MD10G1322200.v1.1

protein retention in ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015968
Physical Location & Seq
Reverse (-)
40371354 .. 40372206
853 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1322200.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGCTGCCGAAGCACCGGGGTGGGCAGATCAATGGGGTGCCGGAGGCATCGGCGCACTGGAAGATGCAGACAACACCAGGACGGAAGAAAACGACAGCAGCAACAAGAAGGCAGAGACCAAGTCTGGCATAGGCAAAGCCAAGGTGGCTGCAATGGCCGGTGCCGAAAAGATCAAGAGCGGCACGTCCAATGGCATCAAATGGATCAAAAATCAGTGCCAGAAGAAAAAACCAACCAAACCAGTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.67

Weight (kDa)

9.34

Isoelectric Point (pI)

10.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62045
fragaria_vesca FvH4_3g01970
malus_domestica MD05G1347800.v1.1 MD10G1322200.v1.1
prunus_persica Prupe.4G019700_v2.0.a1
pyrus_communis pycom10g27270
rosa_chinensis RchiOBHm_Chr5g0002881
rosa_multiflora Rmu_sc0013603.1_g000008 Rmu_sc0020722.1_g000003
rosa_roxburghii Rroxscaffold_1G00072980
rosa_rugosa Rorug04G0400300
rosa_samantha Rh5AG023300 Rh5CG025900 Rh5DG024400
rosa_wichuraiana Rw5G002170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 38, 161
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 156
AjiI CACGTC 1 cut(s) 186
AjnI CCWGG 1 cut(s) 77
AleI CACNNNNGTG 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 5, 99, 149
AspLEI GCGC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 18
BanI GGYRCC 2 cut(s) 38, 161
BbvI GCAGC 2 cut(s) 111, 136
BciT130I CCWGG 1 cut(s) 79
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 4 cut(s) 6, 100, 150, 181
BlsI GCNGC 4 cut(s) 7, 101, 151, 182
Bme1390I CCNGG 2 cut(s) 18, 79
BmgBI CACGTC 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 40, 163
BmrFI CCNGG 2 cut(s) 18, 79
BmsI GCATC 3 cut(s) 55, 57, 204
BpuMI CCSGG 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 17, 141
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 63, 242
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 17, 141
BseMI GCAATG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 63, 242
BseXI GCAGC 2 cut(s) 111, 136
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 2 cut(s) 38, 161
BsiSI CCGG 3 cut(s) 17, 42, 159
BsmAI GTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 28, 171, 204
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 158
BspLI GGNNCC 2 cut(s) 40, 163
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 2 cut(s) 38, 161
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 63, 242
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 17, 141
BssMI GATC 3 cut(s) 28, 171, 204
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 31, 174, 207
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 28, 171, 204
BstMWI GCNNNNNNNGC 3 cut(s) 11, 146, 155
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 2 cut(s) 16, 77
BstV1I GCAGC 2 cut(s) 111, 136
BsuRI GGCC 1 cut(s) 158
BtrI CACGTC 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 56, 221
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 158
CviJI RGCY 4 cut(s) 5, 140, 149, 158
CviKI_1 RGCY 4 cut(s) 5, 140, 149, 158
DpnI GATC 3 cut(s) 30, 173, 206
DpnII GATC 3 cut(s) 28, 171, 204
EaeI YGGCCR 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaiI YATR 1 cut(s) 131
Fnu4HI GCNGC 4 cut(s) 6, 100, 150, 181
Fsp4HI GCNGC 4 cut(s) 6, 100, 150, 181
FspBI CTAG 1 cut(s) 250
GlaI GCGC 1 cut(s) 55
GluI GCNGC 4 cut(s) 6, 100, 150, 181
HaeIII GGCC 1 cut(s) 158
HapII CCGG 3 cut(s) 17, 42, 159
HhaI GCGC 1 cut(s) 56
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HpaII CCGG 3 cut(s) 17, 42, 159
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 68, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 146, 155
HpySE526I ACGT 1 cut(s) 185
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 3 cut(s) 28, 171, 204
LpnPI CCDG 8 cut(s) 30, 44, 55, 64, 91, 111, 172, 233
Lsp1109I GCAGC 2 cut(s) 111, 136
LweI GCATC 3 cut(s) 55, 57, 204
MaeI CTAG 1 cut(s) 250
MaeII ACGT 1 cut(s) 185
MalI GATC 3 cut(s) 30, 173, 206
MbiI CCGCTC 1 cut(s) 180
MboI GATC 3 cut(s) 28, 171, 204
MboII GAAGA 3 cut(s) 74, 98, 235
MnlI CCTC 1 cut(s) 38
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 3 cut(s) 17, 42, 159
MspR9I CCNGG 2 cut(s) 18, 79
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 3 cut(s) 11, 146, 155
NciI CCSGG 1 cut(s) 18
NdeII GATC 3 cut(s) 28, 171, 204
NlaIV GGNNCC 2 cut(s) 40, 163
OliI CACNNNNGTG 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 7, 101, 151, 182
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 40, 163
PsyI GACNNNGTC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 19
SatI GCNGC 4 cut(s) 6, 100, 150, 181
Sau3AI GATC 3 cut(s) 28, 171, 204
ScrFI CCNGG 2 cut(s) 18, 79
SetI ASST 2 cut(s) 147, 188
SfaNI GCATC 3 cut(s) 55, 57, 204
SmiMI CAYNNNNRTG 1 cut(s) 19
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 250
StyD4I CCNGG 2 cut(s) 16, 77
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 188
TauI GCSGC 1 cut(s) 183
TscAI CASTG 2 cut(s) 63, 221
TseI GCWGC 3 cut(s) 5, 99, 149
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 2 cut(s) 63, 221
Tth111I GACNNNGTC 1 cut(s) 121
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.