Rorug04G0392200
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010763
Physical Location & Seq
Forward (+)
55929009 .. 55930779
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0392200.1

Sequence Viewer

Length: 537 bp
ATGGAGAAAGCTCTAACCAAAGTGAACAGCTTGAAAATTGGGAGTTCATGGATCTCAAAGAAAGCCAAGGAAGAGTTGTCTAACATCAGCGACGACATCACCACTTTCTCAAGTACCGTTGAGCAGAAGGCAAAATGGATTTTCGACAAGCTAAAAGGAAAGACACCAAAGAGCTTACCAGAACTCCTCCGAGAGTACAACTTGCCACCAGGGCTCTTTCCAGCAAACATAACCTGTTATGAGTTTACCGAGACAAATGCCAAGCTGATTGTGTATTTGCCGGCTCCATCTGAAGTTACCTTCAAGGATTCATCTGCTATAAGGTATGCAACCCGGGTGAAGGCAAATCTGTTGAGGGGAAAGCTCATAGGGATAGAGGGAATGAAGACGAAGGTTGTTGTATGGGTTAAGGTTACTTGTGTAGCAGTGGAAAGTTCCAAGTCTGACAAGGTCTGGTTTACTGCTGGTGTTAAGAAGTCAAGATCCAAGGATGTCTACATCACACCCCAAGATGCTATTAGGGTACAAGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

178

Amino Acids

19.97

Weight (kDa)

9.61

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 60 - 166 1.6e-26 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AclWI GGATC 2 cut(s) 59, 477
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 3 cut(s) 115, 197, 525
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 34, 304
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 6 cut(s) 11, 30, 151, 174, 265, 364
AluI AGCT 6 cut(s) 11, 30, 151, 174, 265, 364
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 59, 477
Ama87I CYCGRG 1 cut(s) 333
AsuC2I CCSGG 2 cut(s) 334, 335
AsuHPI GGTGA 2 cut(s) 91, 349
AvaI CYCGRG 1 cut(s) 333
BaeI ACNNNNGTAYC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 392
BccI CCATC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 2 cut(s) 334, 335
BcoDI GTCTC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 211
Bme1390I CCNGG 3 cut(s) 210, 334, 335
BmeT110I CYCGRG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 3 cut(s) 210, 334, 335
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 2 cut(s) 334, 335
BsaJI CCNNGG 4 cut(s) 66, 209, 333, 486
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 280
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 4 cut(s) 66, 209, 333, 486
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 2 cut(s) 281, 334
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 51, 482
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 59, 477
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 66, 209, 333, 486
BssMI GATC 2 cut(s) 51, 482
BssT1I CCWWGG 2 cut(s) 66, 486
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 282
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 2 cut(s) 54, 485
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 51, 482
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 3 cut(s) 208, 332, 333
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 2 cut(s) 51, 482
BstYI RGATCY 2 cut(s) 51, 482
BtsCI GGATG 1 cut(s) 496
BtsI GCAGTG 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 280
Cfr9I CCCGGG 1 cut(s) 333
Csp6I GTAC 3 cut(s) 114, 196, 524
CviAII CATG 1 cut(s) 48
CviJI RGCY 9 cut(s) 11, 30, 65, 151, 174, 214, 265, 284, 364
CviKI_1 RGCY 9 cut(s) 11, 30, 65, 151, 174, 214, 265, 284, 364
CviQI GTAC 3 cut(s) 114, 196, 524
DpnI GATC 2 cut(s) 53, 484
DpnII GATC 2 cut(s) 51, 482
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 66, 486
Eco24I GRGCYC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 66, 486
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 2 cut(s) 66, 486
FaeI CATG 1 cut(s) 51
FaiI YATR 7 cut(s) 49, 230, 240, 320, 327, 368, 403
FatI CATG 1 cut(s) 47
FblI GTMKAC 1 cut(s) 495
FokI GGATG 1 cut(s) 503
FriOI GRGCYC 1 cut(s) 216
HapII CCGG 2 cut(s) 281, 334
Hin1II CATG 1 cut(s) 51
HinfI GANTC 1 cut(s) 308
HpaII CCGG 2 cut(s) 281, 334
HphI GGTGA 2 cut(s) 91, 349
Hpy166II GTNNAC 4 cut(s) 25, 246, 459, 496
Hpy188I TCNGA 3 cut(s) 191, 292, 445
Hpy188III TCNNGA 1 cut(s) 480
Hpy8I GTNNAC 4 cut(s) 25, 246, 459, 496
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 121, 310, 334, 385
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
Hsp92II CATG 1 cut(s) 51
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 2 cut(s) 51, 482
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 9 cut(s) 192, 195, 222, 234, 247, 294, 347, 439, 450
LweI GCATC 1 cut(s) 502
MaeIII GTNAC 2 cut(s) 295, 412
MalI GATC 2 cut(s) 53, 484
MboI GATC 2 cut(s) 51, 482
MboII GAAGA 2 cut(s) 83, 397
MflI RGATCY 2 cut(s) 51, 482
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 36
MnlI CCTC 3 cut(s) 197, 348, 370
MroNI GCCGGC 1 cut(s) 280
MseI TTAA 2 cut(s) 408, 471
MspI CCGG 2 cut(s) 281, 334
MspR9I CCNGG 3 cut(s) 210, 334, 335
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 211
NaeI GCCGGC 1 cut(s) 282
NciI CCSGG 2 cut(s) 334, 335
NdeII GATC 2 cut(s) 51, 482
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 308
PflFI GACNNNGTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 285
PsuI RGATCY 2 cut(s) 51, 482
PsyI GACNNNGTC 1 cut(s) 449
RsaI GTAC 3 cut(s) 115, 197, 525
RsaNI GTAC 3 cut(s) 114, 196, 524
SaqAI TTAA 2 cut(s) 408, 471
Sau3AI GATC 2 cut(s) 51, 482
ScrFI CCNGG 3 cut(s) 210, 334, 335
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 502
SmaI CCCGGG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 208, 332, 333
StyI CCWWGG 2 cut(s) 66, 486
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 2 cut(s) 408, 471
Tru9I TTAA 2 cut(s) 408, 471
TscAI CASTG 1 cut(s) 432
TspDTI ATGAA 3 cut(s) 36, 300, 398
TspMI CCCGGG 1 cut(s) 333
TspRI CASTG 1 cut(s) 432
Tth111I GACNNNGTC 1 cut(s) 449
XmaI CCCGGG 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.