 57
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 108, 136
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 70, 185
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 43, 160
CfoI GCGC 2 cut(s) 41, 164
Cfr13I GGNCC 1 cut(s) 24
CviJI RGCY 5 cut(s) 26, 83, 140, 149, 158
CviKI_1 RGCY 5 cut(s) 26, 83, 140, 149, 158
DpnI GATC 2 cut(s) 173, 206
DpnII GATC 2 cut(s) 171, 204
Eco130I CCWWGG 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 16, 57
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaqI GGGAC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 46, 97, 150
FokI GGATG 2 cut(s) 77, 172
Fsp4HI GCNGC 3 cut(s) 46, 97, 150
GlaI GCGC 2 cut(s) 40, 163
GluI GCNGC 3 cut(s) 46, 97, 150
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 1 cut(s) 26
HhaI GCGC 2 cut(s) 41, 164
Hin6I GCGC 2 cut(s) 39, 162
HinP1I GCGC 2 cut(s) 39, 162
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 103, 243
HpyCH4V TGCA 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 45, 146, 155
HspAI GCGC 2 cut(s) 39, 162
Kzo9I GATC 2 cut(s) 171, 204
LpnPI CCDG 8 cut(s) 3, 27, 30, 44, 71, 111, 144, 233
Lsp1109I GCAGC 2 cut(s) 108, 136
LweI GCATC 1 cut(s) 57
MalI GATC 2 cut(s) 173, 206
MboI GATC 2 cut(s) 171, 204
MhlI GDGCHC 1 cut(s) 58
MnlI CCTC 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 19
MspR9I CCNGG 2 cut(s) 18, 59
MvaI CCWGG 2 cut(s) 18, 59
MwoI GCNNNNNNNGC 4 cut(s) 11, 45, 146, 155
NdeII GATC 2 cut(s) 171, 204
NlaIV GGNNCC 1 cut(s) 55
OliI CACNNNNGTG 1 cut(s) 19
PkrI GCNGC 3 cut(s) 47, 98, 151
Psp6I CCWGG 2 cut(s) 16, 57
PspGI CCWGG 2 cut(s) 16, 57
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 19
SatI GCNGC 3 cut(s) 46, 97, 150
Sau3AI GATC 2 cut(s) 171, 204
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 18, 59
SduI GDGCHC 1 cut(s) 58
SetI ASST 2 cut(s) 147, 235
SfaNI GCATC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 19
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 16, 57
StyI CCWWGG 1 cut(s) 141
TauI GCSGC 1 cut(s) 48
TscAI CASTG 1 cut(s) 221
TseI GCWGC 2 cut(s) 96, 149
TspRI CASTG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.