MD05G1354500.v1.1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010763
Physical Location & Seq
Forward (+)
47103561 .. 47104635
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1354500.v1.1.491

Sequence Viewer

Length: 228 bp
ATGTACAATGAGAAACTAAAGCCCTTGGAACTTGCATATCGTTTCAACGATTTTGCATCTCCATTGTTAACTGATAGTGATTTTGATTCTAAACCCATGGTCATGCTTTTGGGTCAGTATTCAACTGGGAAAACAACATTTATTAAACATTTGTTACGATGCAACTATCCAGGAGCTCACATTGGACCAGAACCTACTACAGATGGATTCGTTGTAGTGATGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

76

Amino Acids

8.47

Weight (kDa)

6.02

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EHD_N PF16880 1 - 29 1.1e-14 N-terminal EH-domain containing protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 46, 123
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 2 cut(s) 197, 214
BciT130I CCWGG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 65, 149
BmuI ACTGGG 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 24, 96
Bse1I ACTGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 24, 96
BseNI ACTGG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 24, 96
BssT1I CCWWGG 2 cut(s) 24, 96
Bst2UI CCWGG 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 3
BstDSI CCRYGG 1 cut(s) 96
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 97, 103
CviJI RGCY 2 cut(s) 22, 176
CviKI_1 RGCY 2 cut(s) 22, 176
CviQI GTAC 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 24, 96
Eco24I GRGCYC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 24, 96
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 2 cut(s) 24, 96
FaeI CATG 2 cut(s) 100, 106
FaiI YATR 4 cut(s) 37, 98, 104, 226
FatI CATG 2 cut(s) 96, 102
FriOI GRGCYC 1 cut(s) 178
Hin1II CATG 2 cut(s) 100, 106
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 2 cut(s) 86, 207
HpaI GTTAAC 1 cut(s) 69
Hpy166II GTNNAC 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 35, 56, 162
Hsp92II CATG 2 cut(s) 100, 106
KspAI GTTAAC 1 cut(s) 69
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 4 cut(s) 111, 156, 183, 201
LweI GCATC 2 cut(s) 65, 149
MaeIII GTNAC 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 178
MseI TTAA 2 cut(s) 68, 144
MslI CAYNNNNRTG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 96
NlaIII CATG 2 cut(s) 100, 106
PfeI GAWTC 2 cut(s) 86, 207
PfoI TCCNGGA 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 101
SacI GAGCTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 68, 144
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 178, 196
SfaNI GCATC 2 cut(s) 65, 149
SfcI CTRYAG 1 cut(s) 198
SgeI CNNG 8 cut(s) 37, 44, 109, 115, 138, 182, 183, 200
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 101
SstI GAGCTC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 2 cut(s) 24, 96
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 86, 207
Tru1I TTAA 2 cut(s) 68, 144
Tru9I TTAA 2 cut(s) 68, 144
VpaK11BI GGWCC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.