Rh5CG025900

protein retention in ER lumen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015968
Physical Location & Seq
Forward (+)
1608994 .. 1609248
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG025900.1

Sequence Viewer

Length: 255 bp
ATGGCGACGGAAGCACCGGGGTGGGCGGATCAATGGGGCGCCGGAGGCATCGGTGCATTGGAAGATGAAGACAAGAACAAAAGCCTGGAAGACAACAAGAAGAAGAAGGGAGAGACAAAGTCTGGACTAAACAAAGCTAAGGTTGCAGCAATGGCTGGCGCTGAAAAGATCAAAAGTGGCACAACCAATGGCATCAAATGGATCAAAAATCAGTGCCAGAAGAAGAAATCTACCAAGACCCCAACTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.96

Weight (kDa)

9.52

Isoelectric Point (pI)

13.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G62045
fragaria_vesca FvH4_3g01970
malus_domestica MD05G1347800.v1.1 MD10G1322200.v1.1
prunus_persica Prupe.4G019700_v2.0.a1
pyrus_communis pycom10g27270
rosa_chinensis RchiOBHm_Chr5g0002881
rosa_multiflora Rmu_sc0013603.1_g000008 Rmu_sc0020722.1_g000003
rosa_roxburghii Rroxscaffold_1G00072980
rosa_rugosa Rorug04G0400300
rosa_samantha Rh5AG023300 Rh5CG025900 Rh5DG024400
rosa_wichuraiana Rw5G002170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 1 cut(s) 26
AclWI GGATC 2 cut(s) 36, 209
AcyI GRCGYC 1 cut(s) 39
AjnI CCWGG 1 cut(s) 84
AleI CACNNNNGTG 1 cut(s) 19
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 2 cut(s) 36, 209
ApeKI GCWGC 1 cut(s) 146
AspLEI GCGC 2 cut(s) 41, 161
AsuC2I CCSGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 75, 96
BbvI GCAGC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 107
BfoI RGCGCY 2 cut(s) 42, 162
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 18, 86
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 18, 86
BmsI GCATC 2 cut(s) 57, 201
BpiI GAAGAC 2 cut(s) 75, 96
Bpu10I CCTNAGC 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 38
BsiSI CCGG 2 cut(s) 17, 42
BsmAI GTCTC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 28, 168, 201
BspACI CCGC 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 2 cut(s) 36, 209
BspT107I GGYRCC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 28, 168, 201
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 138
BstH2I RGCGCY 2 cut(s) 42, 162
BstHHI GCGC 2 cut(s) 41, 161
BstKTI GATC 3 cut(s) 31, 171, 204
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 28, 168, 201
BstMWI GCNNNNNNNGC 4 cut(s) 11, 45, 143, 152
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 16, 84
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 2 cut(s) 75, 96
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 2 cut(s) 41, 161
CviJI RGCY 3 cut(s) 84, 137, 155
CviKI_1 RGCY 3 cut(s) 84, 137, 155
DdeI CTNAG 1 cut(s) 138
DinI GGCGCC 1 cut(s) 40
DpnI GATC 3 cut(s) 30, 170, 203
DpnII GATC 3 cut(s) 28, 168, 201
EciI GGCGGA 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 2 cut(s) 40, 160
GluI GCNGC 1 cut(s) 147
HaeII RGCGCY 2 cut(s) 42, 162
HapII CCGG 2 cut(s) 17, 42
HhaI GCGC 2 cut(s) 41, 161
Hin1I GRCGYC 1 cut(s) 39
Hin6I GCGC 2 cut(s) 39, 159
HinP1I GCGC 2 cut(s) 39, 159
HpaII CCGG 2 cut(s) 17, 42
Hpy188III TCNNGA 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 56, 146
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 45, 143, 152
HpyF3I CTNAG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 39
HspAI GCGC 2 cut(s) 39, 159
KasI GGCGCC 1 cut(s) 38
Kzo9I GATC 3 cut(s) 28, 168, 201
LpnPI CCDG 7 cut(s) 30, 55, 71, 98, 108, 141, 230
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 2 cut(s) 57, 201
MalI GATC 3 cut(s) 30, 170, 203
MboI GATC 3 cut(s) 28, 168, 201
MboII GAAGA 7 cut(s) 74, 80, 101, 112, 115, 232, 235
Mly113I GGCGCC 1 cut(s) 39
MnlI CCTC 1 cut(s) 38
MseI TTAA 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 2 cut(s) 17, 42
MspR9I CCNGG 2 cut(s) 18, 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 4 cut(s) 11, 45, 143, 152
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 18
NdeII GATC 3 cut(s) 28, 168, 201
NlaIV GGNNCC 1 cut(s) 40
OliI CACNNNNGTG 1 cut(s) 19
PflFI GACNNNGTC 1 cut(s) 118
PkrI GCNGC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 253
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 3 cut(s) 28, 168, 201
ScrFI CCNGG 2 cut(s) 18, 86
SetI ASST 2 cut(s) 139, 144
SfaNI GCATC 2 cut(s) 57, 201
SfoI GGCGCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 19
SsiI CCGC 1 cut(s) 26
SspDI GGCGCC 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 16, 84
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.