Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010763

Physical Location & Seq

Genomic Coordinates Forward (+)

31702148 .. 31704253

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATTTCTTTAGCACAAGACCATGAATTAACCCCCGACATCCTCAAAACTACAGTTGATTGGGAAAACATTAAACCTCCAGTTATAGAAGGTTTGGATGATTTGGTAGCTACTAGTAGTGATTTTGATTCTAAACCTATGGTCATGCTTTTGGGTCAGTATTCAACTGGGAAAACAACATTTATTAAACATTTGTTACGATGCAACTATCCAGGAGCTCACATTGGACCAGAACCTACTACAGATAGATTCGTTGTAGTGATGTCTGGACCTGATGAGAGGAGTATTCCCGGAAATACTATAGTTGTTCATGCAGACATGCCTTTCAGTGGTCTAACAACTTTCGGAGGTGCATTTTTGTCAAAATTTGAGTGTTCACAAATGCCACATCCAGTGAGTTTTGAAATTTTTGTAATCTTCTATTTATATAGCATTTCTTTGCTAGATGAAATTACATTTGTAGACACCCCTGGAGTTCTATCTGGAGAACAGCAAACAACAAATTTTGAACATGGTTATCCTAGCTTTGCAGTTTCTGTTGGATTTTTATTTCGAGGAAGACCTGTTGCTGCTGCCGTGATAGAGTTCGTTGGGGGCCCCATGTGTTGGAATACCTGCATTTTTTCTGCTAGTGCTGTTATGGAAGTTCTGCTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

220

Amino Acids

24.01

Weight (kDa)

4.72

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05520 AT4G05520
fragaria_vesca	FvH4_3g01170
malus_domestica	MD05G1354500.v1.1 MD10G1329000.v1.1
prunus_persica	Prupe.4G013000_v2.0.a1 Prupe.4G043100_v2.0.a1 Prupe.4G043100_v2.0.a1
pyrus_communis	pycom05g32180
rosa_chinensis	RchiOBHm_Chr5g0001731
rosa_laevigata	RLG00000030963
rosa_multiflora	Rmu_sc0008119.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071190 Rroxscaffold_1G00074580
rosa_rugosa	Rorug04G0392200
rosa_samantha	Rh5AG013700 Rh5BG017100 Rh5CG014700 Rh5DG015200
rosa_wichuraiana	Rw5G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	462
AcsI	RAATTY	3 cut(s)	365, 405, 502
AfiI	CCNNNNNNNGG	2 cut(s)	329, 606
AgsI	TTSAA	3 cut(s)	165, 404, 509
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	2 cut(s)	211, 469
AluBI	AGCT	3 cut(s)	110, 218, 525
AluI	AGCT	3 cut(s)	110, 218, 525
Alw21I	GWGCWC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	595
ApaI	GGGCCC	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	569, 572
ApoI	RAATTY	3 cut(s)	365, 405, 502
AspS9I	GGNCC	4 cut(s)	227, 269, 595, 596
AsuC2I	CCSGG	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	227, 269
BaeGI	GKGCMC	1 cut(s)	599
BanII	GRGCYC	2 cut(s)	220, 599
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	556, 559
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	213, 471
BcnI	CCSGG	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	4 cut(s)	114, 443, 522, 630
BfmI	CTRYAG	3 cut(s)	51, 240, 300
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	2 cut(s)	570, 573
BlsI	GCNGC	2 cut(s)	571, 574
Bme1390I	CCNGG	3 cut(s)	213, 291, 471
Bme18I	GGWCC	2 cut(s)	227, 269
BmgT120I	GGNCC	4 cut(s)	227, 269, 595, 596
BmiI	GGNNCC	3 cut(s)	596, 597, 598
BmrFI	CCNGG	3 cut(s)	213, 291, 471
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	565
BpmI	CTGGAG	3 cut(s)	63, 492, 504
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 606
Bse1I	ACTGG	3 cut(s)	80, 172, 392
BseBI	CCWGG	2 cut(s)	213, 471
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	3 cut(s)	39, 103, 388
BseLI	CCNNNNNNNGG	2 cut(s)	329, 606
BseNI	ACTGG	3 cut(s)	80, 172, 392
BseRI	GAGGAG	1 cut(s)	295
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	2 cut(s)	556, 559
BshFI	GGCC	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	329, 606
BsnI	GGCC	1 cut(s)	597
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	220, 599
BspANI	GGCC	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	596, 597, 598
BspMI	ACCTGC	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	80, 172, 392
BssECI	CCNNGG	1 cut(s)	469
Bst2UI	CCWGG	2 cut(s)	213, 471
Bst4CI	ACNGT	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	39, 103, 388
BstNI	CCWGG	2 cut(s)	213, 471
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	211, 289, 469
BstSFI	CTRYAG	3 cut(s)	51, 240, 300
BstSLI	GKGCMC	1 cut(s)	599
BstV1I	GCAGC	2 cut(s)	556, 559
BstV2I	GAAGAC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	39, 103, 388
BtsIMutI	CAGTG	2 cut(s)	334, 399
BveI	ACCTGC	1 cut(s)	623
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	4 cut(s)	227, 269, 595, 596
CviAII	CATG	6 cut(s)	23, 145, 311, 319, 512, 601
CviJI	RGCY	4 cut(s)	110, 218, 525, 597
CviKI_1	RGCY	4 cut(s)	110, 218, 525, 597
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	2 cut(s)	220, 599
Eco47I	GGWCC	2 cut(s)	227, 269
Eco53kI	GAGCTC	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	595, 596
EcoRII	CCWGG	2 cut(s)	211, 469
EcoT38I	GRGCYC	2 cut(s)	220, 599
FaeI	CATG	6 cut(s)	26, 148, 314, 322, 515, 604
FalI	AAGNNNNNCTT	1 cut(s)	636
FatI	CATG	6 cut(s)	22, 144, 310, 318, 511, 600
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	2 cut(s)	570, 573
FokI	GGATG	3 cut(s)	26, 110, 375
FriOI	GRGCYC	2 cut(s)	220, 599
Fsp4HI	GCNGC	2 cut(s)	570, 573
FspBI	CTAG	4 cut(s)	114, 443, 522, 630
GluI	GCNGC	2 cut(s)	570, 573
GsuI	CTGGAG	3 cut(s)	63, 492, 504
HaeIII	GGCC	1 cut(s)	597
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	6 cut(s)	26, 148, 314, 322, 515, 604
HinfI	GANTC	2 cut(s)	128, 249
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	377, 463
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	2 cut(s)	267, 483
Hpy8I	GTNNAC	2 cut(s)	377, 463
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	5 cut(s)	204, 314, 353, 530, 618
Hsp92II	CATG	6 cut(s)	26, 148, 314, 322, 515, 604
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	2 cut(s)	556, 559
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	4 cut(s)	114, 443, 522, 630
MaeIII	GTNAC	1 cut(s)	195
MboII	GAAGA	2 cut(s)	409, 570
MhlI	GDGCHC	2 cut(s)	220, 599
MluCI	AATT	5 cut(s)	26, 365, 405, 450, 502
MmeI	TCCRAC	2 cut(s)	520, 587
MnlI	CCTC	5 cut(s)	53, 87, 273, 341, 548
MseI	TTAA	4 cut(s)	29, 72, 186, 654
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	213, 291, 471
MvaI	CCWGG	2 cut(s)	213, 471
NciI	CCSGG	1 cut(s)	291
NlaIII	CATG	6 cut(s)	26, 148, 314, 322, 515, 604
NlaIV	GGNNCC	3 cut(s)	596, 597, 598
NspI	RCATGY	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	128, 249
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	2 cut(s)	211, 289
PkrI	GCNGC	2 cut(s)	571, 574
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	211, 469
PspGI	CCWGG	2 cut(s)	211, 469
PspN4I	GGNNCC	3 cut(s)	596, 597, 598
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	4 cut(s)	227, 269, 595, 596
PstNI	CAGNNNCTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	4 cut(s)	29, 72, 186, 654
SatI	GCNGC	2 cut(s)	570, 573
Sau96I	GGNCC	4 cut(s)	227, 269, 595, 596
ScrFI	CCNGG	3 cut(s)	213, 291, 471
SduI	GDGCHC	2 cut(s)	220, 599
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	3 cut(s)	51, 240, 300
SinI	GGWCC	2 cut(s)	227, 269
SpeI	ACTAGT	1 cut(s)	113
Sse9I	AATT	5 cut(s)	26, 365, 405, 450, 502
SspMI	CTAG	4 cut(s)	114, 443, 522, 630
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	3 cut(s)	211, 289, 469
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	553
TasI	AATT	5 cut(s)	26, 365, 405, 450, 502
TfiI	GAWTC	2 cut(s)	128, 249
Tru1I	TTAA	4 cut(s)	29, 72, 186, 654
Tru9I	TTAA	4 cut(s)	29, 72, 186, 654
TscAI	CASTG	2 cut(s)	334, 399
TseI	GCWGC	2 cut(s)	569, 572
TspDTI	ATGAA	3 cut(s)	39, 299, 462
TspRI	CASTG	2 cut(s)	334, 399
Van91I	CCANNNNNTGG	1 cut(s)	606
VpaK11BI	GGWCC	2 cut(s)	227, 269
XapI	RAATTY	3 cut(s)	365, 405, 502
XceI	RCATGY	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	4 cut(s)	114, 443, 522, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.