Rroxscaffold_1G00071190
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010763
Physical Location & Seq
Reverse (-)
92080264 .. 92084280
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071190.1

Sequence Viewer

Length: 1404 bp
ATGCAGCTGATTTCCTTCGCGCAAGATCATGAATTAAGTCCAGACATACTCAAAGCTGAAGTTGACTGGGAGAACATTAAACCTCCAGTGATCGAAAGTGTGGATGCTTTAATAGCTAAAACTAAGAGTTCTACAACAAATGGAGTTGCCCTGAATGGAAATGGAATCACTCCTAATCAACCATCAGCTGAACGGACTACTTCAAAATCAGTGAAGAAACTACCTCTCCACGCAGTTACATCTATAACTGATGGCTTGAAGAAATTGTACATTGAAAAACTAAAACCATTGGAAGCTGCATATCGTTTCAATGATTTTGGTAATCCATTACTGACTAACAGTGATTTTGATGCCAAGCCTATGGTCATGCTTTTGGGTCAGTATTCAACTGGAAAAACAACATTTATAAAGCATTTGTTAAGATGTAACTATCCAGGAGCTCATATTGGGCCAGAGCCTACAACCGATAGATTTGTTGTTGTGATGTCTGGACCTGATGAAAGGAGCATTCCTGGAAATACCATAGCTGTTCATGCAGACATGCCTTTTAGCGGTCTAACAAGTTTTGGAGGTTCATTTCTGTCAAAATTTGAGTGTTCCCAAATGCCTCATCCATTGCTAGATCAAATTACACTTGTAGACACTCCTGGGGTTCTATCTGGAGAAAAGCAACGAACGCAAAGGAGTTATGATTTCACTGGTGTCATATCGTGGTTTGCTGCAAAATGTGATCTCATCCTTCTTCTTTTCGACCCTCATAAGCTTGATATCAGTGATGAATTTAAGCGTGTAATTGCATCTCTACGTGGGCATGATGACAAGATTCGAGTGGTTCTAAACAAAGCAGATCAAGTTGATACTCAACAACTGATGAGAGTTTATGGGGCATTAATGTGGTCACTTGGAAAGGTTTTGAATACTCCAGAGGTTGTGCGTGTTTATATTGGCTCATTTAATGATAAACCTGTCAATGAAGAAGCTGTCGGCCCCATGGGTAGAGAGCTTTTTGAAATGGAACAAGGTGACCTCCTTGCTGACCTGGTTGATATACCAAAGAAAGCTTGTGATCGCCGGATCAATGAATTTGTGAAACGTGCTAGAGCTGCAAAGATTCATGCCTACATAATTAGCCATCTTAAGAAAGAGATGCCTGCAATGATGGGCAAATCTAAGACTCAGAAGCGACTCATGGAAAATCTTGAAGAAGAGTTCGCAAAGGTTCAGAAAGAGTTTCATTTACCAGCAGGCGATTTTCCAAATGGTGAACAATTTCGAGAGGTCTTGAGCAATTACAACATTGACAAATTTGAGAAAGTGAAGCCTAAGATGATTCAAGCTGTAGATGACATGCTTGGATATGAAATCCCGGAGCTCTTGAAGAATCTCAGAAACCCCTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

467

Amino Acids

52.44

Weight (kDa)

6.45

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EHD_N PF16880 85 - 117 5e-15 N-terminal EH-domain containing protein
Dynamin_N PF00350 122 - 282 1.4e-13 Dynamin family
MMR_HSR1 PF01926 122 - 281 2.8e-07 50S ribosome-binding GTPase
DUF5600 PF18150 357 - 458 3.8e-37 Domain of unknown function (DUF5600)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 407
AccI GTMKAC 1 cut(s) 639
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 552
AclWI GGATC 1 cut(s) 1082
AcsI RAATTY 4 cut(s) 587, 779, 1082, 1304
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 551
AflII CTTAAG 1 cut(s) 1136
AjnI CCWGG 4 cut(s) 433, 511, 646, 1038
Alw21I GWGCWC 2 cut(s) 442, 1374
AlwI GGATC 1 cut(s) 1082
AoxI GGCC 2 cut(s) 449, 985
ApeKI GCWGC 4 cut(s) 4, 296, 719, 1103
ApoI RAATTY 4 cut(s) 587, 779, 1082, 1304
AseI ATTAAT 1 cut(s) 890
Asp700I GAANNNNTTC 1 cut(s) 1269
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 3 cut(s) 449, 491, 986
AsuC2I CCSGG 1 cut(s) 1367
AsuHPI GGTGA 2 cut(s) 1034, 1274
AvaII GGWCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 442, 1374
BarI GAAGNNNNNNTAC 2 cut(s) 251, 283
Bbv12I GWGCWC 2 cut(s) 442, 1374
BbvI GCAGC 4 cut(s) 16, 283, 706, 1090
BccI CCATC 4 cut(s) 190, 245, 1140, 1153
BciT130I CCWGG 4 cut(s) 435, 513, 648, 1040
BcnI CCSGG 1 cut(s) 1367
BfaI CTAG 2 cut(s) 620, 1098
BfmI CTRYAG 1 cut(s) 1338
BfrI CTTAAG 1 cut(s) 1136
BisI GCNGC 4 cut(s) 5, 297, 720, 1104
BlsI GCNGC 4 cut(s) 6, 298, 721, 1105
Bme1390I CCNGG 5 cut(s) 435, 513, 648, 1040, 1367
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 3 cut(s) 449, 491, 986
BmiI GGNNCC 1 cut(s) 988
BmrFI CCNGG 5 cut(s) 435, 513, 648, 1040, 1367
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 4 cut(s) 94, 340, 806, 1137
BmuI ACTGGG 1 cut(s) 76
BpmI CTGGAG 3 cut(s) 69, 681, 906
BpuEI CTTGAG 1 cut(s) 1303
BpuMI CCSGG 1 cut(s) 1367
BsaAI YACGTR 1 cut(s) 806
BsaJI CCNNGG 2 cut(s) 647, 990
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 551
Bse1I ACTGG 4 cut(s) 71, 86, 394, 703
Bse3DI GCAATG 2 cut(s) 614, 1161
BseBI CCWGG 4 cut(s) 435, 513, 648, 1040
BseDI CCNNGG 2 cut(s) 647, 990
BseGI GGATG 3 cut(s) 109, 610, 735
BseLI CCNNNNNNNGG 1 cut(s) 551
BseMI GCAATG 2 cut(s) 614, 1161
BseMII CTCAG 2 cut(s) 1190, 1399
BseNI ACTGG 4 cut(s) 71, 86, 394, 703
BseXI GCAGC 4 cut(s) 16, 283, 706, 1090
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 2 cut(s) 451, 987
BsiHKAI GWGCWC 2 cut(s) 442, 1374
BsiSI CCGG 2 cut(s) 1072, 1367
BslI CCNNNNNNNGG 1 cut(s) 551
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 2 cut(s) 451, 987
Bsp1286I GDGCHC 2 cut(s) 442, 1374
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 1 cut(s) 552
BspANI GGCC 2 cut(s) 451, 987
BspCNI CTCAG 2 cut(s) 1189, 1398
BspFNI CGCG 1 cut(s) 20
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 988
BspPI GGATC 1 cut(s) 1082
BspTI CTTAAG 1 cut(s) 1136
BsrDI GCAATG 2 cut(s) 614, 1161
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 4 cut(s) 71, 86, 394, 703
BssECI CCNNGG 2 cut(s) 647, 990
BssMI GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
BssT1I CCWWGG 1 cut(s) 990
Bst2UI CCWGG 4 cut(s) 435, 513, 648, 1040
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 1200
BstAFI CTTAAG 1 cut(s) 1136
BstAUI TGTACA 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 1152, 1246
BstDEI CTNAG 5 cut(s) 123, 1170, 1176, 1323, 1385
BstDSI CCRYGG 1 cut(s) 990
BstEII GGTNACC 1 cut(s) 1022
BstF5I GGATG 3 cut(s) 109, 610, 735
BstFNI CGCG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 7 cut(s) 28, 93, 625, 733, 850, 1069, 1077
BstMBI GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
BstMWI GCNNNNNNNGC 4 cut(s) 113, 533, 676, 1103
BstNI CCWGG 4 cut(s) 435, 513, 648, 1040
BstNSI RCATGY 2 cut(s) 544, 1351
BstPI GGTNACC 1 cut(s) 1022
BstSCI CCNGG 5 cut(s) 433, 511, 646, 1038, 1365
BstSFI CTRYAG 1 cut(s) 1338
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 4 cut(s) 16, 283, 706, 1090
BstXI CCANNNNNNTGG 1 cut(s) 361
BsuRI GGCC 2 cut(s) 451, 987
BtgI CCRYGG 1 cut(s) 990
BtsCI GGATG 3 cut(s) 109, 610, 735
BtsIMutI CAGTG 5 cut(s) 93, 216, 346, 696, 778
Cac8I GCNNGC 2 cut(s) 1152, 1246
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 449, 491, 986
CsiI ACCWGGT 1 cut(s) 1038
Csp6I GTAC 1 cut(s) 268
CviAII CATG 9 cut(s) 29, 367, 533, 541, 812, 991, 1115, 1189, 1348
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 5 cut(s) 123, 1170, 1176, 1323, 1385
DpnI GATC 7 cut(s) 27, 92, 624, 732, 849, 1068, 1076
DpnII GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
Eam1104I CTCTTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 1200
Ecl136II GAGCTC 2 cut(s) 440, 1372
Eco130I CCWWGG 1 cut(s) 990
Eco24I GRGCYC 2 cut(s) 442, 1374
Eco32I GATATC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 491
Eco53kI GAGCTC 2 cut(s) 440, 1372
Eco57I CTGAAG 1 cut(s) 78
Eco91I GGTNACC 1 cut(s) 1022
EcoICRI GAGCTC 2 cut(s) 440, 1372
EcoO65I GGTNACC 1 cut(s) 1022
EcoRII CCWGG 4 cut(s) 433, 511, 646, 1038
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 990
EcoT38I GRGCYC 2 cut(s) 442, 1374
ErhI CCWWGG 1 cut(s) 990
FaeI CATG 9 cut(s) 32, 370, 536, 544, 815, 994, 1118, 1192, 1351
FatI CATG 9 cut(s) 28, 366, 532, 540, 811, 990, 1114, 1188, 1347
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 4 cut(s) 5, 297, 720, 1104
FokI GGATG 3 cut(s) 116, 597, 722
FriOI GRGCYC 2 cut(s) 442, 1374
Fsp4HI GCNGC 4 cut(s) 5, 297, 720, 1104
FspBI CTAG 2 cut(s) 620, 1098
GlaI GCGC 1 cut(s) 21
GluI GCNGC 4 cut(s) 5, 297, 720, 1104
GsuI CTGGAG 3 cut(s) 69, 681, 906
HaeIII GGCC 2 cut(s) 451, 987
HapII CCGG 2 cut(s) 1072, 1367
HhaI GCGC 1 cut(s) 22
Hin1II CATG 9 cut(s) 32, 370, 536, 544, 815, 994, 1118, 1192, 1351
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 2 cut(s) 761, 1059
HinfI GANTC 7 cut(s) 165, 823, 1111, 1174, 1185, 1330, 1381
HpaII CCGG 2 cut(s) 1072, 1367
HphI GGTGA 2 cut(s) 1034, 1274
Hpy166II GTNNAC 3 cut(s) 64, 640, 1265
Hpy188I TCNGA 3 cut(s) 1179, 1224, 1388
Hpy188III TCNNGA 9 cut(s) 29, 41, 489, 660, 923, 1199, 1274, 1282, 1375
Hpy8I GTNNAC 3 cut(s) 64, 640, 1265
HpyAV CCTTC 2 cut(s) 25, 749
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 2 cut(s) 805, 1093
HpyCH4V TGCA 7 cut(s) 4, 299, 536, 722, 797, 1106, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 533, 676, 1103
HpyF3I CTNAG 5 cut(s) 123, 1170, 1176, 1323, 1385
HpySE526I ACGT 2 cut(s) 805, 1093
Hsp92II CATG 9 cut(s) 32, 370, 536, 544, 815, 994, 1118, 1192, 1351
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
LmnI GCTCC 3 cut(s) 437, 504, 1369
Lsp1109I GCAGC 4 cut(s) 16, 283, 706, 1090
LweI GCATC 4 cut(s) 94, 340, 806, 1137
MabI ACCWGGT 1 cut(s) 1038
MaeI CTAG 2 cut(s) 620, 1098
MaeII ACGT 2 cut(s) 805, 1093
MaeIII GTNAC 4 cut(s) 235, 425, 897, 1022
MalI GATC 7 cut(s) 27, 92, 624, 732, 849, 1068, 1076
MboI GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
MboII GAAGA 7 cut(s) 226, 271, 734, 986, 1214, 1217, 1390
MhlI GDGCHC 2 cut(s) 442, 1374
MlyI GAGTC 2 cut(s) 1168, 1179
MnlI CCTC 8 cut(s) 93, 234, 563, 618, 765, 919, 1037, 1270
MroXI GAANNNNTTC 1 cut(s) 1269
MseI TTAA 9 cut(s) 35, 78, 110, 419, 783, 890, 954, 1137, 1402
MslI CAYNNNNRTG 1 cut(s) 892
MspA1I CMGCKG 2 cut(s) 7, 188
MspCI CTTAAG 1 cut(s) 1136
MspI CCGG 2 cut(s) 1072, 1367
MspR9I CCNGG 5 cut(s) 435, 513, 648, 1040, 1367
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 4 cut(s) 435, 513, 648, 1040
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 4 cut(s) 113, 533, 676, 1103
NciI CCSGG 1 cut(s) 1367
NcoI CCATGG 1 cut(s) 990
NdeII GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
NlaIII CATG 9 cut(s) 32, 370, 536, 544, 815, 994, 1118, 1192, 1351
NlaIV GGNNCC 1 cut(s) 988
NmuCI GTSAC 2 cut(s) 897, 1022
NspI RCATGY 2 cut(s) 544, 1351
PagI TCATGA 1 cut(s) 28
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 1269
PfeI GAWTC 5 cut(s) 165, 823, 1111, 1330, 1381
PfoI TCCNGGA 3 cut(s) 433, 511, 1365
PkrI GCNGC 4 cut(s) 6, 298, 721, 1105
PleI GAGTC 2 cut(s) 1168, 1179
PpsI GAGTC 2 cut(s) 1168, 1179
Ppu21I YACGTR 1 cut(s) 806
PshBI ATTAAT 1 cut(s) 890
PsiI TTATAA 1 cut(s) 407
Psp124BI GAGCTC 2 cut(s) 442, 1374
Psp6I CCWGG 4 cut(s) 433, 511, 646, 1038
PspEI GGTNACC 1 cut(s) 1022
PspGI CCWGG 4 cut(s) 433, 511, 646, 1038
PspN4I GGNNCC 1 cut(s) 988
PspPI GGNCC 3 cut(s) 449, 491, 986
PvuII CAGCTG 2 cut(s) 7, 188
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
RseI CAYNNNNRTG 1 cut(s) 892
SacI GAGCTC 2 cut(s) 442, 1374
SaqAI TTAA 9 cut(s) 35, 78, 110, 419, 783, 890, 954, 1137, 1402
SatI GCNGC 4 cut(s) 5, 297, 720, 1104
Sau3AI GATC 7 cut(s) 25, 90, 622, 730, 847, 1066, 1074
Sau96I GGNCC 3 cut(s) 449, 491, 986
SchI GAGTC 2 cut(s) 1168, 1179
ScrFI CCNGG 5 cut(s) 435, 513, 648, 1040, 1367
SduI GDGCHC 2 cut(s) 442, 1374
SexAI ACCWGGT 1 cut(s) 1038
SfaNI GCATC 4 cut(s) 94, 340, 806, 1137
SfcI CTRYAG 1 cut(s) 1338
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 892
SmlI CTYRAG 2 cut(s) 1136, 1282
SmoI CTYRAG 2 cut(s) 1136, 1282
SsiI CCGC 1 cut(s) 552
SspMI CTAG 2 cut(s) 620, 1098
SstI GAGCTC 2 cut(s) 442, 1374
StyD4I CCNGG 5 cut(s) 433, 511, 646, 1038, 1365
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 2 cut(s) 808, 1096
TaqI TCGA 4 cut(s) 93, 750, 826, 1273
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 5 cut(s) 165, 823, 1111, 1330, 1381
Tru1I TTAA 9 cut(s) 35, 78, 110, 419, 783, 890, 954, 1137, 1402
Tru9I TTAA 9 cut(s) 35, 78, 110, 419, 783, 890, 954, 1137, 1402
TscAI CASTG 5 cut(s) 93, 216, 346, 703, 778
TseFI GTSAC 2 cut(s) 897, 1022
TseI GCWGC 4 cut(s) 4, 296, 719, 1103
Tsp45I GTSAC 2 cut(s) 897, 1022
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 5 cut(s) 93, 216, 346, 703, 778
Vha464I CTTAAG 1 cut(s) 1136
VpaK11BI GGWCC 1 cut(s) 491
VspI ATTAAT 1 cut(s) 890
XapI RAATTY 4 cut(s) 587, 779, 1082, 1304
XceI RCATGY 2 cut(s) 544, 1351
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 1269
XspI CTAG 2 cut(s) 620, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.