Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0017377

Physical Location & Seq

Genomic Coordinates Reverse (-)

18095095 .. 18095283

Gene Structure 189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1072700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTTTCAATCTGGAAAACCTAAGGTGCAAGGACTGCATTGGTGCGTTGAAGAGATTATGTTCTCTTTTACCTACCCTAGGCTTGACATGGAGGTTTCGAAACACATGAACCATTTGTTAAAGGCACCTTTCTGTGTACACCCAAAAATAGGTTGTGTTTGTGTCCTAATTGATCCAAATCATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0032993 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 map00230 map00240 map01100 map03030

Pfam Domains

Protein Families

DNA_primase_S

Protein Analysis

63

Amino Acids

7.17

Weight (kDa)

7.69

Isoelectric Point (pI)

19.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_primase_S	PF01896	16 - 58	2.9e-09	DNA primase small subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017377)

Species	Orthologous Gene IDs
malus_domestica	MD06G1072700.v1.1 MD14G1127600.v1.1
pyrus_communis	pycom16g19580
rosa_chinensis	RchiOBHm_Chr6g0245391
rosa_laevigata	RLG00000008502 RLG00000036015
rosa_multiflora	Rmu_sc0009380.1_g000010 Rmu_sc0030772.1_g000001
rosa_rugosa	Rorug05G0394000
rosa_samantha	Rh6BG026300 Rh6CG025000 Rh7DG148900
rosa_wichuraiana	Rw2G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	167
AfaI	GTAC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	78, 149
AgsI	TTSAA	2 cut(s)	8, 50
AlwI	GGATC	1 cut(s)	167
AspA2I	CCTAGG	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	98
AvrII	CCTAGG	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	124
BfaI	CTAG	1 cut(s)	78
BlnI	CCTAGG	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	126
Bpu14I	TTCGAA	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 149
Bse21I	CCTNAGG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	77
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	78, 149
BshNI	GGYRCC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	78, 149
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	2 cut(s)	88, 106
CviJI	RGCY	1 cut(s)	82
CviKI_1	RGCY	1 cut(s)	82
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	77
Eco81I	CCTNAGG	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	91, 109
FaiI	YATR	3 cut(s)	59, 89, 107
FatI	CATG	2 cut(s)	87, 105
FspBI	CTAG	1 cut(s)	78
Hin1II	CATG	2 cut(s)	91, 109
Hpy166II	GTNNAC	2 cut(s)	137, 139
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	2 cut(s)	137, 139
HpyCH4V	TGCA	2 cut(s)	28, 37
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	91, 109
Kzo9I	GATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	78
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	62
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	1 cut(s)	85
MseI	TTAA	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	91, 109
NlaIV	GGNNCC	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	172
SetI	ASST	6 cut(s)	22, 27, 74, 96, 130, 154
SfuI	TTCGAA	1 cut(s)	98
SgeI	CNNG	6 cut(s)	24, 41, 90, 95, 100, 118
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	77
TaqI	TCGA	1 cut(s)	98
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	76
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.