Prupe.4G043100_v2.0.a1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010763
Physical Location & Seq
Forward (+)
2058175 .. 2062262
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G043100.1

Sequence Viewer

Length: 888 bp
ATGACGGAGATGGTCGCATTACAGGTCACGAAGCGACTAAGTTCTTCGCAGCTTTCTCGACAAGAACTCAAGCAGGTTTGGGCCATTGCTGATGAAAAGCGGCAGGGCTTCTTAGCTTTCGTTTTTGCAGTGAAGGTGATTTTAGGATATTCTTTCCTTTTTCTTTTTTTTCTTTTTTTGGTGCTGATATTTGATTGGGAAAACATTAAACCTCCAGTTATGGAAGGTTTGGATGCTCTGACAGCCGTGTTTTTTCTTTGGACAAAATTTTCTTTTAATCTACATATCAACTTGTTTTTACATATTTATAAAGGTATGTCTTCTTTTCCTTACTGCCTGACTTGTTCAAGTTGGTTTCTTCAGCTACCACTTGATGGCGTCACATCTATAGTTGATGGTTTGAAGATATTGTACGGAAAAACACTAAGGCCACTGGAACTTACATATAATTTCAATGATTTTGTATCTCCATCATTGACCGATGGCGATTTTGATGCTAAGCCGATGGTCTTGTTCTTGGGTCAGTATTTGACCGGAAAAACTACATTCGTTAAACATTTGCTAAATGTAGCTATCCAGGTTGTAGCTCATATTGGACTAGAACCTGCAAATGACAGATTTGTGGTTGTGATGTCCGGACCTGATGCAAGAAGGAGCATACCTGGAAATACCATAGCTGTGAATGCAGACCTTCTTTTCAGTGGTCTAGCAAGTTTTGGAGGCTCATTTCTGTCAAAATTTGAGTCTAAGGCTCAACAACGACTAATTGACAATCTTGAAGATGAATTTGCAAAGAGGGAGTTGCATCTACCAGCAGGTGATTTCCCAGATGTGGTGTGCTTTAGAGAGGTGTTGGAAGGTTACGACGTTGACAAACTTGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

296

Amino Acids

33.37

Weight (kDa)

5.59

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AarI CACCTGC 1 cut(s) 806
Acc36I ACCTGC 3 cut(s) 64, 613, 806
AccB7I CCANNNNNTGG 1 cut(s) 374
AccIII TCCGGA 1 cut(s) 635
AciI CCGC 1 cut(s) 100
AcsI RAATTY 3 cut(s) 266, 737, 785
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 374, 832
AgsI TTSAA 4 cut(s) 348, 403, 454, 779
AjnI CCWGG 2 cut(s) 576, 661
AluBI AGCT 6 cut(s) 52, 116, 364, 572, 587, 677
AluI AGCT 6 cut(s) 52, 116, 364, 572, 587, 677
Aor13HI TCCGGA 1 cut(s) 635
AoxI GGCC 2 cut(s) 81, 428
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 3 cut(s) 266, 737, 785
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AspS9I GGNCC 2 cut(s) 81, 638
AsuHPI GGTGA 2 cut(s) 148, 830
AvaII GGWCC 1 cut(s) 638
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 61
BccI CCATC 6 cut(s) 4, 368, 389, 476, 478, 499
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 476, 510
BciT130I CCWGG 2 cut(s) 578, 663
BfaI CTAG 2 cut(s) 599, 707
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 3 cut(s) 64, 613, 806
BisI GCNGC 2 cut(s) 50, 101
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 2 cut(s) 51, 102
Bme1390I CCNGG 2 cut(s) 578, 663
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 81, 638
BmrFI CCNGG 2 cut(s) 578, 663
BmsI GCATC 4 cut(s) 223, 484, 634, 814
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 198
Bpu1102I GCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 378
BsaWI WCCGGW 2 cut(s) 533, 635
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 832
Bse1I ACTGG 2 cut(s) 215, 438
Bse3DI GCAATG 1 cut(s) 84
BseAI TCCGGA 1 cut(s) 635
BseBI CCWGG 2 cut(s) 578, 663
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 374, 832
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 215, 438
BseXI GCAGC 1 cut(s) 61
BshFI GGCC 2 cut(s) 83, 430
BsiSI CCGG 2 cut(s) 534, 636
BslI CCNNNNNNNGG 2 cut(s) 374, 832
BsmI GAATGC 1 cut(s) 688
BsnI GGCC 2 cut(s) 83, 430
Bsp13I TCCGGA 1 cut(s) 635
Bsp1720I GCTNAGC 1 cut(s) 498
BspACI CCGC 1 cut(s) 100
BspANI GGCC 2 cut(s) 83, 430
BspEI TCCGGA 1 cut(s) 635
BspMI ACCTGC 3 cut(s) 64, 613, 806
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 215, 438
BssNI GRCGYC 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 578, 663
BstACI GRCGYC 1 cut(s) 378
BstDEI CTNAG 5 cut(s) 38, 112, 425, 498, 747
BstF5I GGATG 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 242, 683
BstNI CCWGG 2 cut(s) 578, 663
BstSCI CCNGG 2 cut(s) 576, 661
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 83, 430
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 3 cut(s) 135, 431, 706
BveI ACCTGC 3 cut(s) 64, 613, 806
Cfr13I GGNCC 2 cut(s) 81, 638
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 412
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 5 cut(s) 38, 112, 425, 498, 747
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 344
EcoRII CCWGG 2 cut(s) 576, 661
Fnu4HI GCNGC 2 cut(s) 50, 101
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 2 cut(s) 50, 101
FspBI CTAG 2 cut(s) 599, 707
GluI GCNGC 2 cut(s) 50, 101
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 83, 430
HapII CCGG 2 cut(s) 534, 636
HgaI GACGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 1 cut(s) 743
HpaII CCGG 2 cut(s) 534, 636
HphI GGTGA 2 cut(s) 148, 830
Hpy166II GTNNAC 1 cut(s) 871
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 4 cut(s) 28, 57, 636, 776
Hpy8I GTNNAC 1 cut(s) 871
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 5 cut(s) 127, 218, 645, 701, 851
HpyCH4IV ACGT 1 cut(s) 867
HpyCH4V TGCA 6 cut(s) 128, 608, 647, 686, 791, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 683
HpyF3I CTNAG 5 cut(s) 38, 112, 425, 498, 747
HpySE526I ACGT 1 cut(s) 867
Hsp92I GRCGYC 1 cut(s) 378
Kpn2I TCCGGA 1 cut(s) 635
LmnI GCTCC 1 cut(s) 654
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 4 cut(s) 223, 484, 634, 814
MaeI CTAG 2 cut(s) 599, 707
MaeII ACGT 1 cut(s) 867
MaeIII GTNAC 3 cut(s) 25, 379, 860
MboII GAAGA 5 cut(s) 36, 312, 350, 415, 791
MluCI AATT 5 cut(s) 266, 448, 737, 765, 785
MlyI GAGTC 1 cut(s) 752
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 5 cut(s) 222, 713, 789, 841, 876
MroI TCCGGA 1 cut(s) 635
MseI TTAA 3 cut(s) 207, 276, 552
MslI CAYNNNNRTG 1 cut(s) 677
MspI CCGG 2 cut(s) 534, 636
MspR9I CCNGG 2 cut(s) 578, 663
Mva1269I GAATGC 1 cut(s) 688
MvaI CCWGG 2 cut(s) 578, 663
MwoI GCNNNNNNNGC 2 cut(s) 242, 683
NmuCI GTSAC 2 cut(s) 25, 379
PaqCI CACCTGC 1 cut(s) 806
PctI GAATGC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 2 cut(s) 51, 102
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 576, 661
PspGI CCWGG 2 cut(s) 576, 661
PspPI GGNCC 2 cut(s) 81, 638
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 677
SaqAI TTAA 3 cut(s) 207, 276, 552
SatI GCNGC 2 cut(s) 50, 101
Sau96I GGNCC 2 cut(s) 81, 638
SchI GAGTC 1 cut(s) 752
ScrFI CCNGG 2 cut(s) 578, 663
SfaNI GCATC 4 cut(s) 223, 484, 634, 814
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 1 cut(s) 638
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 2 cut(s) 68, 878
SmoI CTYRAG 2 cut(s) 68, 878
Sse9I AATT 5 cut(s) 266, 448, 737, 765, 785
SsiI CCGC 1 cut(s) 100
SspMI CTAG 2 cut(s) 599, 707
StyD4I CCNGG 2 cut(s) 576, 661
TaiI ACGT 1 cut(s) 870
TaqI TCGA 1 cut(s) 58
TaqII GACCGA 1 cut(s) 494
TasI AATT 5 cut(s) 266, 448, 737, 765, 785
TauI GCSGC 1 cut(s) 103
Tru1I TTAA 3 cut(s) 207, 276, 552
Tru9I TTAA 3 cut(s) 207, 276, 552
TscAI CASTG 3 cut(s) 135, 438, 706
TseFI GTSAC 2 cut(s) 25, 379
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 2 cut(s) 25, 379
TspDTI ATGAA 2 cut(s) 108, 798
TspGWI ACGGA 2 cut(s) 20, 429
TspRI CASTG 3 cut(s) 135, 438, 706
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 3 cut(s) 266, 737, 785
XspI CTAG 2 cut(s) 599, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.